Wall clock time and date at job start Sun Mar 29 2020 21:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 115.54666 * 2 1 4 4 C 1.53073 * 117.53540 * 214.28626 * 2 1 3 5 5 C 1.52998 * 117.50084 * 145.66725 * 2 1 3 6 6 H 1.08998 * 117.49971 * 215.02332 * 5 2 1 7 7 C 1.53002 * 117.49863 * 0.02981 * 5 2 1 8 8 H 1.08998 * 115.56098 * 32.50326 * 7 5 2 9 9 C 1.52995 * 117.49731 * 246.81386 * 7 5 2 10 10 C 1.53000 * 117.49731 * 178.19114 * 7 5 2 11 11 H 1.08999 * 117.51863 * 214.96826 * 10 7 5 12 12 C 1.50697 * 117.49825 * 359.97438 * 10 7 5 13 13 O 1.21208 * 120.00135 * 311.33403 * 12 10 7 14 14 O 1.34314 * 119.99748 * 131.34025 * 12 10 7 15 15 C 1.34925 * 116.99784 * 179.97438 * 14 12 10 16 16 H 1.07994 * 119.99692 * 359.72119 * 15 14 12 17 17 C 1.38755 * 119.99437 * 179.97438 * 15 14 12 18 18 N 1.31435 * 120.00372 * 359.72122 * 17 15 14 19 19 Si 1.86803 * 119.99284 * 179.72416 * 17 15 14 20 20 H 1.48494 * 109.47417 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47062 * 120.00068 * 19 17 15 22 22 H 1.48502 * 109.46687 * 239.99955 * 19 17 15 23 23 H 1.08999 * 109.47407 * 274.32789 * 1 2 3 24 24 H 1.08996 * 109.47423 * 34.33010 * 1 2 3 25 25 H 1.09001 * 109.46788 * 154.33111 * 1 2 3 26 26 H 1.08996 * 117.49321 * 145.04267 * 4 2 1 27 27 H 1.09004 * 117.51062 * 0.02562 * 4 2 1 28 28 H 1.09003 * 117.50267 * 145.01856 * 9 7 5 29 29 H 1.09010 * 117.51707 * 359.97438 * 9 7 5 30 30 H 0.96996 * 120.00040 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2376 -1.1215 -0.7646 5 6 2.2365 -1.1207 0.7654 6 1 3.1712 -0.8745 1.2692 7 6 1.3589 -2.1560 1.4717 8 1 0.4101 -2.3795 0.9840 9 6 1.3908 -2.1837 3.0011 10 6 2.0649 -3.3005 2.2015 11 1 1.5807 -4.2770 2.1943 12 6 3.5713 -3.3220 2.1691 13 8 4.1570 -3.1837 1.1170 14 8 4.2650 -3.4946 3.3062 15 6 5.6106 -3.5045 3.2073 16 1 6.0821 -3.3816 2.2435 17 6 6.3884 -3.6779 4.3432 18 7 5.8145 -3.8270 5.5163 19 14 8.2512 -3.6993 4.2052 20 1 8.6446 -3.5128 2.7855 21 1 8.8210 -2.6004 5.0256 22 1 8.7688 -5.0022 4.6947 23 1 -0.3634 0.0775 1.0247 24 1 -0.3634 0.8486 -0.5795 25 1 -0.3633 -0.9263 -0.4452 26 1 3.1729 -0.8754 -1.2673 27 1 1.6131 -1.8594 -1.2683 28 1 0.4630 -2.4253 3.5196 29 1 2.0373 -1.4647 3.5044 30 1 6.3583 -3.9485 6.3102 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869886014.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:06 Heat of formation + Delta-G solvation = -38.036535 kcal Electronic energy + Delta-G solvation = -13713.807226 eV Core-core repulsion = 11283.030545 eV Total energy + Delta-G solvation = -2430.776681 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.42102 -37.91104 -35.48529 -34.58996 -32.06496 -28.36126 -25.90176 -23.85802 -22.98283 -21.21662 -19.90998 -18.54935 -17.62205 -16.25657 -15.92858 -15.00623 -14.35329 -14.28205 -13.72260 -13.30491 -13.00646 -12.49482 -12.29594 -11.82163 -11.45549 -11.26674 -11.20619 -10.90012 -10.74891 -10.45291 -10.31890 -10.22236 -9.72102 -9.45889 -9.08850 -8.80460 -8.52934 -6.36353 -4.03956 3.12629 3.21143 3.28702 3.58551 3.70933 4.01552 4.39552 4.62484 4.80467 5.00929 5.12573 5.19359 5.38546 5.50536 5.53993 5.60388 5.66230 5.91815 5.96079 6.06655 6.11273 6.14553 6.37222 6.46966 6.48004 6.66762 6.91081 7.44848 8.00959 8.79284 9.12879 9.95934 10.82066 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.050719 B = 0.007544 C = 0.007054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.925823 B = 3710.786806 C = 3968.314605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.163 4.163 3 H 0.099 0.901 4 C -0.160 4.160 5 C -0.105 4.105 6 H 0.105 0.895 7 C -0.097 4.097 8 H 0.109 0.891 9 C -0.154 4.154 10 C -0.137 4.137 11 H 0.126 0.874 12 C 0.427 3.573 13 O -0.545 6.545 14 O -0.213 6.213 15 C -0.381 4.381 16 H 0.095 0.905 17 C 0.041 3.959 18 N -0.866 5.866 19 Si 0.941 3.059 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.276 1.276 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.978 4.961 -6.237 12.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.181 4.181 3 H 0.117 0.883 4 C -0.197 4.197 5 C -0.123 4.123 6 H 0.123 0.877 7 C -0.115 4.115 8 H 0.127 0.873 9 C -0.191 4.191 10 C -0.156 4.156 11 H 0.144 0.856 12 C 0.273 3.727 13 O -0.442 6.442 14 O -0.120 6.120 15 C -0.458 4.458 16 H 0.112 0.888 17 C -0.162 4.162 18 N -0.503 5.503 19 Si 0.765 3.235 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.748 4.962 -6.270 11.851 hybrid contribution 0.978 -0.186 0.029 0.996 sum -7.770 4.776 -6.241 11.051 Atomic orbital electron populations 1.21310 0.93223 1.01291 1.01630 1.22409 0.95099 0.94440 1.06164 0.88284 1.22939 1.01903 1.00314 0.94529 1.21700 0.99463 0.97224 0.93909 0.87679 1.21754 0.98798 0.96898 0.94088 0.87299 1.23029 1.02190 1.00772 0.93121 1.21611 0.90744 0.96179 1.07070 0.85628 1.22149 0.88790 0.78436 0.83365 1.90555 1.71103 1.50139 1.32377 1.83903 1.21111 1.74627 1.32352 1.21267 0.77496 1.51060 0.95947 0.88775 1.25316 1.00439 0.96312 0.94180 1.70005 1.36028 1.45996 0.98302 0.85649 0.80849 0.78104 0.78857 1.19005 1.20215 1.20201 0.92178 0.92783 0.92736 0.89090 0.89156 0.88230 0.88001 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.02 37.16 0.34 -0.95 16 2 C -0.16 -2.19 6.41 -90.58 -0.58 -2.77 16 3 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 4 C -0.16 -2.42 9.90 -26.69 -0.26 -2.68 16 5 C -0.10 -1.77 4.40 -90.62 -0.40 -2.17 16 6 H 0.11 2.12 7.36 -51.93 -0.38 1.74 16 7 C -0.10 -1.55 5.21 -90.62 -0.47 -2.02 16 8 H 0.11 1.45 7.13 -51.93 -0.37 1.08 16 9 C -0.15 -2.52 9.96 -26.73 -0.27 -2.78 16 10 C -0.14 -2.63 6.24 -91.77 -0.57 -3.20 16 11 H 0.13 2.12 8.14 -51.93 -0.42 1.70 16 12 C 0.43 10.84 6.68 36.00 0.24 11.08 16 13 O -0.55 -14.86 14.91 -19.05 -0.28 -15.15 16 14 O -0.21 -6.25 9.75 -20.72 -0.20 -6.45 16 15 C -0.38 -11.51 9.65 30.92 0.30 -11.21 16 16 H 0.09 2.87 6.86 -52.49 -0.36 2.51 16 17 C 0.04 1.18 5.49 -17.53 -0.10 1.09 16 18 N -0.87 -25.84 13.67 55.48 0.76 -25.08 16 19 Si 0.94 21.67 29.55 -169.99 -5.02 16.65 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.57 7.39 -51.93 -0.38 0.19 16 26 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 27 H 0.09 1.27 8.05 -51.93 -0.42 0.86 16 28 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.10 1.83 8.14 -51.92 -0.42 1.40 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 264.25 15.07 3.98 3.98 Total: -1.00 -32.84 264.25 -6.55 -39.39 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -4.01 Total: 2.30 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -1.78 Total: -15.64 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.76 Total: -25.08 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.49 Total: -21.60 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.84 -6.55 -39.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869886014.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.353 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds