Wall clock time and date at job start Sun Mar 29 2020 21:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47006 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99731 * 179.97438 * 10 9 7 12 12 O 1.21587 * 120.00334 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99868 * 179.97438 * 11 10 9 14 14 C 1.48151 * 127.83779 * 180.02562 * 13 11 10 15 15 C 1.54388 * 104.62007 * 140.41326 * 14 13 11 16 16 H 1.08996 * 117.61546 * 244.77844 * 15 14 13 17 17 C 1.53003 * 118.12317 * 89.20187 * 15 14 13 18 18 C 1.54284 * 104.95988 * 23.86498 * 15 14 13 19 19 H 1.09008 * 121.81614 * 222.18129 * 18 15 14 20 20 C 1.48151 * 127.83940 * 359.67814 * 13 11 10 21 21 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46909 * 299.99046 * 9 7 2 23 23 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 24 24 H 0.96989 * 120.00004 * 359.97438 * 10 9 7 25 25 H 1.09005 * 110.40311 * 259.19361 * 14 13 11 26 26 H 1.08994 * 110.40852 * 21.50252 * 14 13 11 27 27 H 1.09000 * 117.44062 * 16.11309 * 17 15 14 28 28 H 1.09004 * 117.44224 * 160.80918 * 17 15 14 29 29 H 1.08998 * 110.40012 * 338.37094 * 20 13 11 30 30 H 1.09001 * 110.40339 * 100.80230 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5586 -5.1056 0.0020 13 7 2.6298 -5.9077 0.0005 14 6 2.3311 -7.3587 0.0004 15 6 3.3798 -7.9724 -0.9521 16 1 3.0187 -8.4348 -1.8707 17 6 4.7195 -8.4155 -0.3606 18 6 4.5525 -6.9698 -0.9525 19 1 5.0743 -6.6961 -1.8696 20 6 4.1097 -5.8381 -0.0072 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6242 -2.5567 0.8904 23 1 0.6248 -2.5571 -0.8896 24 1 3.1568 -3.4353 0.0002 25 1 2.4425 -7.7697 1.0039 26 1 1.3234 -7.5393 -0.3736 27 1 4.7773 -8.5303 0.7218 28 1 5.3156 -9.1208 -0.9397 29 1 4.4427 -4.8731 -0.3891 30 1 4.5033 -6.0077 0.9950 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885367948.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:51 Heat of formation + Delta-G solvation = 3.608556 kcal Electronic energy + Delta-G solvation = -13612.062750 eV Core-core repulsion = 11215.384687 eV Total energy + Delta-G solvation = -2396.678063 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.10950 -38.06333 -34.38763 -33.30303 -32.20290 -28.54452 -27.10476 -25.20900 -22.59385 -21.57061 -20.16134 -19.44523 -18.16881 -16.65457 -15.81025 -15.39537 -15.18449 -13.87637 -13.82085 -13.58816 -13.24451 -12.74572 -12.39241 -12.01435 -11.89815 -11.81381 -11.54282 -10.97868 -10.77078 -10.30273 -10.18426 -10.13853 -9.47221 -8.77580 -8.70408 -8.51338 -7.85729 -6.49636 -4.22655 3.06409 3.30383 3.38948 3.40855 3.59987 3.76856 4.41827 4.44186 4.50374 4.61454 4.87728 5.01757 5.08073 5.29545 5.41711 5.49585 5.62752 5.79133 5.83040 5.96444 6.01479 6.34100 6.96079 7.27917 7.38883 7.51096 7.86933 8.30099 8.62558 8.80656 9.25204 9.51881 10.90674 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.059455 B = 0.006502 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.833884 B = 4305.452068 C = 4691.442751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.622 4.622 8 H 0.056 0.944 9 C 0.257 3.743 10 N -0.722 5.722 11 C 0.717 3.283 12 O -0.599 6.599 13 N -0.648 5.648 14 C 0.150 3.850 15 C -0.173 4.173 16 H 0.117 0.883 17 C -0.142 4.142 18 C -0.179 4.179 19 H 0.121 0.879 20 C 0.131 3.869 21 H 0.273 0.727 22 H 0.015 0.985 23 H 0.015 0.985 24 H 0.388 0.612 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.379 -13.797 -0.747 17.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.183 4.183 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.660 4.660 8 H 0.074 0.926 9 C 0.135 3.865 10 N -0.374 5.374 11 C 0.419 3.581 12 O -0.478 6.478 13 N -0.388 5.388 14 C 0.026 3.974 15 C -0.192 4.192 16 H 0.135 0.865 17 C -0.179 4.179 18 C -0.199 4.199 19 H 0.139 0.861 20 C 0.007 3.993 21 H 0.083 0.917 22 H 0.033 0.967 23 H 0.033 0.967 24 H 0.221 0.779 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.135 -12.120 -0.735 15.816 hybrid contribution 0.741 -1.675 -0.141 1.837 sum 10.876 -13.795 -0.876 17.589 Atomic orbital electron populations 1.70750 1.06861 1.31087 1.44950 1.25878 0.96427 1.02673 0.93337 0.83437 0.74784 0.74847 0.76532 1.20543 1.21321 1.21301 1.22051 0.94526 0.91463 1.57999 0.92577 1.19065 0.88501 0.82543 0.96363 1.45526 1.10787 1.03848 1.77224 1.15603 0.84070 0.80309 0.78088 1.90869 1.13715 1.83837 1.59380 1.48403 1.05374 1.05340 1.79712 1.21503 0.98638 0.79364 0.97882 1.23732 0.90118 1.03180 1.02172 0.86530 1.23659 0.98046 0.95273 1.00938 1.24244 1.03747 0.89619 1.02243 0.86096 1.21592 0.81004 0.98163 0.98522 0.91664 0.96673 0.96716 0.77856 0.91542 0.89598 0.88507 0.87984 0.90101 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.65 55.43 0.76 -26.97 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 24.66 29.90 -169.99 -5.08 19.58 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.62 -17.52 9.28 -34.44 -0.32 -17.84 16 8 H 0.06 1.49 7.60 -52.48 -0.40 1.10 16 9 C 0.26 7.08 4.74 -5.19 -0.02 7.06 16 10 N -0.72 -16.54 5.53 -66.42 -0.37 -16.90 16 11 C 0.72 16.04 8.57 -86.92 -0.74 15.29 16 12 O -0.60 -15.79 16.61 5.29 0.09 -15.71 16 13 N -0.65 -10.97 3.32 -175.28 -0.58 -11.55 16 14 C 0.15 2.07 6.85 -2.41 -0.02 2.05 16 15 C -0.17 -1.84 6.99 -89.22 -0.62 -2.46 16 16 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 17 C -0.14 -1.17 10.30 -24.50 -0.25 -1.42 16 18 C -0.18 -1.86 7.28 -87.22 -0.63 -2.50 16 19 H 0.12 1.15 8.14 -51.92 -0.42 0.72 16 20 C 0.13 1.66 6.72 -2.63 -0.02 1.64 16 21 H 0.27 8.53 7.22 -40.82 -0.29 8.23 16 22 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 23 H 0.01 0.44 8.01 -51.93 -0.42 0.03 16 24 H 0.39 7.80 6.72 -40.82 -0.27 7.53 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.09 1.30 7.88 -51.93 -0.41 0.89 16 27 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.01 6.88 -51.93 -0.36 0.66 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 257.68 15.07 3.88 3.88 Total: -1.00 -33.80 257.68 -7.93 -41.73 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -3.90 Total: 3.57 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -2.73 Total: 2.37 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.19 Total: -55.43 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.09 Total: -15.71 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.08 Total: 19.58 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -33.80 -7.93 -41.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885367948.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.341 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds