Wall clock time and date at job start Sun Mar 29 2020 21:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47006 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99731 * 179.97438 * 10 9 7 12 12 O 1.21587 * 120.00334 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99868 * 179.97438 * 11 10 9 14 14 C 1.48151 * 127.83779 * 180.02562 * 13 11 10 15 15 C 1.54388 * 104.62007 * 140.41326 * 14 13 11 16 16 H 1.08996 * 117.61546 * 244.77844 * 15 14 13 17 17 C 1.53003 * 118.12317 * 89.20187 * 15 14 13 18 18 C 1.54284 * 104.95988 * 23.86498 * 15 14 13 19 19 H 1.09008 * 121.81614 * 222.18129 * 18 15 14 20 20 C 1.48151 * 127.83940 * 359.67814 * 13 11 10 21 21 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46909 * 299.99046 * 9 7 2 23 23 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 24 24 H 0.96989 * 120.00004 * 359.97438 * 10 9 7 25 25 H 1.09005 * 110.40311 * 259.19361 * 14 13 11 26 26 H 1.08994 * 110.40852 * 21.50252 * 14 13 11 27 27 H 1.09000 * 117.44062 * 16.11309 * 17 15 14 28 28 H 1.09004 * 117.44224 * 160.80918 * 17 15 14 29 29 H 1.08998 * 110.40012 * 338.37094 * 20 13 11 30 30 H 1.09001 * 110.40339 * 100.80230 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5586 -5.1056 0.0020 13 7 2.6298 -5.9077 0.0005 14 6 2.3311 -7.3587 0.0004 15 6 3.3798 -7.9724 -0.9521 16 1 3.0187 -8.4348 -1.8707 17 6 4.7195 -8.4155 -0.3606 18 6 4.5525 -6.9698 -0.9525 19 1 5.0743 -6.6961 -1.8696 20 6 4.1097 -5.8381 -0.0072 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6242 -2.5567 0.8904 23 1 0.6248 -2.5571 -0.8896 24 1 3.1568 -3.4353 0.0002 25 1 2.4425 -7.7697 1.0039 26 1 1.3234 -7.5393 -0.3736 27 1 4.7773 -8.5303 0.7218 28 1 5.3156 -9.1208 -0.9397 29 1 4.4427 -4.8731 -0.3891 30 1 4.5033 -6.0077 0.9950 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885367948.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:51 Heat of formation + Delta-G solvation = -20.427554 kcal Electronic energy + Delta-G solvation = -13613.105034 eV Core-core repulsion = 11215.384687 eV Total energy + Delta-G solvation = -2397.720347 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.46178 -39.52347 -36.47476 -34.83894 -34.02157 -29.70431 -28.92123 -26.72601 -24.65084 -22.51806 -21.15348 -21.08927 -19.83381 -18.54340 -17.23444 -16.93224 -16.45593 -15.65895 -15.31077 -15.19593 -14.90127 -14.29744 -14.17730 -13.55279 -13.33425 -13.10933 -12.64565 -12.54016 -12.47408 -11.90544 -11.58090 -11.08317 -10.95989 -10.80068 -10.77077 -10.25551 -9.59917 -8.81669 -6.57055 1.53248 1.58697 1.65129 1.84578 2.02704 2.50500 2.55427 3.07148 3.12785 3.52432 3.61166 3.89630 4.10074 4.23970 4.44496 4.59854 4.66605 4.74195 4.87881 4.93400 5.02543 5.10830 5.15254 5.25932 5.40178 5.51077 6.03854 6.08789 6.31890 6.99188 7.26367 7.52543 8.57782 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.059455 B = 0.006502 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.833884 B = 4305.452068 C = 4691.442751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.031 4.031 3 Si 1.133 2.867 4 H -0.285 1.285 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.630 4.630 8 H 0.076 0.924 9 C 0.272 3.728 10 N -0.717 5.717 11 C 0.711 3.289 12 O -0.650 6.650 13 N -0.646 5.646 14 C 0.140 3.860 15 C -0.182 4.182 16 H 0.124 0.876 17 C -0.106 4.106 18 C -0.184 4.184 19 H 0.134 0.866 20 C 0.122 3.878 21 H 0.253 0.747 22 H -0.018 1.018 23 H -0.019 1.019 24 H 0.403 0.597 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.107 0.893 28 H 0.130 0.870 29 H 0.081 0.919 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.733 -14.504 -0.782 20.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.230 4.230 3 Si 0.951 3.049 4 H -0.211 1.211 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.667 4.667 8 H 0.094 0.906 9 C 0.148 3.852 10 N -0.371 5.371 11 C 0.413 3.587 12 O -0.533 6.533 13 N -0.384 5.384 14 C 0.018 3.982 15 C -0.201 4.201 16 H 0.142 0.858 17 C -0.143 4.143 18 C -0.204 4.204 19 H 0.151 0.849 20 C 0.000 4.000 21 H 0.062 0.938 22 H 0.000 1.000 23 H -0.001 1.001 24 H 0.239 0.761 25 H 0.103 0.897 26 H 0.081 0.919 27 H 0.126 0.874 28 H 0.148 0.852 29 H 0.099 0.901 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.574 -12.914 -0.771 18.751 hybrid contribution -0.288 -1.597 -0.119 1.627 sum 13.285 -14.511 -0.889 19.694 Atomic orbital electron populations 1.70899 1.08283 1.29901 1.47289 1.27718 0.96321 1.07147 0.91794 0.82764 0.73896 0.69782 0.78422 1.21060 1.18791 1.18745 1.22387 0.95528 0.91512 1.57287 0.90634 1.18579 0.88776 0.84550 0.93265 1.45145 1.10745 1.03374 1.77813 1.15766 0.84118 0.80958 0.77873 1.90822 1.16325 1.84690 1.61479 1.48459 1.06951 1.05376 1.77632 1.21765 0.98891 0.77720 0.99845 1.23669 0.89944 1.04273 1.02202 0.85765 1.23819 0.95146 0.93403 1.01929 1.24279 1.03837 0.89669 1.02575 0.84869 1.21915 0.77980 0.99561 1.00535 0.93764 1.00020 1.00131 0.76054 0.89741 0.91904 0.87427 0.85233 0.90106 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.66 13.65 21.45 0.29 -58.36 16 2 C -0.03 -1.80 5.46 84.65 0.46 -1.34 16 3 Si 1.13 48.42 29.90 68.60 2.05 50.47 16 4 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.63 -35.64 9.28 25.60 0.24 -35.41 16 8 H 0.08 3.91 7.60 -2.91 -0.02 3.89 16 9 C 0.27 15.66 4.74 85.63 0.41 16.06 16 10 N -0.72 -33.57 5.53 -482.30 -2.66 -36.23 16 11 C 0.71 32.72 8.57 179.06 1.53 34.25 16 12 O -0.65 -36.11 16.61 -3.99 -0.07 -36.17 16 13 N -0.65 -21.57 3.32 -826.72 -2.74 -24.32 16 14 C 0.14 3.74 6.85 86.53 0.59 4.34 16 15 C -0.18 -3.38 6.99 -9.89 -0.07 -3.45 16 16 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 17 C -0.11 -1.25 10.30 32.04 0.33 -0.92 16 18 C -0.18 -3.21 7.28 -8.59 -0.06 -3.27 16 19 H 0.13 2.04 8.14 -2.38 -0.02 2.02 16 20 C 0.12 2.81 6.72 86.39 0.58 3.39 16 21 H 0.25 16.69 7.22 -92.71 -0.67 16.02 16 22 H -0.02 -1.14 8.01 -2.39 -0.02 -1.16 16 23 H -0.02 -1.22 8.01 -2.39 -0.02 -1.24 16 24 H 0.40 16.06 6.72 -92.72 -0.62 15.43 16 25 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 26 H 0.06 1.95 7.88 -2.39 -0.02 1.93 16 27 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.08 1.86 6.88 -2.39 -0.02 1.84 16 30 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -76.55 257.68 1.50 -75.06 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.62 Total: 15.90 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 4.01 Total: 13.67 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -5.12 Total: -118.92 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.07 Total: -36.17 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.05 Total: 50.47 kcal Total: -76.55 1.50 -75.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885367948.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.631 kcal (2) G-P(sol) polarization free energy of solvation -76.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds