Wall clock time and date at job start Sun Mar 29 2020 21:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 115.54666 * 2 1 4 4 C 1.53073 * 117.53540 * 214.28626 * 2 1 3 5 5 C 1.52998 * 117.50084 * 145.66725 * 2 1 3 6 6 H 1.08998 * 117.49971 * 215.02332 * 5 2 1 7 7 C 1.53002 * 117.49863 * 0.02981 * 5 2 1 8 8 H 1.08998 * 115.56098 * 32.50326 * 7 5 2 9 9 C 1.52995 * 117.49731 * 246.81386 * 7 5 2 10 10 C 1.53000 * 117.49731 * 178.19114 * 7 5 2 11 11 H 1.08999 * 117.51863 * 214.96826 * 10 7 5 12 12 C 1.50697 * 117.49825 * 359.97438 * 10 7 5 13 13 O 1.21208 * 120.00135 * 311.33403 * 12 10 7 14 14 O 1.34314 * 119.99748 * 131.34025 * 12 10 7 15 15 C 1.34925 * 116.99784 * 179.97438 * 14 12 10 16 16 H 1.07994 * 119.99692 * 359.72119 * 15 14 12 17 17 C 1.38755 * 119.99437 * 179.97438 * 15 14 12 18 18 N 1.31435 * 120.00372 * 359.72122 * 17 15 14 19 19 Si 1.86803 * 119.99284 * 179.72416 * 17 15 14 20 20 H 1.48494 * 109.47417 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47062 * 120.00068 * 19 17 15 22 22 H 1.48502 * 109.46687 * 239.99955 * 19 17 15 23 23 H 1.08999 * 109.47407 * 274.32789 * 1 2 3 24 24 H 1.08996 * 109.47423 * 34.33010 * 1 2 3 25 25 H 1.09001 * 109.46788 * 154.33111 * 1 2 3 26 26 H 1.08996 * 117.49321 * 145.04267 * 4 2 1 27 27 H 1.09004 * 117.51062 * 0.02562 * 4 2 1 28 28 H 1.09003 * 117.50267 * 145.01856 * 9 7 5 29 29 H 1.09010 * 117.51707 * 359.97438 * 9 7 5 30 30 H 0.96996 * 120.00040 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2376 -1.1215 -0.7646 5 6 2.2365 -1.1207 0.7654 6 1 3.1712 -0.8745 1.2692 7 6 1.3589 -2.1560 1.4717 8 1 0.4101 -2.3795 0.9840 9 6 1.3908 -2.1837 3.0011 10 6 2.0649 -3.3005 2.2015 11 1 1.5807 -4.2770 2.1943 12 6 3.5713 -3.3220 2.1691 13 8 4.1570 -3.1837 1.1170 14 8 4.2650 -3.4946 3.3062 15 6 5.6106 -3.5045 3.2073 16 1 6.0821 -3.3816 2.2435 17 6 6.3884 -3.6779 4.3432 18 7 5.8145 -3.8270 5.5163 19 14 8.2512 -3.6993 4.2052 20 1 8.6446 -3.5128 2.7855 21 1 8.8210 -2.6004 5.0256 22 1 8.7688 -5.0022 4.6947 23 1 -0.3634 0.0775 1.0247 24 1 -0.3634 0.8486 -0.5795 25 1 -0.3633 -0.9263 -0.4452 26 1 3.1729 -0.8754 -1.2673 27 1 1.6131 -1.8594 -1.2683 28 1 0.4630 -2.4253 3.5196 29 1 2.0373 -1.4647 3.5044 30 1 6.3583 -3.9485 6.3102 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869886014.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:06 Heat of formation + Delta-G solvation = -57.664621 kcal Electronic energy + Delta-G solvation = -13714.658364 eV Core-core repulsion = 11283.030545 eV Total energy + Delta-G solvation = -2431.627818 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.25336 -39.44631 -37.24225 -36.31587 -34.28958 -29.30772 -28.00500 -25.59681 -24.37489 -22.50433 -21.47177 -20.05188 -19.84511 -18.10657 -17.40142 -16.73561 -16.25920 -16.07760 -15.40850 -14.74663 -14.22345 -13.87643 -13.65934 -13.29660 -13.26420 -13.05911 -12.44124 -12.35810 -12.28833 -12.08463 -11.98329 -11.93634 -11.52949 -10.95480 -10.71309 -10.63526 -10.28008 -8.55545 -6.35522 1.28338 1.31181 1.49860 1.64535 2.08135 2.43406 2.83338 2.94791 3.16774 3.51401 3.82100 3.87001 4.15696 4.25792 4.31587 4.35971 4.48409 4.73358 4.90898 4.93063 4.95969 5.02099 5.05755 5.18442 5.19915 5.25005 5.34780 5.50058 5.82546 6.68027 6.89733 7.80900 8.65866 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.050719 B = 0.007544 C = 0.007054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.925823 B = 3710.786806 C = 3968.314605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.131 4.131 3 H 0.103 0.897 4 C -0.166 4.166 5 C -0.143 4.143 6 H 0.056 0.944 7 C -0.070 4.070 8 H 0.151 0.849 9 C -0.142 4.142 10 C -0.169 4.169 11 H 0.153 0.847 12 C 0.424 3.576 13 O -0.572 6.572 14 O -0.245 6.245 15 C -0.422 4.422 16 H 0.077 0.923 17 C -0.005 4.005 18 N -0.903 5.903 19 Si 1.017 2.983 20 H -0.267 1.267 21 H -0.259 1.259 22 H -0.258 1.258 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.142 0.858 29 H 0.075 0.925 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.409 5.340 -6.648 13.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.149 4.149 3 H 0.121 0.879 4 C -0.203 4.203 5 C -0.161 4.161 6 H 0.074 0.926 7 C -0.087 4.087 8 H 0.169 0.831 9 C -0.179 4.179 10 C -0.188 4.188 11 H 0.171 0.829 12 C 0.272 3.728 13 O -0.469 6.469 14 O -0.154 6.154 15 C -0.498 4.498 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.541 5.541 19 Si 0.836 3.164 20 H -0.191 1.191 21 H -0.183 1.183 22 H -0.182 1.182 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.124 0.876 28 H 0.160 0.840 29 H 0.094 0.906 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.204 5.346 -6.684 13.318 hybrid contribution 1.379 -0.256 0.101 1.406 sum -8.825 5.090 -6.583 12.129 Atomic orbital electron populations 1.21376 0.90413 1.02852 1.02694 1.22532 0.97001 0.93386 1.02001 0.87899 1.23022 1.02212 1.01929 0.93096 1.21640 0.99002 1.00528 0.94933 0.92558 1.21946 0.98987 0.93921 0.93869 0.83141 1.23146 1.02631 0.98144 0.93934 1.21811 0.86361 0.99020 1.11597 0.82915 1.23446 0.91360 0.75959 0.82067 1.90508 1.72562 1.50760 1.33068 1.83927 1.21042 1.75957 1.34425 1.21431 0.78474 1.53765 0.96109 0.90480 1.26536 1.06013 0.94696 0.93225 1.70083 1.38575 1.46200 0.99235 0.84588 0.73460 0.79390 0.79004 1.19082 1.18292 1.18195 0.91376 0.90784 0.91638 0.90380 0.87557 0.84038 0.90616 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 9.02 71.98 0.65 -1.41 16 2 C -0.13 -3.27 6.41 -10.77 -0.07 -3.34 16 3 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 4 C -0.17 -4.88 9.90 30.62 0.30 -4.58 16 5 C -0.14 -4.81 4.40 -10.79 -0.05 -4.86 16 6 H 0.06 2.43 7.36 -2.39 -0.02 2.41 16 7 C -0.07 -2.08 5.21 -10.79 -0.06 -2.14 16 8 H 0.15 3.30 7.13 -2.39 -0.02 3.28 16 9 C -0.14 -4.43 9.96 30.59 0.30 -4.13 16 10 C -0.17 -6.42 6.24 -11.54 -0.07 -6.49 16 11 H 0.15 4.91 8.14 -2.39 -0.02 4.89 16 12 C 0.42 22.47 6.68 71.24 0.48 22.95 16 13 O -0.57 -32.76 14.91 20.78 0.31 -32.45 16 14 O -0.24 -15.13 9.75 14.79 0.14 -14.99 16 15 C -0.42 -26.70 9.65 67.94 0.66 -26.04 16 16 H 0.08 4.98 6.86 -2.91 -0.02 4.96 16 17 C 0.00 -0.28 5.49 84.88 0.47 0.19 16 18 N -0.90 -54.89 13.67 21.62 0.30 -54.60 16 19 Si 1.02 44.83 29.55 68.60 2.03 46.86 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 23 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.05 7.39 -2.39 -0.02 1.03 16 26 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.11 2.77 8.05 -2.39 -0.02 2.75 16 28 H 0.14 3.23 8.14 -2.39 -0.02 3.21 16 29 H 0.08 2.77 8.14 -2.38 -0.02 2.75 16 30 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -75.40 264.25 6.51 -68.89 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.12 Total: 16.15 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 2.61 Total: -29.85 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.30 Total: -54.60 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: 0.45 Total: -47.44 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -75.40 6.51 -68.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869886014.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.222 kcal (2) G-P(sol) polarization free energy of solvation -75.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds