Wall clock time and date at job start Sun Mar 29 2020 22:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38111 * 120.39043 * 2 1 4 4 C 1.39614 * 118.39447 * 180.26325 * 3 2 1 5 5 N 1.38542 * 120.51377 * 179.73149 * 4 3 2 6 6 C 1.46499 * 119.99875 * 359.72557 * 5 4 3 7 7 C 1.50701 * 109.46992 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99594 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99875 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47061 * 90.00257 * 11 9 7 13 13 H 1.48497 * 109.46906 * 209.99430 * 11 9 7 14 14 H 1.48498 * 109.47403 * 329.99876 * 11 9 7 15 15 N 1.32978 * 118.97249 * 359.46023 * 4 3 2 16 16 C 1.31998 * 120.65896 * 0.27465 * 15 4 3 17 17 F 1.35106 * 119.11597 * 179.97438 * 16 15 4 18 18 N 1.32043 * 121.75997 * 0.02562 * 16 15 4 19 19 H 1.09002 * 109.47375 * 270.28444 * 1 2 3 20 20 H 1.09004 * 109.46935 * 30.28388 * 1 2 3 21 21 H 1.08996 * 109.47782 * 150.28183 * 1 2 3 22 22 H 1.08002 * 120.79865 * 359.97438 * 3 2 1 23 23 H 0.97000 * 119.99704 * 179.71787 * 5 4 3 24 24 H 1.09002 * 109.47391 * 59.99672 * 6 5 4 25 25 H 1.09001 * 109.46813 * 299.99728 * 6 5 4 26 26 H 0.97002 * 119.99739 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2056 1.1913 0.0000 4 6 3.6009 1.1427 -0.0056 5 7 4.3455 2.3110 -0.0115 6 6 3.6692 3.6106 -0.0178 7 6 4.6977 4.7121 -0.0227 8 1 5.7498 4.4685 -0.0217 9 6 4.2954 6.0308 -0.0296 10 7 5.1930 6.9920 -0.0344 11 14 2.4755 6.4521 -0.0322 12 1 1.9930 6.5711 1.3673 13 1 2.2670 7.7415 -0.7388 14 1 1.7199 5.3790 -0.7268 15 7 4.2042 -0.0423 0.0002 16 6 3.4976 -1.1573 0.0057 17 9 4.1427 -2.3444 0.0110 18 7 2.1773 -1.1434 0.0051 19 1 -0.3634 0.0051 1.0277 20 1 -0.3633 0.8875 -0.5183 21 1 -0.3634 -0.8924 -0.5094 22 1 1.6851 2.1377 -0.0004 23 1 5.3145 2.2685 -0.0112 24 1 3.0457 3.7001 0.8718 25 1 3.0456 3.6913 -0.9082 26 1 4.9100 7.9198 -0.0389 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884488771.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:05 Heat of formation + Delta-G solvation = 5.396411 kcal Electronic energy + Delta-G solvation = -13216.863253 eV Core-core repulsion = 10631.376501 eV Total energy + Delta-G solvation = -2585.486752 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.082 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.88794 -40.59689 -36.25385 -33.94084 -32.74614 -30.99762 -28.38835 -27.56956 -23.92728 -22.45311 -21.49361 -18.59751 -17.47133 -16.99738 -16.31541 -15.55073 -15.03076 -14.81176 -14.23104 -13.98314 -13.56236 -13.51499 -13.09043 -12.60813 -12.45186 -12.26438 -11.16655 -11.14061 -10.84893 -10.62907 -10.16715 -9.69437 -9.41735 -9.08127 -8.88575 -7.70805 -6.37426 -4.42362 1.14331 1.54182 3.06952 3.10516 3.16369 3.19645 3.78197 3.93726 4.13908 4.42113 4.95637 5.00271 5.26267 5.39779 5.52586 5.75291 5.84006 5.95892 6.26573 6.52455 6.67932 6.98668 7.11263 7.55061 7.95808 8.21500 8.31903 8.63056 9.18433 10.74569 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.043914 B = 0.007820 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.462735 B = 3579.662395 C = 4196.677621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.223 3.777 3 C -0.305 4.305 4 C 0.469 3.531 5 N -0.670 5.670 6 C 0.221 3.779 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.080 3.920 10 N -0.885 5.885 11 Si 0.878 3.122 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.263 1.263 15 N -0.612 5.612 16 C 0.536 3.464 17 F -0.088 7.088 18 N -0.595 5.595 19 H 0.085 0.915 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.149 0.851 23 H 0.409 0.591 24 H 0.024 0.976 25 H 0.029 0.971 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.934 -9.835 0.051 13.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.083 3.917 3 C -0.334 4.334 4 C 0.222 3.778 5 N -0.296 5.296 6 C 0.099 3.901 7 C -0.587 4.587 8 H 0.101 0.899 9 C -0.125 4.125 10 N -0.522 5.522 11 Si 0.704 3.296 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.187 1.187 15 N -0.345 5.345 16 C 0.254 3.746 17 F -0.068 7.068 18 N -0.324 5.324 19 H 0.103 0.897 20 H 0.101 0.899 21 H 0.100 0.900 22 H 0.167 0.833 23 H 0.246 0.754 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.510 -10.217 0.047 13.298 hybrid contribution -0.523 0.887 0.022 1.030 sum -9.033 -9.330 0.070 12.987 Atomic orbital electron populations 1.20744 0.87646 1.03912 1.03617 1.21018 0.96771 0.86240 0.87630 1.21984 0.93619 1.00962 1.16843 1.18307 0.88495 0.85498 0.85477 1.45244 1.09645 1.02413 1.72277 1.19771 0.94716 0.78993 0.96580 1.20965 0.94187 0.89330 1.54198 0.89932 1.24795 0.98109 0.95841 0.93751 1.69866 1.33783 1.00135 1.48367 0.86814 0.84988 0.78733 0.79029 1.19645 1.20607 1.18721 1.67133 1.41846 0.97364 1.28205 1.18441 0.84013 0.80462 0.91696 1.91666 1.80640 1.41646 1.92849 1.67562 1.07081 1.31816 1.25915 0.89674 0.89940 0.90035 0.83311 0.75424 0.95785 0.95332 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.21 36.00 0.37 -0.68 15 2 C 0.22 3.35 6.81 -82.34 -0.56 2.79 15 3 C -0.30 -5.03 9.07 -39.11 -0.35 -5.38 15 4 C 0.47 8.81 7.71 -154.79 -1.19 7.61 15 5 N -0.67 -13.27 5.70 -61.45 -0.35 -13.62 15 6 C 0.22 4.77 3.75 -5.19 -0.02 4.75 15 7 C -0.55 -14.15 9.83 -34.44 -0.34 -14.49 15 8 H 0.08 2.30 7.84 -52.49 -0.41 1.89 15 9 C 0.08 2.11 5.47 -17.82 -0.10 2.02 15 10 N -0.89 -25.13 13.96 55.43 0.77 -24.35 15 11 Si 0.88 19.20 27.47 -169.99 -4.67 14.54 15 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 14 H -0.26 -5.36 6.54 56.52 0.37 -4.99 15 15 N -0.61 -11.68 10.48 -14.17 -0.15 -11.83 15 16 C 0.54 9.66 9.46 -91.77 -0.87 8.79 15 17 F -0.09 -1.49 17.32 2.25 0.04 -1.45 15 18 N -0.59 -10.06 10.38 -11.23 -0.12 -10.18 15 19 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.08 0.72 8.10 -51.93 -0.42 0.30 15 21 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.15 2.27 6.86 -52.49 -0.36 1.91 15 23 H 0.41 8.02 8.45 -40.82 -0.34 7.67 15 24 H 0.02 0.51 7.39 -51.93 -0.38 0.13 15 25 H 0.03 0.61 7.04 -51.93 -0.37 0.25 15 26 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 LS Contribution 238.65 15.07 3.60 3.60 Total: -1.00 -28.19 238.65 -6.24 -34.43 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -2.30 Total: 3.47 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -3.06 Total: 5.40 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.16 Total: -59.98 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.67 Total: 14.54 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.19 -6.24 -34.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884488771.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.822 kcal (2) G-P(sol) polarization free energy of solvation -28.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds