Wall clock time and date at job start Sun Mar 29 2020 21:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35446 * 128.00505 * 2 1 4 4 O 1.34044 * 106.44743 * 180.02562 * 3 2 1 5 5 N 1.20918 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60837 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.80448 * 179.73357 * 6 5 4 8 8 N 1.46903 * 109.47012 * 90.03063 * 7 6 5 9 9 C 1.46906 * 110.99664 * 293.95487 * 8 7 6 10 10 C 1.46894 * 111.00451 * 170.00007 * 8 7 6 11 11 C 1.50698 * 109.47443 * 189.99937 * 10 8 7 12 12 H 1.07996 * 119.99806 * 359.97438 * 11 10 8 13 13 C 1.37876 * 120.00130 * 180.02562 * 11 10 8 14 14 N 1.31513 * 119.99838 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00155 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47240 * 59.99676 * 15 13 11 17 17 H 1.48501 * 109.47370 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46918 * 299.99733 * 15 13 11 19 19 H 1.09000 * 109.46935 * 269.97368 * 1 2 3 20 20 H 1.08996 * 109.47443 * 29.97282 * 1 2 3 21 21 H 1.09001 * 109.47282 * 149.97957 * 1 2 3 22 22 H 1.08004 * 126.77907 * 0.02562 * 3 2 1 23 23 H 1.08999 * 109.47361 * 210.02423 * 7 6 5 24 24 H 1.08995 * 109.47063 * 330.03017 * 7 6 5 25 25 H 1.08999 * 109.47129 * 60.00048 * 9 8 7 26 26 H 1.09003 * 109.46651 * 179.97438 * 9 8 7 27 27 H 1.09000 * 109.47108 * 299.99770 * 9 8 7 28 28 H 1.09002 * 109.47195 * 310.00137 * 10 8 7 29 29 H 1.09004 * 109.47146 * 69.99333 * 10 8 7 30 30 H 0.97004 * 120.00034 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5877 0.5747 -0.0006 5 7 3.5878 -0.6344 -0.0004 6 6 2.3776 -1.1140 0.0008 7 6 1.9827 -2.5683 -0.0042 8 7 1.8574 -3.0465 1.3792 9 6 3.1601 -3.0403 2.0583 10 6 1.2481 -4.3824 1.4214 11 6 0.9109 -4.7360 2.8469 12 1 1.1279 -4.0382 3.6421 13 6 0.3262 -5.9507 3.1361 14 7 0.0633 -6.8010 2.1679 15 14 -0.0912 -6.3893 4.9032 16 1 -1.0472 -5.3922 5.4481 17 1 -0.7061 -7.7403 4.9460 18 1 1.1487 -6.3843 5.7205 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3634 0.8902 -0.5134 21 1 -0.3634 -0.8898 -0.5141 22 1 2.0576 2.1094 0.0004 23 1 1.0275 -2.6837 -0.5163 24 1 2.7453 -3.1500 -0.5220 25 1 3.5569 -2.0252 2.0739 26 1 3.0385 -3.3983 3.0806 27 1 3.8513 -3.6924 1.5244 28 1 0.3382 -4.3859 0.8212 29 1 1.9497 -5.1146 1.0216 30 1 -0.3477 -7.6558 2.3714 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878175600.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:46 Heat of formation + Delta-G solvation = 39.487877 kcal Electronic energy + Delta-G solvation = -13738.668766 eV Core-core repulsion = 11343.546547 eV Total energy + Delta-G solvation = -2395.122219 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.87478 -38.64615 -35.75927 -34.58777 -33.09598 -29.75462 -28.88379 -28.66322 -26.02167 -23.04018 -22.37794 -21.64148 -18.68707 -18.58095 -18.12856 -16.82125 -16.28841 -15.96365 -15.64687 -14.96326 -14.19540 -14.03553 -13.95836 -13.61794 -13.47015 -13.05017 -12.97338 -12.68163 -12.62419 -12.39834 -11.97193 -11.94849 -11.41427 -10.89988 -10.62388 -10.17994 -9.19507 -8.22598 -6.33033 0.66629 1.25986 1.41279 1.44165 1.52398 2.39573 2.53184 3.09542 3.13553 3.46877 3.62068 4.06742 4.26648 4.35640 4.45478 4.52159 4.60033 4.81494 4.89850 4.96458 4.97488 5.07548 5.11305 5.18980 5.44046 5.60383 5.96826 6.16766 6.47177 6.80848 7.36384 7.42094 8.88550 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.051206 B = 0.007032 C = 0.006848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.683685 B = 3981.104880 C = 4087.820129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.200 4.200 3 C -0.052 4.052 4 O 0.097 5.903 5 N -0.395 5.395 6 C 0.012 3.988 7 C 0.131 3.869 8 N -0.536 5.536 9 C 0.048 3.952 10 C 0.209 3.791 11 C -0.527 4.527 12 H 0.062 0.938 13 C 0.004 3.996 14 N -0.933 5.933 15 Si 0.971 3.029 16 H -0.266 1.266 17 H -0.281 1.281 18 H -0.270 1.270 19 H 0.070 0.930 20 H 0.101 0.899 21 H 0.060 0.940 22 H 0.266 0.734 23 H 0.096 0.904 24 H 0.031 0.969 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.008 0.992 28 H 0.015 0.985 29 H -0.036 1.036 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.202 15.331 -3.955 15.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.205 4.205 3 C -0.132 4.132 4 O 0.031 5.969 5 N -0.099 5.099 6 C -0.146 4.146 7 C 0.002 3.998 8 N -0.261 5.261 9 C -0.100 4.100 10 C 0.083 3.917 11 C -0.565 4.565 12 H 0.080 0.920 13 C -0.194 4.194 14 N -0.573 5.573 15 Si 0.795 3.205 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.195 1.195 19 H 0.088 0.912 20 H 0.120 0.880 21 H 0.079 0.921 22 H 0.282 0.718 23 H 0.114 0.886 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.026 0.974 28 H 0.033 0.967 29 H -0.019 1.019 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.043 14.906 -3.754 15.506 hybrid contribution -0.394 -1.200 0.212 1.281 sum 1.649 13.705 -3.542 14.251 Atomic orbital electron populations 1.20112 0.86011 1.03757 1.02965 1.21636 0.99906 0.91020 1.07923 1.26571 0.81490 1.02490 1.02688 1.84737 1.30555 1.14709 1.66947 1.73823 1.23067 0.92379 1.20675 1.23456 0.89228 0.98476 1.03411 1.20288 1.00757 0.87656 0.91077 1.62035 1.22955 1.27678 1.13429 1.22114 0.89016 0.99564 0.99346 1.19427 0.92548 0.82748 0.96980 1.21384 1.40172 1.01663 0.93321 0.91987 1.25895 0.95383 0.95974 1.02148 1.70070 1.43860 1.09255 1.34124 0.85419 0.78734 0.77385 0.78990 1.19117 1.20626 1.19487 0.91173 0.88040 0.92124 0.71794 0.88606 0.95128 0.92263 0.91774 0.97367 0.96703 1.01861 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 10.37 71.24 0.74 -0.82 16 2 C -0.20 -5.30 6.32 -19.74 -0.12 -5.43 16 3 C -0.05 -1.03 12.26 67.17 0.82 -0.21 16 4 O 0.10 2.65 11.20 71.60 0.80 3.45 16 5 N -0.39 -13.53 11.38 -49.55 -0.56 -14.09 16 6 C 0.01 0.42 5.94 43.58 0.26 0.68 16 7 C 0.13 5.16 5.47 85.56 0.47 5.63 16 8 N -0.54 -24.68 4.74 -931.64 -4.42 -29.10 16 9 C 0.05 2.11 9.18 127.69 1.17 3.28 16 10 C 0.21 11.36 4.72 85.56 0.40 11.77 16 11 C -0.53 -30.28 8.46 25.60 0.22 -30.07 16 12 H 0.06 3.51 7.12 -2.91 -0.02 3.48 16 13 C 0.00 0.25 5.46 84.65 0.46 0.71 16 14 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 15 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 20 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.06 1.46 7.65 -2.39 -0.02 1.44 16 22 H 0.27 2.02 8.06 -2.91 -0.02 2.00 16 23 H 0.10 3.57 7.44 -2.39 -0.02 3.55 16 24 H 0.03 1.25 8.12 -2.39 -0.02 1.23 16 25 H 0.06 2.40 6.75 -2.39 -0.02 2.39 16 26 H 0.06 2.92 6.76 -2.39 -0.02 2.90 16 27 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.01 0.85 7.93 -2.39 -0.02 0.83 16 29 H -0.04 -2.15 8.12 -2.39 -0.02 -2.17 16 30 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -68.13 260.36 3.67 -64.46 By element: Atomic # 1 Polarization: -1.88 SS G_CDS: 1.12 Total: -0.76 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 4.42 Total: -14.45 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -4.70 Total: -99.07 kcal Atomic # 8 Polarization: 2.65 SS G_CDS: 0.80 Total: 3.45 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -68.13 3.67 -64.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878175600.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.946 kcal (2) G-P(sol) polarization free energy of solvation -68.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds