Wall clock time and date at job start Sun Mar 29 2020 21:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86801 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46965 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47189 * 299.99590 * 3 2 1 6 6 H 1.48500 * 109.47516 * 60.00034 * 3 2 1 7 7 C 1.38753 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99879 * 180.02562 * 7 2 1 9 9 O 1.34919 * 119.99878 * 359.97438 * 7 2 1 10 10 C 1.34308 * 117.00042 * 180.02562 * 9 7 2 11 11 O 1.21212 * 120.00142 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99980 * 180.02562 * 10 9 7 13 13 C 1.51872 * 108.55980 * 55.94413 * 12 10 9 14 14 C 1.53029 * 110.76080 * 187.50883 * 13 12 10 15 15 C 1.51376 * 108.61350 * 274.28983 * 14 13 12 16 16 C 1.29521 * 120.35897 * 71.92013 * 15 14 13 17 17 C 1.51368 * 120.36592 * 359.97438 * 16 15 14 18 18 C 1.51846 * 108.65038 * 179.97438 * 12 10 9 19 19 H 0.97002 * 119.99593 * 0.02562 * 1 2 3 20 20 H 1.09003 * 108.60262 * 298.01483 * 12 10 9 21 21 H 1.09002 * 109.19818 * 67.18506 * 13 12 10 22 22 H 1.09003 * 109.23746 * 307.85372 * 13 12 10 23 23 H 1.08996 * 109.61401 * 154.54781 * 14 13 12 24 24 H 1.09007 * 109.61034 * 34.02360 * 14 13 12 25 25 H 1.07998 * 119.81373 * 251.89593 * 15 14 13 26 26 H 1.08006 * 119.81476 * 179.97438 * 16 15 14 27 27 H 1.09005 * 109.61186 * 47.83692 * 17 16 15 28 28 H 1.09003 * 109.61765 * 168.18474 * 17 16 15 29 29 H 1.09007 * 109.22116 * 52.20325 * 18 12 10 30 30 H 1.08998 * 109.21839 * 292.86242 * 18 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8897 2.3964 -1.2125 6 1 1.8897 2.3965 1.2125 7 6 2.0083 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0001 9 8 1.3337 -2.3701 -0.0005 10 6 2.0652 -3.4965 -0.0005 11 8 3.2756 -3.4331 -0.0010 12 6 1.3810 -4.8392 -0.0011 13 6 0.4436 -4.9036 -1.1943 14 6 -0.4147 -6.1695 -1.1421 15 6 0.3588 -7.3043 -1.7789 16 6 1.3770 -7.8248 -1.1706 17 6 1.8068 -7.3047 0.1844 18 6 2.4424 -5.9251 -0.0016 19 1 -0.4849 0.8401 -0.0004 20 1 0.7904 -4.9290 0.9107 21 1 1.0314 -4.9061 -2.1122 22 1 -0.2066 -4.0287 -1.1879 23 1 -1.3421 -6.0056 -1.6909 24 1 -0.6393 -6.4167 -0.1045 25 1 0.0597 -7.6821 -2.7454 26 1 1.9223 -8.6344 -1.6328 27 1 0.9377 -7.2223 0.8372 28 1 2.5322 -7.9883 0.6255 29 1 3.1444 -5.7411 0.8118 30 1 2.9792 -5.9017 -0.9500 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873430885.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:26 Heat of formation + Delta-G solvation = -103.197316 kcal Electronic energy + Delta-G solvation = -13911.503070 eV Core-core repulsion = 11477.900805 eV Total energy + Delta-G solvation = -2433.602264 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.36120 -39.22526 -37.20490 -34.36170 -33.62093 -32.72577 -28.04717 -26.53174 -24.86521 -22.99880 -20.98533 -19.88714 -18.87387 -18.50027 -17.32228 -16.85031 -16.29087 -16.13876 -15.38446 -14.68050 -14.43727 -14.08516 -13.87080 -13.67793 -13.11507 -13.00405 -12.66243 -12.39284 -12.20267 -12.12442 -12.01593 -11.76348 -11.49314 -11.21416 -10.91866 -10.70858 -9.88235 -8.55576 -6.35554 1.27843 1.32503 1.47630 1.51020 1.63332 2.10877 2.74590 2.95099 3.64807 3.83752 4.09705 4.12611 4.24745 4.42909 4.50332 4.56623 4.60838 4.81053 4.89718 4.94892 5.10814 5.15177 5.21447 5.28967 5.31459 5.41429 5.82245 5.84988 6.11091 6.65505 6.89662 7.76476 8.65247 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.060276 B = 0.007621 C = 0.007019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.418965 B = 3673.355042 C = 3988.060340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.003 4.003 3 Si 1.017 2.983 4 H -0.267 1.267 5 H -0.259 1.259 6 H -0.258 1.258 7 C -0.425 4.425 8 H 0.078 0.922 9 O -0.241 6.241 10 C 0.392 3.608 11 O -0.586 6.586 12 C -0.058 4.058 13 C -0.100 4.100 14 C -0.083 4.083 15 C -0.163 4.163 16 C -0.161 4.161 17 C -0.084 4.084 18 C -0.089 4.089 19 H 0.279 0.721 20 H 0.105 0.895 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.270 -12.254 -1.447 12.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.203 4.203 3 Si 0.835 3.165 4 H -0.191 1.191 5 H -0.183 1.183 6 H -0.182 1.182 7 C -0.501 4.501 8 H 0.095 0.905 9 O -0.149 6.149 10 C 0.240 3.760 11 O -0.485 6.485 12 C -0.077 4.077 13 C -0.138 4.138 14 C -0.120 4.120 15 C -0.180 4.180 16 C -0.179 4.179 17 C -0.121 4.121 18 C -0.127 4.127 19 H 0.088 0.912 20 H 0.123 0.877 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.102 0.898 24 H 0.101 0.899 25 H 0.140 0.860 26 H 0.142 0.858 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.156 -12.077 -1.446 12.218 hybrid contribution 0.550 1.002 -0.055 1.145 sum -0.606 -11.075 -1.501 11.192 Atomic orbital electron populations 1.70079 1.07564 1.29299 1.46886 1.26521 0.96905 1.02258 0.94645 0.84590 0.77688 0.74810 0.79378 1.19095 1.18293 1.18224 1.21450 0.92072 0.81495 1.55052 0.90460 1.83904 1.40240 1.14131 1.76636 1.24770 0.86726 0.88616 0.75877 1.90496 1.17410 1.88724 1.51848 1.20716 0.97703 0.86949 1.02319 1.21202 0.97232 0.99404 0.95928 1.20787 0.97674 0.91518 1.02041 1.22704 0.97725 0.97271 1.00348 1.22721 0.97741 1.00419 0.97023 1.20811 1.01343 0.93956 0.96039 1.21085 0.96078 0.93172 1.02334 0.91164 0.87660 0.92674 0.92395 0.89839 0.89907 0.85983 0.85817 0.90025 0.89289 0.92145 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.91 13.67 21.62 0.30 -53.61 16 2 C 0.00 -0.18 5.49 84.87 0.47 0.29 16 3 Si 1.02 44.31 29.55 68.60 2.03 46.34 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.42 -26.61 9.65 67.94 0.66 -25.96 16 8 H 0.08 4.95 6.86 -2.91 -0.02 4.93 16 9 O -0.24 -14.61 9.27 14.90 0.14 -14.47 16 10 C 0.39 20.55 7.18 71.24 0.51 21.06 16 11 O -0.59 -33.64 15.00 20.77 0.31 -33.33 16 12 C -0.06 -2.18 2.14 -12.29 -0.03 -2.21 16 13 C -0.10 -3.42 4.88 30.23 0.15 -3.27 16 14 C -0.08 -2.05 5.62 30.07 0.17 -1.88 16 15 C -0.16 -3.55 9.34 27.37 0.26 -3.29 16 16 C -0.16 -3.42 9.34 27.37 0.26 -3.16 16 17 C -0.08 -1.92 5.62 30.07 0.17 -1.75 16 18 C -0.09 -2.86 4.30 30.23 0.13 -2.73 16 19 H 0.28 15.04 8.31 -92.71 -0.77 14.27 16 20 H 0.11 3.64 7.89 -2.39 -0.02 3.62 16 21 H 0.05 1.95 7.86 -2.39 -0.02 1.93 16 22 H 0.06 2.28 7.73 -2.39 -0.02 2.27 16 23 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.08 1.88 6.68 -2.38 -0.02 1.87 16 25 H 0.12 2.24 8.06 -2.91 -0.02 2.21 16 26 H 0.12 2.15 8.06 -2.91 -0.02 2.13 16 27 H 0.08 1.72 6.68 -2.38 -0.02 1.71 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 2.08 7.78 -2.38 -0.02 2.06 16 30 H 0.05 1.89 7.86 -2.39 -0.02 1.87 16 Total: -1.00 -72.61 252.40 6.63 -65.98 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 1.12 Total: 12.00 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 2.73 Total: -22.91 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.30 Total: -53.61 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: 0.45 Total: -47.80 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -72.61 6.63 -65.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873430885.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.214 kcal (2) G-P(sol) polarization free energy of solvation -72.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds