Wall clock time and date at job start Sun Mar 29 2020 21:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31449 * 1 3 3 Si 1.86803 * 119.99839 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00138 * 3 2 1 5 5 H 1.48494 * 109.46800 * 210.00186 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99888 * 3 2 1 7 7 C 1.38745 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00332 * 179.97438 * 7 2 1 9 9 O 1.34930 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.34303 * 117.00103 * 179.97438 * 9 7 2 11 11 O 1.21216 * 120.00306 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00098 * 179.97438 * 10 9 7 13 13 C 1.53004 * 109.47281 * 179.97438 * 12 10 9 14 14 H 1.08997 * 115.54886 * 29.28253 * 13 12 10 15 15 C 1.52993 * 117.50007 * 243.60756 * 13 12 10 16 16 C 1.52998 * 60.00353 * 252.51206 * 15 13 12 17 17 H 1.09000 * 117.50436 * 107.48862 * 16 15 13 18 18 C 1.52995 * 117.49703 * 252.51486 * 16 15 13 19 19 C 1.53009 * 117.49857 * 197.24239 * 18 16 15 20 20 C 1.53001 * 117.50027 * 128.61734 * 18 16 15 21 21 H 0.97001 * 119.99860 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46880 * 299.99801 * 12 10 9 23 23 H 1.08998 * 109.47163 * 60.00248 * 12 10 9 24 24 H 1.09005 * 117.50068 * 359.97438 * 15 13 12 25 25 H 1.09002 * 117.50252 * 144.99468 * 15 13 12 26 26 H 1.08999 * 115.55182 * 342.94545 * 18 16 15 27 27 H 1.08999 * 117.49412 * 359.97438 * 19 18 16 28 28 H 1.08997 * 117.50139 * 145.01824 * 19 18 16 29 29 H 1.08996 * 117.50208 * 214.97343 * 20 18 16 30 30 H 1.08995 * 117.50107 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 2.4960 2.0465 1.4001 5 1 3.5459 1.4402 -0.7001 6 1 1.4458 2.6527 -0.7001 7 6 2.0083 -1.2015 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4964 0.0005 11 8 3.2757 -3.4330 0.0001 12 6 1.3811 -4.8392 0.0011 13 6 2.4349 -5.9485 0.0004 14 1 3.3809 -5.6986 0.4806 15 6 2.4831 -6.8762 -1.2153 16 6 1.9413 -7.3918 0.1194 17 1 0.8659 -7.5511 0.1983 18 6 2.8135 -8.3742 0.9037 19 6 2.1384 -9.1949 2.0045 20 6 3.0897 -8.0550 2.3743 21 1 -0.4850 0.8401 0.0004 22 1 0.7587 -4.9294 0.8914 23 1 0.7580 -4.9299 -0.8886 24 1 1.7638 -6.6966 -2.0144 25 1 3.4609 -7.2366 -1.5349 26 1 3.6098 -8.8537 0.3346 27 1 1.0731 -9.0347 2.1702 28 1 2.4905 -10.2147 2.1597 29 1 4.0676 -8.3250 2.7729 30 1 2.6505 -7.1451 2.7830 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884641985.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:58 Heat of formation + Delta-G solvation = -42.794504 kcal Electronic energy + Delta-G solvation = -13274.078660 eV Core-core repulsion = 10843.095658 eV Total energy + Delta-G solvation = -2430.983002 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.19194 -38.27051 -35.64691 -34.72970 -32.09234 -29.28930 -25.21847 -23.57129 -22.43200 -21.52067 -19.84838 -19.31284 -17.66004 -16.51034 -15.60501 -15.23715 -14.75728 -14.40296 -14.13452 -13.69307 -13.07945 -12.36337 -12.06715 -11.63461 -11.55383 -11.37213 -11.11875 -10.99241 -10.74274 -10.56018 -10.40713 -10.30249 -9.75839 -9.68768 -9.32654 -8.92168 -8.53246 -6.36402 -4.04231 3.14757 3.21396 3.27686 3.58040 3.64404 3.99803 4.08283 4.49012 4.77883 4.88689 4.98083 5.14517 5.18244 5.26415 5.41775 5.54925 5.62002 5.73983 5.88442 5.94966 6.01308 6.10832 6.13297 6.21798 6.31978 6.67248 6.90013 7.44748 8.01030 8.78558 9.12813 9.92742 10.81997 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.064906 B = 0.005719 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.288547 B = 4895.170862 C = 4925.868863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.278 1.278 7 C -0.381 4.381 8 H 0.095 0.905 9 O -0.218 6.218 10 C 0.401 3.599 11 O -0.556 6.556 12 C -0.075 4.075 13 C -0.124 4.124 14 H 0.119 0.881 15 C -0.170 4.170 16 C -0.127 4.127 17 H 0.105 0.895 18 C -0.121 4.121 19 C -0.180 4.180 20 C -0.177 4.177 21 H 0.268 0.732 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.949 -13.536 1.352 13.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.191 1.191 6 H -0.204 1.204 7 C -0.458 4.458 8 H 0.112 0.888 9 O -0.126 6.126 10 C 0.247 3.753 11 O -0.453 6.453 12 C -0.113 4.113 13 C -0.142 4.142 14 H 0.137 0.863 15 C -0.207 4.207 16 C -0.145 4.145 17 H 0.123 0.877 18 C -0.139 4.139 19 C -0.216 4.216 20 C -0.214 4.214 21 H 0.078 0.922 22 H 0.112 0.888 23 H 0.109 0.891 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.121 0.879 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.070 -13.341 1.346 13.568 hybrid contribution 0.379 0.792 -0.025 0.879 sum 2.449 -12.549 1.321 12.854 Atomic orbital electron populations 1.69998 1.05984 1.27553 1.47010 1.25322 0.95797 0.98824 0.96327 0.85689 0.79039 0.79866 0.78687 1.19927 1.19143 1.20366 1.21213 0.92340 0.79981 1.52246 0.88779 1.83882 1.39422 1.13433 1.75834 1.23118 0.86730 0.87232 0.78203 1.90533 1.15845 1.88071 1.50839 1.20651 0.97294 0.89136 1.04214 1.22204 1.00971 0.88783 1.02205 0.86300 1.23136 1.02373 1.03904 0.91296 1.21887 0.98501 0.94613 0.99529 0.87707 1.21724 1.01146 1.00603 0.90415 1.22970 0.98830 0.96092 1.03756 1.22975 1.00544 1.00083 0.97788 0.92171 0.88850 0.89109 0.88770 0.88932 0.87917 0.88815 0.89136 0.89053 0.88385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.91 13.67 55.48 0.76 -25.15 16 2 C 0.04 1.17 5.49 -17.53 -0.10 1.08 16 3 Si 0.94 21.68 29.55 -169.99 -5.02 16.66 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.38 -11.56 9.65 30.92 0.30 -11.26 16 8 H 0.09 2.87 6.86 -52.49 -0.36 2.51 16 9 O -0.22 -6.41 9.75 -20.71 -0.20 -6.61 16 10 C 0.40 10.09 7.91 36.00 0.28 10.38 16 11 O -0.56 -15.20 14.80 -19.06 -0.28 -15.48 16 12 C -0.08 -1.38 6.09 -27.88 -0.17 -1.55 16 13 C -0.12 -2.00 5.06 -90.62 -0.46 -2.46 16 14 H 0.12 2.18 7.30 -51.93 -0.38 1.80 16 15 C -0.17 -2.31 9.90 -26.74 -0.26 -2.57 16 16 C -0.13 -1.63 5.59 -90.62 -0.51 -2.13 16 17 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.12 -1.39 5.87 -90.62 -0.53 -1.92 16 19 C -0.18 -1.80 10.25 -26.72 -0.27 -2.07 16 20 C -0.18 -2.00 10.18 -26.73 -0.27 -2.27 16 21 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 22 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 23 H 0.09 1.53 7.87 -51.93 -0.41 1.12 16 24 H 0.09 1.20 8.03 -51.93 -0.42 0.79 16 25 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 268.57 15.07 4.05 4.05 Total: -1.00 -32.89 268.57 -6.77 -39.66 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.08 Total: 1.66 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -1.99 Total: -14.79 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.76 Total: -25.15 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.48 Total: -22.09 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.89 -6.77 -39.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884641985.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.135 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds