Wall clock time and date at job start Sun Mar 29 2020 21:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00221 * 2 1 4 4 H 1.48506 * 109.47297 * 90.00069 * 3 2 1 5 5 H 1.48503 * 109.47261 * 330.00250 * 3 2 1 6 6 H 1.48500 * 109.47454 * 210.00243 * 3 2 1 7 7 C 1.38949 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99709 * 359.97438 * 7 2 1 9 9 N 1.37101 * 120.00025 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99649 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00174 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99541 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.46924 * 180.02562 * 12 10 9 14 14 C 1.48559 * 111.00261 * 285.41980 * 13 12 10 15 15 C 1.54373 * 104.59919 * 200.96098 * 14 13 12 16 16 H 1.09006 * 118.15535 * 244.14910 * 15 14 13 17 17 C 1.52996 * 118.13092 * 87.22817 * 15 14 13 18 18 C 1.53008 * 60.54399 * 268.33343 * 17 15 14 19 19 H 1.09000 * 120.22661 * 248.54414 * 18 17 15 20 20 C 1.48561 * 111.00332 * 169.99936 * 13 12 10 21 21 H 0.97008 * 120.00016 * 359.97438 * 1 2 3 22 22 H 0.96993 * 120.00062 * 359.97438 * 9 7 2 23 23 H 1.08996 * 109.47057 * 299.99739 * 12 10 9 24 24 H 1.08999 * 109.47501 * 60.00398 * 12 10 9 25 25 H 1.09000 * 110.40942 * 319.74401 * 14 13 12 26 26 H 1.09008 * 110.41416 * 82.17532 * 14 13 12 27 27 H 1.08997 * 117.44557 * 160.68812 * 17 15 14 28 28 H 1.08999 * 117.44284 * 15.97600 * 17 15 14 29 29 H 1.09000 * 110.40900 * 277.82079 * 20 13 12 30 30 H 1.09002 * 110.40786 * 40.25691 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 1.4001 5 1 1.4456 2.6527 -0.7000 6 1 3.5457 1.4402 -0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5607 -2.3705 -0.0022 13 7 6.0504 -3.7555 -0.0026 14 6 5.8812 -4.3805 1.3345 15 6 6.8818 -5.5560 1.3440 16 1 6.4849 -6.5687 1.4151 17 6 8.3189 -5.2764 1.7883 18 6 7.9568 -5.1756 0.3051 19 1 8.3501 -5.9018 -0.4063 20 6 7.5154 -3.8023 -0.2446 21 1 -0.4850 0.8401 0.0004 22 1 3.8648 -0.3633 -0.0014 23 1 5.9233 -1.8571 -0.8927 24 1 5.9248 -1.8564 0.8872 25 1 6.1256 -3.6668 2.1213 26 1 4.8621 -4.7476 1.4564 27 1 8.9227 -6.1283 2.1012 28 1 8.5071 -4.3459 2.3238 29 1 7.7267 -3.7341 -1.3117 30 1 8.0156 -2.9981 0.2950 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886333535.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:50 Heat of formation + Delta-G solvation = 11.737997 kcal Electronic energy + Delta-G solvation = -13697.243941 eV Core-core repulsion = 11300.918397 eV Total energy + Delta-G solvation = -2396.325544 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.85434 -38.04604 -34.30070 -33.60472 -31.62255 -28.30302 -27.93376 -24.68388 -22.50144 -20.69675 -20.15327 -19.27563 -18.20009 -16.44887 -15.72276 -15.14635 -14.76690 -14.43661 -13.58713 -13.36174 -13.22522 -12.85530 -12.48081 -12.24229 -11.89655 -11.41227 -11.31344 -11.16385 -10.95113 -10.57684 -10.11846 -9.97815 -9.94910 -9.52695 -8.58037 -8.15331 -8.04080 -6.28221 -3.79396 3.04481 3.08245 3.16451 3.58281 3.78149 4.02007 4.12804 4.50773 4.67423 4.84404 5.05983 5.17821 5.22871 5.30757 5.52783 5.61836 5.63327 5.68838 5.75436 5.90108 5.98228 6.12102 6.16491 6.40917 7.03773 7.14696 7.61804 8.17665 8.63969 8.98683 9.45826 9.87780 10.85099 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.066664 B = 0.006885 C = 0.006538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.915720 B = 4065.691071 C = 4281.636612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.303 4.303 8 H 0.119 0.881 9 N -0.594 5.594 10 C 0.455 3.545 11 O -0.557 6.557 12 C 0.031 3.969 13 N -0.485 5.485 14 C 0.065 3.935 15 C -0.160 4.160 16 H 0.116 0.884 17 C -0.153 4.153 18 C -0.167 4.167 19 H 0.116 0.884 20 C 0.058 3.942 21 H 0.273 0.727 22 H 0.370 0.630 23 H 0.090 0.910 24 H 0.051 0.949 25 H 0.040 0.960 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.676 -3.611 2.221 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.234 5.234 10 C 0.240 3.760 11 O -0.438 6.438 12 C -0.101 4.101 13 N -0.209 5.209 14 C -0.062 4.062 15 C -0.179 4.179 16 H 0.134 0.866 17 C -0.190 4.190 18 C -0.185 4.185 19 H 0.134 0.866 20 C -0.070 4.070 21 H 0.083 0.917 22 H 0.202 0.798 23 H 0.109 0.891 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 15.716 -4.467 1.783 16.435 hybrid contribution 1.002 1.907 0.536 2.220 sum 16.718 -2.560 2.319 17.071 Atomic orbital electron populations 1.69622 1.05624 1.27421 1.49657 1.25024 0.95479 0.97919 0.97758 0.86678 0.79810 0.84115 0.78823 1.19697 1.20183 1.19505 1.19431 0.79236 0.96622 1.47920 0.86292 1.42208 1.07509 1.06098 1.67549 1.19607 0.87958 0.84553 0.83841 1.90552 1.69332 1.30874 1.53085 1.22093 0.95969 0.90295 1.01749 1.65284 1.11920 1.15628 1.28054 1.22684 1.00397 0.93898 0.89239 1.23466 0.89436 1.00294 1.04729 0.86563 1.23083 0.97193 1.02998 0.95754 1.23356 1.04574 0.98957 0.91662 0.86632 1.22671 0.88603 0.94508 1.01176 0.91662 0.79773 0.89140 0.93072 0.94231 0.88108 0.88201 0.89279 0.89694 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.08 13.96 55.50 0.77 -25.31 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.59 27.74 -169.99 -4.71 14.87 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 7 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 8 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 9 N -0.59 -14.45 5.09 -10.96 -0.06 -14.51 16 10 C 0.46 10.66 7.63 -10.98 -0.08 10.58 16 11 O -0.56 -15.35 14.80 5.55 0.08 -15.27 16 12 C 0.03 0.54 5.32 -4.97 -0.03 0.52 16 13 N -0.48 -8.28 4.98 -231.41 -1.15 -9.43 16 14 C 0.07 1.06 5.72 -2.19 -0.01 1.04 16 15 C -0.16 -2.08 7.12 -89.24 -0.64 -2.72 16 16 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 17 C -0.15 -1.58 10.07 -26.73 -0.27 -1.85 16 18 C -0.17 -1.96 7.13 -89.24 -0.64 -2.59 16 19 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 20 C 0.06 0.76 6.26 -2.19 -0.01 0.75 16 21 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.37 7.89 5.76 -40.82 -0.24 7.65 16 23 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 24 H 0.05 0.79 7.77 -51.93 -0.40 0.39 16 25 H 0.04 0.61 7.75 -51.93 -0.40 0.21 16 26 H 0.10 1.92 7.24 -51.92 -0.38 1.54 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.50 8.00 -51.93 -0.42 0.08 16 LS Contribution 253.21 15.07 3.82 3.82 Total: -1.00 -32.49 253.21 -7.10 -39.59 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -3.92 Total: 8.35 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.93 Total: -2.11 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.43 Total: -49.25 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.08 Total: -15.27 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.71 Total: 14.87 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.49 -7.10 -39.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886333535.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.328 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds