Wall clock time and date at job start Sun Mar 29 2020 22:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38111 * 120.39043 * 2 1 4 4 C 1.39614 * 118.39447 * 180.26325 * 3 2 1 5 5 N 1.38542 * 120.51377 * 179.73149 * 4 3 2 6 6 C 1.46499 * 119.99875 * 359.72557 * 5 4 3 7 7 C 1.50701 * 109.46992 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99594 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99875 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47061 * 90.00257 * 11 9 7 13 13 H 1.48497 * 109.46906 * 209.99430 * 11 9 7 14 14 H 1.48498 * 109.47403 * 329.99876 * 11 9 7 15 15 N 1.32978 * 118.97249 * 359.46023 * 4 3 2 16 16 C 1.31998 * 120.65896 * 0.27465 * 15 4 3 17 17 F 1.35106 * 119.11597 * 179.97438 * 16 15 4 18 18 N 1.32043 * 121.75997 * 0.02562 * 16 15 4 19 19 H 1.09002 * 109.47375 * 270.28444 * 1 2 3 20 20 H 1.09004 * 109.46935 * 30.28388 * 1 2 3 21 21 H 1.08996 * 109.47782 * 150.28183 * 1 2 3 22 22 H 1.08002 * 120.79865 * 359.97438 * 3 2 1 23 23 H 0.97000 * 119.99704 * 179.71787 * 5 4 3 24 24 H 1.09002 * 109.47391 * 59.99672 * 6 5 4 25 25 H 1.09001 * 109.46813 * 299.99728 * 6 5 4 26 26 H 0.97002 * 119.99739 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2056 1.1913 0.0000 4 6 3.6009 1.1427 -0.0056 5 7 4.3455 2.3110 -0.0115 6 6 3.6692 3.6106 -0.0178 7 6 4.6977 4.7121 -0.0227 8 1 5.7498 4.4685 -0.0217 9 6 4.2954 6.0308 -0.0296 10 7 5.1930 6.9920 -0.0344 11 14 2.4755 6.4521 -0.0322 12 1 1.9930 6.5711 1.3673 13 1 2.2670 7.7415 -0.7388 14 1 1.7199 5.3790 -0.7268 15 7 4.2042 -0.0423 0.0002 16 6 3.4976 -1.1573 0.0057 17 9 4.1427 -2.3444 0.0110 18 7 2.1773 -1.1434 0.0051 19 1 -0.3634 0.0051 1.0277 20 1 -0.3633 0.8875 -0.5183 21 1 -0.3634 -0.8924 -0.5094 22 1 1.6851 2.1377 -0.0004 23 1 5.3145 2.2685 -0.0112 24 1 3.0457 3.7001 0.8718 25 1 3.0456 3.6913 -0.9082 26 1 4.9100 7.9198 -0.0389 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884488771.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:05 Heat of formation + Delta-G solvation = -13.506822 kcal Electronic energy + Delta-G solvation = -13217.682959 eV Core-core repulsion = 10631.376501 eV Total energy + Delta-G solvation = -2586.306457 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.082 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.23286 -41.93579 -37.75017 -35.37172 -34.52701 -32.40155 -29.85328 -28.91913 -25.45908 -23.88362 -23.01205 -20.11184 -18.82946 -18.74428 -17.67141 -16.99248 -16.67031 -16.26960 -15.63763 -15.48793 -15.00140 -14.78469 -14.42875 -14.19146 -13.69060 -13.07120 -12.97573 -12.73730 -12.21614 -12.03547 -11.82388 -11.65045 -10.91233 -10.67344 -10.43779 -9.16873 -8.37719 -6.48991 -0.16376 0.20173 1.40949 1.42603 1.52599 1.69824 2.31877 2.41441 2.60700 2.97975 3.20412 3.67516 4.11593 4.33279 4.51014 4.58423 4.81653 4.88384 4.98165 4.99785 5.22285 5.31363 5.65156 5.91733 6.34627 6.44735 6.62937 6.91648 7.17341 8.77884 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.043914 B = 0.007820 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.462735 B = 3579.662395 C = 4196.677621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.228 3.772 3 C -0.306 4.306 4 C 0.454 3.546 5 N -0.683 5.683 6 C 0.235 3.765 7 C -0.559 4.559 8 H 0.041 0.959 9 C 0.018 3.982 10 N -0.939 5.939 11 Si 0.950 3.050 12 H -0.261 1.261 13 H -0.284 1.284 14 H -0.231 1.231 15 N -0.633 5.633 16 C 0.526 3.474 17 F -0.086 7.086 18 N -0.596 5.596 19 H 0.106 0.894 20 H 0.105 0.895 21 H 0.091 0.909 22 H 0.167 0.833 23 H 0.404 0.596 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.225 -10.507 0.058 16.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.089 3.911 3 C -0.335 4.335 4 C 0.209 3.791 5 N -0.309 5.309 6 C 0.112 3.888 7 C -0.597 4.597 8 H 0.060 0.940 9 C -0.182 4.182 10 N -0.577 5.577 11 Si 0.771 3.229 12 H -0.186 1.186 13 H -0.209 1.209 14 H -0.153 1.153 15 N -0.367 5.367 16 C 0.243 3.757 17 F -0.066 7.066 18 N -0.325 5.325 19 H 0.124 0.876 20 H 0.124 0.876 21 H 0.109 0.891 22 H 0.185 0.815 23 H 0.240 0.760 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.813 -10.943 0.053 16.103 hybrid contribution 0.568 0.994 0.025 1.145 sum -11.246 -9.948 0.079 15.015 Atomic orbital electron populations 1.20943 0.83760 1.05561 1.05347 1.21845 0.98953 0.85048 0.85300 1.22246 0.92464 1.02399 1.16359 1.18501 0.89469 0.84894 0.86210 1.45054 1.09424 1.02463 1.73971 1.19514 0.93457 0.78295 0.97485 1.21243 0.93585 0.91154 1.53678 0.94030 1.25839 1.03743 0.95506 0.93070 1.70028 1.36695 1.00722 1.50282 0.85682 0.78383 0.79034 0.79762 1.18573 1.20934 1.15343 1.67024 1.42896 0.97946 1.28852 1.18605 0.84568 0.80349 0.92155 1.91665 1.80748 1.41350 1.92839 1.67725 1.06354 1.32785 1.25611 0.87622 0.87625 0.89071 0.81504 0.76040 0.94364 0.94195 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 10.21 71.23 0.73 -0.84 15 2 C 0.23 6.08 6.81 42.42 0.29 6.36 15 3 C -0.31 -9.16 9.07 22.57 0.20 -8.95 15 4 C 0.45 16.48 7.71 133.16 1.03 17.51 15 5 N -0.68 -26.81 5.70 -348.34 -1.99 -28.80 15 6 C 0.24 9.76 3.75 85.63 0.32 10.08 15 7 C -0.56 -29.23 9.83 25.60 0.25 -28.98 15 8 H 0.04 2.44 7.84 -2.91 -0.02 2.42 15 9 C 0.02 0.96 5.47 84.66 0.46 1.42 15 10 N -0.94 -54.67 13.96 21.45 0.30 -54.37 15 11 Si 0.95 38.17 27.47 68.60 1.88 40.05 15 12 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 13 H -0.28 -11.47 7.11 99.48 0.71 -10.77 15 14 H -0.23 -8.03 6.54 99.48 0.65 -7.37 15 15 N -0.63 -23.84 10.48 -198.74 -2.08 -25.92 15 16 C 0.53 18.34 9.46 180.75 1.71 20.05 15 17 F -0.09 -2.85 17.32 44.97 0.78 -2.07 15 18 N -0.60 -18.76 10.38 -189.45 -1.97 -20.73 15 19 H 0.11 1.33 8.14 -2.39 -0.02 1.31 15 20 H 0.11 1.24 8.10 -2.38 -0.02 1.22 15 21 H 0.09 1.32 8.14 -2.39 -0.02 1.30 15 22 H 0.17 4.34 6.86 -2.91 -0.02 4.32 15 23 H 0.40 16.35 8.45 -92.71 -0.78 15.56 15 24 H 0.04 1.50 7.39 -2.39 -0.02 1.48 15 25 H 0.04 1.58 7.04 -2.39 -0.02 1.57 15 26 H 0.27 14.72 8.31 -92.71 -0.77 13.95 15 Total: -1.00 -61.80 238.65 2.29 -59.51 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.38 Total: 15.66 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 4.99 Total: 16.66 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -5.74 Total: -129.82 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 1.88 Total: 40.05 kcal Total: -61.80 2.29 -59.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884488771.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.003 kcal (2) G-P(sol) polarization free energy of solvation -61.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds