Wall clock time and date at job start Sun Mar 29 2020 21:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31449 * 1 3 3 Si 1.86803 * 119.99839 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00138 * 3 2 1 5 5 H 1.48494 * 109.46800 * 210.00186 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99888 * 3 2 1 7 7 C 1.38745 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00332 * 179.97438 * 7 2 1 9 9 O 1.34930 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.34303 * 117.00103 * 179.97438 * 9 7 2 11 11 O 1.21216 * 120.00306 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00098 * 179.97438 * 10 9 7 13 13 C 1.53004 * 109.47281 * 179.97438 * 12 10 9 14 14 H 1.08997 * 115.54886 * 29.28253 * 13 12 10 15 15 C 1.52993 * 117.50007 * 243.60756 * 13 12 10 16 16 C 1.52998 * 60.00353 * 252.51206 * 15 13 12 17 17 H 1.09000 * 117.50436 * 107.48862 * 16 15 13 18 18 C 1.52995 * 117.49703 * 252.51486 * 16 15 13 19 19 C 1.53009 * 117.49857 * 197.24239 * 18 16 15 20 20 C 1.53001 * 117.50027 * 128.61734 * 18 16 15 21 21 H 0.97001 * 119.99860 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46880 * 299.99801 * 12 10 9 23 23 H 1.08998 * 109.47163 * 60.00248 * 12 10 9 24 24 H 1.09005 * 117.50068 * 359.97438 * 15 13 12 25 25 H 1.09002 * 117.50252 * 144.99468 * 15 13 12 26 26 H 1.08999 * 115.55182 * 342.94545 * 18 16 15 27 27 H 1.08999 * 117.49412 * 359.97438 * 19 18 16 28 28 H 1.08997 * 117.50139 * 145.01824 * 19 18 16 29 29 H 1.08996 * 117.50208 * 214.97343 * 20 18 16 30 30 H 1.08995 * 117.50107 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 2.4960 2.0465 1.4001 5 1 3.5459 1.4402 -0.7001 6 1 1.4458 2.6527 -0.7001 7 6 2.0083 -1.2015 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4964 0.0005 11 8 3.2757 -3.4330 0.0001 12 6 1.3811 -4.8392 0.0011 13 6 2.4349 -5.9485 0.0004 14 1 3.3809 -5.6986 0.4806 15 6 2.4831 -6.8762 -1.2153 16 6 1.9413 -7.3918 0.1194 17 1 0.8659 -7.5511 0.1983 18 6 2.8135 -8.3742 0.9037 19 6 2.1384 -9.1949 2.0045 20 6 3.0897 -8.0550 2.3743 21 1 -0.4850 0.8401 0.0004 22 1 0.7587 -4.9294 0.8914 23 1 0.7580 -4.9299 -0.8886 24 1 1.7638 -6.6966 -2.0144 25 1 3.4609 -7.2366 -1.5349 26 1 3.6098 -8.8537 0.3346 27 1 1.0731 -9.0347 2.1702 28 1 2.4905 -10.2147 2.1597 29 1 4.0676 -8.3250 2.7729 30 1 2.6505 -7.1451 2.7830 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884641985.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:57 Heat of formation + Delta-G solvation = -61.774126 kcal Electronic energy + Delta-G solvation = -13274.901678 eV Core-core repulsion = 10843.095658 eV Total energy + Delta-G solvation = -2431.806020 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.08398 -39.52873 -37.34759 -36.19848 -34.30754 -30.85526 -27.37157 -24.60128 -23.35663 -22.99655 -21.19454 -20.63451 -19.87346 -18.44005 -17.02022 -16.73522 -16.33660 -16.27370 -15.73594 -14.87498 -14.40891 -14.26064 -13.65207 -13.44403 -12.97220 -12.55074 -12.37851 -12.32286 -12.20797 -12.15335 -11.96634 -11.74926 -11.50729 -11.03913 -10.74733 -10.69853 -10.34998 -8.54664 -6.34972 1.31048 1.33416 1.50948 1.65838 2.10849 2.54839 2.89823 2.96689 3.09059 3.66162 3.84334 3.97758 4.12824 4.21688 4.29122 4.43034 4.56238 4.64891 4.70880 4.83546 4.90114 4.97975 5.06158 5.19624 5.26876 5.29347 5.31809 5.42431 5.83272 6.67988 6.90637 7.77672 8.66344 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.064906 B = 0.005719 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.288547 B = 4895.170862 C = 4925.868863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.005 4.005 3 Si 1.018 2.982 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.424 4.424 8 H 0.079 0.921 9 O -0.249 6.249 10 C 0.396 3.604 11 O -0.583 6.583 12 C -0.062 4.062 13 C -0.153 4.153 14 H 0.090 0.910 15 C -0.164 4.164 16 C -0.099 4.099 17 H 0.121 0.879 18 C -0.134 4.134 19 C -0.160 4.160 20 C -0.191 4.191 21 H 0.279 0.721 22 H 0.110 0.890 23 H 0.112 0.888 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.698 -14.364 1.243 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.204 4.204 3 Si 0.837 3.163 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.182 1.182 7 C -0.499 4.499 8 H 0.097 0.903 9 O -0.157 6.157 10 C 0.244 3.756 11 O -0.481 6.481 12 C -0.100 4.100 13 C -0.172 4.172 14 H 0.109 0.891 15 C -0.201 4.201 16 C -0.117 4.117 17 H 0.139 0.861 18 C -0.152 4.152 19 C -0.197 4.197 20 C -0.228 4.228 21 H 0.088 0.912 22 H 0.128 0.872 23 H 0.130 0.870 24 H 0.124 0.876 25 H 0.118 0.882 26 H 0.129 0.871 27 H 0.118 0.882 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.809 -14.200 1.240 14.368 hybrid contribution 0.473 0.951 0.022 1.062 sum 2.283 -13.249 1.262 13.504 Atomic orbital electron populations 1.70077 1.07638 1.29376 1.47077 1.26544 0.96902 1.02344 0.94656 0.84627 0.77648 0.74526 0.79547 1.18425 1.18895 1.18235 1.21411 0.92099 0.81382 1.55042 0.90300 1.83906 1.40445 1.14328 1.77049 1.24505 0.86793 0.88398 0.75856 1.90499 1.17380 1.88636 1.51572 1.20773 0.97812 0.85504 1.05889 1.21999 0.99644 0.90093 1.05430 0.89146 1.23270 1.03280 1.02114 0.91401 1.21967 0.99526 0.91703 0.98496 0.86145 1.21812 1.01819 1.01082 0.90531 1.23068 0.98861 0.96439 1.01320 1.22995 1.01579 1.00429 0.97803 0.91173 0.87177 0.87031 0.87595 0.88200 0.87052 0.88232 0.87222 0.88263 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.35 13.67 21.62 0.30 -54.06 16 2 C 0.00 -0.26 5.49 84.87 0.47 0.21 16 3 Si 1.02 44.27 29.55 68.60 2.03 46.30 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 5 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 7 C -0.42 -26.48 9.65 67.94 0.66 -25.83 16 8 H 0.08 5.02 6.86 -2.91 -0.02 5.00 16 9 O -0.25 -15.09 9.75 14.85 0.14 -14.94 16 10 C 0.40 20.54 7.91 71.24 0.56 21.11 16 11 O -0.58 -33.12 14.80 20.76 0.31 -32.81 16 12 C -0.06 -2.28 6.09 29.85 0.18 -2.10 16 13 C -0.15 -4.89 5.06 -10.79 -0.05 -4.94 16 14 H 0.09 3.42 7.30 -2.39 -0.02 3.40 16 15 C -0.16 -4.15 9.90 30.59 0.30 -3.84 16 16 C -0.10 -2.32 5.59 -10.79 -0.06 -2.38 16 17 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 18 C -0.13 -2.80 5.87 -10.79 -0.06 -2.86 16 19 C -0.16 -2.75 10.25 30.60 0.31 -2.44 16 20 C -0.19 -4.08 10.18 30.60 0.31 -3.77 16 21 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 22 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 23 H 0.11 3.61 7.87 -2.39 -0.02 3.59 16 24 H 0.11 2.44 8.03 -2.38 -0.02 2.42 16 25 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -72.78 268.57 6.51 -66.27 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 1.12 Total: 16.08 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 2.62 Total: -26.84 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.30 Total: -54.06 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: 0.45 Total: -47.76 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -72.78 6.51 -66.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884641985.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.498 kcal (2) G-P(sol) polarization free energy of solvation -72.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds