Wall clock time and date at job start Sun Mar 29 2020 21:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00221 * 2 1 4 4 H 1.48506 * 109.47297 * 90.00069 * 3 2 1 5 5 H 1.48503 * 109.47261 * 330.00250 * 3 2 1 6 6 H 1.48500 * 109.47454 * 210.00243 * 3 2 1 7 7 C 1.38949 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99709 * 359.97438 * 7 2 1 9 9 N 1.37101 * 120.00025 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99649 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00174 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99541 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.46924 * 180.02562 * 12 10 9 14 14 C 1.48559 * 111.00261 * 285.41980 * 13 12 10 15 15 C 1.54373 * 104.59919 * 200.96098 * 14 13 12 16 16 H 1.09006 * 118.15535 * 244.14910 * 15 14 13 17 17 C 1.52996 * 118.13092 * 87.22817 * 15 14 13 18 18 C 1.53008 * 60.54399 * 268.33343 * 17 15 14 19 19 H 1.09000 * 120.22661 * 248.54414 * 18 17 15 20 20 C 1.48561 * 111.00332 * 169.99936 * 13 12 10 21 21 H 0.97008 * 120.00016 * 359.97438 * 1 2 3 22 22 H 0.96993 * 120.00062 * 359.97438 * 9 7 2 23 23 H 1.08996 * 109.47057 * 299.99739 * 12 10 9 24 24 H 1.08999 * 109.47501 * 60.00398 * 12 10 9 25 25 H 1.09000 * 110.40942 * 319.74401 * 14 13 12 26 26 H 1.09008 * 110.41416 * 82.17532 * 14 13 12 27 27 H 1.08997 * 117.44557 * 160.68812 * 17 15 14 28 28 H 1.08999 * 117.44284 * 15.97600 * 17 15 14 29 29 H 1.09000 * 110.40900 * 277.82079 * 20 13 12 30 30 H 1.09002 * 110.40786 * 40.25691 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 1.4001 5 1 1.4456 2.6527 -0.7000 6 1 3.5457 1.4402 -0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5607 -2.3705 -0.0022 13 7 6.0504 -3.7555 -0.0026 14 6 5.8812 -4.3805 1.3345 15 6 6.8818 -5.5560 1.3440 16 1 6.4849 -6.5687 1.4151 17 6 8.3189 -5.2764 1.7883 18 6 7.9568 -5.1756 0.3051 19 1 8.3501 -5.9018 -0.4063 20 6 7.5154 -3.8023 -0.2446 21 1 -0.4850 0.8401 0.0004 22 1 3.8648 -0.3633 -0.0014 23 1 5.9233 -1.8571 -0.8927 24 1 5.9248 -1.8564 0.8872 25 1 6.1256 -3.6668 2.1213 26 1 4.8621 -4.7476 1.4564 27 1 8.9227 -6.1283 2.1012 28 1 8.5071 -4.3459 2.3238 29 1 7.7267 -3.7341 -1.3117 30 1 8.0156 -2.9981 0.2950 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886333535.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:50 Heat of formation + Delta-G solvation = -13.543963 kcal Electronic energy + Delta-G solvation = -13698.340249 eV Core-core repulsion = 11300.918397 eV Total energy + Delta-G solvation = -2397.421852 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.06346 -39.80044 -36.10035 -35.09186 -33.74489 -29.47508 -29.33103 -26.52653 -23.79417 -21.70533 -21.34123 -21.07781 -20.14639 -17.81395 -17.21285 -16.86417 -16.27999 -15.90029 -15.12408 -14.85141 -14.70909 -14.43002 -13.95531 -13.83195 -13.26451 -13.02254 -12.55799 -12.41963 -12.28855 -12.08870 -11.97858 -11.51172 -11.05225 -10.92743 -10.41936 -10.25359 -9.34405 -8.41950 -6.03072 1.29601 1.34947 1.44188 1.94781 2.22593 2.59094 2.73888 3.13914 3.25807 3.55499 3.75672 4.08306 4.13011 4.20106 4.33583 4.34844 4.44959 4.60017 4.65688 4.86748 4.94331 5.10861 5.20463 5.32285 5.52081 5.84033 5.89225 6.02131 6.59452 6.87595 7.38851 7.96764 8.75947 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.066664 B = 0.006885 C = 0.006538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.915720 B = 4065.691071 C = 4281.636612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.966 3.034 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.231 1.231 7 C -0.330 4.330 8 H 0.053 0.947 9 N -0.592 5.592 10 C 0.451 3.549 11 O -0.609 6.609 12 C 0.043 3.957 13 N -0.517 5.517 14 C 0.064 3.936 15 C -0.185 4.185 16 H 0.115 0.885 17 C -0.124 4.124 18 C -0.164 4.164 19 H 0.130 0.870 20 C 0.058 3.942 21 H 0.279 0.721 22 H 0.390 0.610 23 H 0.122 0.878 24 H 0.082 0.918 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.125 0.875 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.633 -1.819 2.281 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.213 4.213 3 Si 0.785 3.215 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.154 1.154 7 C -0.459 4.459 8 H 0.071 0.929 9 N -0.234 5.234 10 C 0.239 3.761 11 O -0.493 6.493 12 C -0.088 4.088 13 N -0.242 5.242 14 C -0.063 4.063 15 C -0.204 4.204 16 H 0.133 0.867 17 C -0.161 4.161 18 C -0.182 4.182 19 H 0.148 0.852 20 C -0.069 4.069 21 H 0.089 0.911 22 H 0.225 0.775 23 H 0.140 0.860 24 H 0.100 0.900 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.143 0.857 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.709 -2.686 1.841 19.976 hybrid contribution -0.308 1.203 0.517 1.345 sum 19.401 -1.483 2.358 19.600 Atomic orbital electron populations 1.69807 1.08173 1.29279 1.50333 1.26125 0.96479 1.02738 0.96006 0.85354 0.79509 0.76610 0.79977 1.18082 1.19886 1.15427 1.19002 0.81484 0.94926 1.50464 0.92866 1.42024 1.05812 1.07505 1.68086 1.20890 0.90778 0.83332 0.81133 1.90534 1.71309 1.32822 1.54610 1.22004 0.90602 0.91663 1.04558 1.65199 1.15055 1.15350 1.28585 1.22532 0.98968 0.95374 0.89439 1.23368 0.90171 0.99008 1.07822 0.86744 1.23190 0.94302 1.04200 0.94386 1.23508 1.03616 0.98465 0.92655 0.85227 1.22762 0.85873 0.95945 1.02287 0.91109 0.77476 0.86050 0.90040 0.93532 0.92752 0.85710 0.88512 0.88639 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.21 13.96 21.66 0.30 -56.91 16 2 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 3 Si 0.97 39.21 27.74 68.60 1.90 41.11 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.23 -7.89 6.52 99.48 0.65 -7.24 16 7 C -0.33 -19.79 10.16 84.04 0.85 -18.93 16 8 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 9 N -0.59 -28.80 5.09 -306.98 -1.56 -30.36 16 10 C 0.45 21.35 7.63 87.66 0.67 22.02 16 11 O -0.61 -35.43 14.80 -3.06 -0.05 -35.47 16 12 C 0.04 1.41 5.32 85.56 0.46 1.87 16 13 N -0.52 -16.92 4.98 -886.06 -4.41 -21.33 16 14 C 0.06 2.08 5.72 86.45 0.49 2.58 16 15 C -0.18 -4.54 7.12 -9.90 -0.07 -4.61 16 16 H 0.11 2.78 8.14 -2.38 -0.02 2.76 16 17 C -0.12 -2.08 10.07 30.60 0.31 -1.77 16 18 C -0.16 -3.32 7.13 -9.90 -0.07 -3.39 16 19 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 20 C 0.06 1.31 6.26 86.45 0.54 1.85 16 21 H 0.28 15.57 8.31 -92.70 -0.77 14.80 16 22 H 0.39 15.58 5.76 -92.71 -0.53 15.05 16 23 H 0.12 3.24 8.08 -2.39 -0.02 3.22 16 24 H 0.08 2.21 7.77 -2.39 -0.02 2.19 16 25 H 0.05 1.39 7.75 -2.39 -0.02 1.37 16 26 H 0.05 2.22 7.24 -2.38 -0.02 2.20 16 27 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.06 1.18 8.00 -2.39 -0.02 1.16 16 Total: -1.00 -77.03 253.21 0.38 -76.65 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.55 Total: 27.07 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 3.65 Total: -0.76 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -5.67 Total: -108.60 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -0.05 Total: -35.47 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 1.90 Total: 41.11 kcal Total: -77.03 0.38 -76.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886333535.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.108 kcal (2) G-P(sol) polarization free energy of solvation -77.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds