Wall clock time and date at job start Sun Mar 29 2020 21:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86801 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46965 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47189 * 299.99590 * 3 2 1 6 6 H 1.48500 * 109.47516 * 60.00034 * 3 2 1 7 7 C 1.38753 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99879 * 180.02562 * 7 2 1 9 9 O 1.34919 * 119.99878 * 359.97438 * 7 2 1 10 10 C 1.34308 * 117.00042 * 180.02562 * 9 7 2 11 11 O 1.21212 * 120.00142 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99980 * 180.02562 * 10 9 7 13 13 C 1.51872 * 108.55980 * 55.94413 * 12 10 9 14 14 C 1.53029 * 110.76080 * 187.50883 * 13 12 10 15 15 C 1.51376 * 108.61350 * 274.28983 * 14 13 12 16 16 C 1.29521 * 120.35897 * 71.92013 * 15 14 13 17 17 C 1.51368 * 120.36592 * 359.97438 * 16 15 14 18 18 C 1.51846 * 108.65038 * 179.97438 * 12 10 9 19 19 H 0.97002 * 119.99593 * 0.02562 * 1 2 3 20 20 H 1.09003 * 108.60262 * 298.01483 * 12 10 9 21 21 H 1.09002 * 109.19818 * 67.18506 * 13 12 10 22 22 H 1.09003 * 109.23746 * 307.85372 * 13 12 10 23 23 H 1.08996 * 109.61401 * 154.54781 * 14 13 12 24 24 H 1.09007 * 109.61034 * 34.02360 * 14 13 12 25 25 H 1.07998 * 119.81373 * 251.89593 * 15 14 13 26 26 H 1.08006 * 119.81476 * 179.97438 * 16 15 14 27 27 H 1.09005 * 109.61186 * 47.83692 * 17 16 15 28 28 H 1.09003 * 109.61765 * 168.18474 * 17 16 15 29 29 H 1.09007 * 109.22116 * 52.20325 * 18 12 10 30 30 H 1.08998 * 109.21839 * 292.86242 * 18 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8897 2.3964 -1.2125 6 1 1.8897 2.3965 1.2125 7 6 2.0083 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0001 9 8 1.3337 -2.3701 -0.0005 10 6 2.0652 -3.4965 -0.0005 11 8 3.2756 -3.4331 -0.0010 12 6 1.3810 -4.8392 -0.0011 13 6 0.4436 -4.9036 -1.1943 14 6 -0.4147 -6.1695 -1.1421 15 6 0.3588 -7.3043 -1.7789 16 6 1.3770 -7.8248 -1.1706 17 6 1.8068 -7.3047 0.1844 18 6 2.4424 -5.9251 -0.0016 19 1 -0.4849 0.8401 -0.0004 20 1 0.7904 -4.9290 0.9107 21 1 1.0314 -4.9061 -2.1122 22 1 -0.2066 -4.0287 -1.1879 23 1 -1.3421 -6.0056 -1.6909 24 1 -0.6393 -6.4167 -0.1045 25 1 0.0597 -7.6821 -2.7454 26 1 1.9223 -8.6344 -1.6328 27 1 0.9377 -7.2223 0.8372 28 1 2.5322 -7.9883 0.6255 29 1 3.1444 -5.7411 0.8118 30 1 2.9792 -5.9017 -0.9500 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873430885.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:26 Heat of formation + Delta-G solvation = -83.535643 kcal Electronic energy + Delta-G solvation = -13910.650475 eV Core-core repulsion = 11477.900805 eV Total energy + Delta-G solvation = -2432.749670 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.48348 -37.74608 -35.11073 -32.43369 -31.99659 -31.52146 -26.25966 -24.82033 -23.62903 -21.34224 -19.30768 -17.85515 -17.64309 -16.63946 -15.99253 -14.88906 -14.37119 -14.31037 -14.07532 -13.18411 -12.76290 -12.68751 -12.66983 -11.79081 -11.47547 -11.40967 -11.17303 -11.00687 -10.46784 -10.41800 -10.34216 -10.22603 -10.05523 -9.69921 -9.02438 -8.72160 -8.53461 -6.36976 -4.04308 2.44198 3.12718 3.21382 3.28978 3.59556 3.98597 4.58744 4.85182 5.08095 5.15907 5.30817 5.37246 5.39868 5.65022 5.69373 5.78984 5.95127 5.98163 6.04844 6.19820 6.45266 6.48530 6.58077 6.71947 6.83558 6.96141 7.06422 7.44835 8.00817 8.78174 9.12520 9.92900 10.81310 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.060276 B = 0.007621 C = 0.007019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.418965 B = 3673.355042 C = 3988.060340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.381 4.381 8 H 0.094 0.906 9 O -0.215 6.215 10 C 0.398 3.602 11 O -0.558 6.558 12 C -0.066 4.066 13 C -0.106 4.106 14 C -0.090 4.090 15 C -0.157 4.157 16 C -0.160 4.160 17 C -0.091 4.091 18 C -0.095 4.095 19 H 0.268 0.732 20 H 0.089 0.911 21 H 0.064 0.936 22 H 0.085 0.915 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.966 -11.440 -1.350 11.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.458 4.458 8 H 0.112 0.888 9 O -0.122 6.122 10 C 0.245 3.755 11 O -0.455 6.455 12 C -0.085 4.085 13 C -0.143 4.143 14 C -0.127 4.127 15 C -0.175 4.175 16 C -0.178 4.178 17 C -0.128 4.128 18 C -0.133 4.133 19 H 0.078 0.922 20 H 0.107 0.893 21 H 0.082 0.918 22 H 0.103 0.897 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.835 -11.235 -1.348 11.346 hybrid contribution 0.445 0.797 -0.090 0.917 sum -0.390 -10.438 -1.438 10.544 Atomic orbital electron populations 1.70002 1.05945 1.27425 1.47030 1.25310 0.95793 0.98783 0.96347 0.85647 0.79485 0.80249 0.78078 1.19013 1.20214 1.20207 1.21266 0.92366 0.80063 1.52102 0.88805 1.83875 1.39350 1.13335 1.75608 1.23350 0.86668 0.87374 0.78135 1.90536 1.15903 1.88137 1.50962 1.20472 0.96986 0.90326 1.00752 1.21271 0.97694 0.98070 0.97300 1.20840 0.97793 0.93283 1.00783 1.22590 0.97635 0.97719 0.99534 1.22538 0.97835 0.99992 0.97482 1.20836 1.00596 0.96342 0.94998 1.21108 0.96965 0.91662 1.03524 0.92235 0.89269 0.91750 0.89677 0.91322 0.90961 0.87816 0.87862 0.91028 0.91515 0.90897 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.65 13.67 55.48 0.76 -24.89 16 2 C 0.04 1.18 5.49 -17.53 -0.10 1.08 16 3 Si 0.94 21.65 29.55 -169.99 -5.02 16.62 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.38 -11.52 9.65 30.92 0.30 -11.22 16 8 H 0.09 2.87 6.86 -52.49 -0.36 2.51 16 9 O -0.21 -6.23 9.27 -20.69 -0.19 -6.42 16 10 C 0.40 10.06 7.18 36.01 0.26 10.32 16 11 O -0.56 -15.39 15.00 -19.05 -0.29 -15.68 16 12 C -0.07 -1.24 2.14 -92.93 -0.20 -1.44 16 13 C -0.11 -1.81 4.88 -27.29 -0.13 -1.94 16 14 C -0.09 -1.20 5.62 -27.54 -0.15 -1.36 16 15 C -0.16 -1.94 9.34 -35.28 -0.33 -2.27 16 16 C -0.16 -1.96 9.34 -35.29 -0.33 -2.29 16 17 C -0.09 -1.15 5.62 -27.54 -0.15 -1.31 16 18 C -0.10 -1.56 4.30 -27.30 -0.12 -1.68 16 19 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 20 H 0.09 1.56 7.89 -51.93 -0.41 1.15 16 21 H 0.06 1.13 7.86 -51.93 -0.41 0.72 16 22 H 0.08 1.63 7.73 -51.93 -0.40 1.23 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.07 0.92 6.68 -51.93 -0.35 0.57 16 25 H 0.10 1.13 8.06 -52.49 -0.42 0.71 16 26 H 0.10 1.10 8.06 -52.48 -0.42 0.68 16 27 H 0.07 0.87 6.68 -51.93 -0.35 0.53 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.26 7.78 -51.92 -0.40 0.85 16 30 H 0.07 1.18 7.86 -51.93 -0.41 0.78 16 LS Contribution 252.40 15.07 3.80 3.80 Total: -1.00 -32.65 252.40 -5.81 -38.46 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -3.91 Total: 0.22 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -0.96 Total: -12.11 kcal Atomic # 7 Polarization: -25.65 SS G_CDS: 0.76 Total: -24.89 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.48 Total: -22.10 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.65 -5.81 -38.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873430885.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.078 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds