Wall clock time and date at job start Sun Mar 29 2020 21:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 115.55968 * 2 1 4 4 C 1.53001 * 117.49622 * 214.31357 * 2 1 3 5 5 C 1.52996 * 117.49686 * 145.68770 * 2 1 3 6 6 H 1.09004 * 117.51699 * 214.96744 * 5 2 1 7 7 C 1.52998 * 117.50069 * 0.02562 * 5 2 1 8 8 H 1.08990 * 115.56470 * 85.70204 * 7 5 2 9 9 C 1.53000 * 117.49463 * 231.39153 * 7 5 2 10 10 C 1.52997 * 60.00347 * 107.48750 * 9 7 5 11 11 H 1.08999 * 117.49685 * 252.51237 * 10 9 7 12 12 C 1.50697 * 117.49950 * 107.48460 * 10 9 7 13 13 O 1.21204 * 120.00454 * 291.37598 * 12 10 9 14 14 O 1.34318 * 119.99737 * 111.38442 * 12 10 9 15 15 C 1.34919 * 116.99781 * 179.97438 * 14 12 10 16 16 H 1.07992 * 120.00032 * 359.97438 * 15 14 12 17 17 C 1.38757 * 119.99521 * 180.02562 * 15 14 12 18 18 N 1.31442 * 119.99910 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00237 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46891 * 90.00561 * 19 17 15 21 21 H 1.48498 * 109.47415 * 210.00290 * 19 17 15 22 22 H 1.48497 * 109.47501 * 330.00711 * 19 17 15 23 23 H 1.09005 * 109.47348 * 274.31329 * 1 2 3 24 24 H 1.09006 * 109.47159 * 34.30755 * 1 2 3 25 25 H 1.08998 * 109.47353 * 154.31023 * 1 2 3 26 26 H 1.09001 * 117.49728 * 145.02452 * 4 2 1 27 27 H 1.09002 * 117.51968 * 359.97438 * 4 2 1 28 28 H 1.09002 * 117.49696 * 214.97963 * 9 7 5 29 29 H 1.09002 * 117.50343 * 359.97438 * 9 7 5 30 30 H 0.96997 * 120.00579 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2364 -1.1210 0.7650 6 1 3.1716 -0.8755 1.2683 7 6 1.3588 -2.1565 1.4710 8 1 1.0290 -2.9924 0.8542 9 6 1.6469 -2.4380 2.9470 10 6 0.3971 -1.6507 2.5482 11 1 0.3897 -0.5803 2.7539 12 6 -0.9336 -2.3466 2.6752 13 8 -1.2074 -3.2697 1.9391 14 8 -1.8162 -1.9436 3.6040 15 6 -2.9885 -2.6087 3.6642 16 1 -3.1822 -3.4243 2.9835 17 6 -3.9458 -2.2438 4.6001 18 7 -5.0881 -2.8914 4.6585 19 14 -3.6111 -0.8324 5.7771 20 1 -4.0786 0.4397 5.1701 21 1 -4.3356 -1.0683 7.0517 22 1 -2.1530 -0.7465 6.0451 23 1 -0.3634 0.0773 1.0248 24 1 -0.3634 0.8489 -0.5793 25 1 -0.3634 -0.9261 -0.4455 26 1 3.1715 -0.8752 -1.2683 27 1 1.6114 -1.8589 -1.2682 28 1 1.5067 -3.4593 3.3012 29 1 2.4619 -1.8859 3.4150 30 1 -5.7572 -2.6366 5.3129 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869886013.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:05 Heat of formation + Delta-G solvation = -36.858385 kcal Electronic energy + Delta-G solvation = -13736.906247 eV Core-core repulsion = 11306.180655 eV Total energy + Delta-G solvation = -2430.725592 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.65558 -38.29404 -35.78941 -34.48530 -32.26835 -28.55858 -26.22279 -23.86796 -23.05942 -21.31359 -19.68145 -18.87856 -17.91898 -16.83693 -15.76458 -15.19105 -14.73961 -14.16511 -14.08164 -13.23636 -12.75451 -12.58731 -12.37123 -12.15276 -11.61101 -11.43389 -11.29220 -11.16550 -10.66428 -10.54302 -10.42373 -10.30172 -9.70321 -9.61746 -9.39302 -9.10461 -8.65628 -6.34707 -4.10027 3.06560 3.24206 3.29381 3.40378 3.65994 4.11599 4.16909 4.27449 4.74879 4.84645 4.92208 5.13007 5.19697 5.34147 5.40415 5.45510 5.56217 5.80675 5.84062 5.93351 6.02220 6.12559 6.20556 6.24071 6.43680 6.51226 6.55465 7.77125 8.06405 8.65635 9.04129 9.73992 10.73912 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.045730 B = 0.007877 C = 0.007758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.138366 B = 3553.954822 C = 3608.087724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.147 4.147 3 H 0.101 0.899 4 C -0.173 4.173 5 C -0.123 4.123 6 H 0.106 0.894 7 C -0.093 4.093 8 H 0.118 0.882 9 C -0.150 4.150 10 C -0.141 4.141 11 H 0.124 0.876 12 C 0.438 3.562 13 O -0.540 6.540 14 O -0.249 6.249 15 C -0.381 4.381 16 H 0.109 0.891 17 C 0.065 3.935 18 N -0.876 5.876 19 Si 0.904 3.096 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.903 6.437 -5.108 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.165 4.165 3 H 0.119 0.881 4 C -0.210 4.210 5 C -0.141 4.141 6 H 0.124 0.876 7 C -0.111 4.111 8 H 0.136 0.864 9 C -0.187 4.187 10 C -0.160 4.160 11 H 0.142 0.858 12 C 0.284 3.716 13 O -0.435 6.435 14 O -0.157 6.157 15 C -0.457 4.457 16 H 0.126 0.874 17 C -0.138 4.138 18 N -0.515 5.515 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.602 6.178 -5.177 15.811 hybrid contribution -0.111 0.567 0.590 0.826 sum 13.492 6.745 -4.586 15.766 Atomic orbital electron populations 1.21430 0.92325 1.01963 1.02712 1.22371 0.95901 0.93887 1.04340 0.88097 1.23133 1.02327 1.01942 0.93606 1.21841 0.99729 0.99044 0.93481 0.87564 1.21779 0.98524 0.99753 0.91037 0.86406 1.23069 0.97106 1.01411 0.97150 1.21644 0.87896 1.00032 1.06456 0.85814 1.21941 0.85620 0.83554 0.80470 1.90581 1.78245 1.30277 1.44427 1.83508 1.26263 1.55914 1.50016 1.20657 0.88563 1.16070 1.20384 0.87379 1.24540 0.93994 0.98129 0.97134 1.69607 1.06000 1.40251 1.35672 0.86227 0.79571 0.81556 0.79690 1.19870 1.20762 1.18341 0.91492 0.92602 0.92118 0.89021 0.88569 0.88156 0.87988 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 8.97 37.16 0.33 -1.42 16 2 C -0.15 -1.73 6.39 -90.62 -0.58 -2.31 16 3 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 4 C -0.17 -1.91 9.90 -26.73 -0.26 -2.17 16 5 C -0.12 -1.47 5.87 -90.62 -0.53 -2.01 16 6 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 7 C -0.09 -1.39 4.77 -90.62 -0.43 -1.82 16 8 H 0.12 1.98 7.67 -51.93 -0.40 1.58 16 9 C -0.15 -2.19 9.95 -26.73 -0.27 -2.46 16 10 C -0.14 -2.50 4.31 -91.77 -0.40 -2.90 16 11 H 0.12 2.00 7.29 -51.93 -0.38 1.62 16 12 C 0.44 10.61 7.69 36.00 0.28 10.89 16 13 O -0.54 -14.61 15.49 -19.05 -0.30 -14.91 16 14 O -0.25 -6.77 8.58 -20.72 -0.18 -6.94 16 15 C -0.38 -11.59 10.10 30.92 0.31 -11.27 16 16 H 0.11 3.61 7.09 -52.49 -0.37 3.24 16 17 C 0.07 1.91 5.49 -17.53 -0.10 1.81 16 18 N -0.88 -26.33 13.96 55.48 0.77 -25.56 16 19 Si 0.90 21.78 28.62 -169.99 -4.86 16.91 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 22 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 23 H 0.07 1.02 5.95 -51.93 -0.31 0.72 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.93 7.90 -51.93 -0.41 0.51 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.10 1.13 8.05 -51.93 -0.42 0.71 16 28 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.28 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 262.52 15.07 3.96 3.96 Total: -1.00 -32.35 262.52 -6.21 -38.56 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -3.96 Total: 1.65 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -1.64 Total: -13.67 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.77 Total: -25.56 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.47 Total: -21.85 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.86 Total: 16.91 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.35 -6.21 -38.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869886013.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.701 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds