Wall clock time and date at job start Sun Mar 29 2020 21:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 O 1.45202 * 115.54608 * 334.33501 * 3 2 1 5 5 C 1.34225 * 116.99928 * 325.57563 * 4 3 2 6 6 O 1.20826 * 120.00349 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.99936 * 180.02562 * 5 4 3 8 8 C 1.52998 * 109.47147 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47286 * 180.02562 * 8 7 5 10 10 H 1.07998 * 119.99779 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00401 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99475 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00309 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47156 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47418 * 119.99837 * 13 11 9 16 16 H 1.48497 * 109.47354 * 240.00156 * 13 11 9 17 17 C 1.52999 * 117.50184 * 188.62186 * 3 2 1 18 18 C 1.52997 * 60.00047 * 252.51186 * 17 3 2 19 19 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 20 20 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 21 21 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.46811 * 299.99938 * 7 5 4 23 23 H 1.09001 * 109.46793 * 59.99975 * 7 5 4 24 24 H 1.09003 * 109.46924 * 299.99514 * 8 7 5 25 25 H 1.08995 * 109.47357 * 59.99436 * 8 7 5 26 26 H 0.97000 * 119.99859 * 180.02562 * 12 11 9 27 27 H 1.09002 * 117.49558 * 0.02562 * 17 3 2 28 28 H 1.09002 * 117.49552 * 145.02365 * 17 3 2 29 29 H 1.09004 * 117.50221 * 252.51290 * 18 17 3 30 30 H 1.08997 * 117.50259 * 107.49008 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 1.3540 2.4378 -0.5674 5 6 0.5327 2.1877 -1.5992 6 8 0.4103 1.0595 -2.0142 7 6 -0.2368 3.3139 -2.2400 8 6 -1.0916 2.7622 -3.3827 9 6 -1.8606 3.8885 -4.0239 10 1 -1.7509 4.8969 -3.6531 11 6 -2.7042 3.6316 -5.0838 12 7 -2.8373 2.4037 -5.5355 13 14 -3.6578 5.0276 -5.8781 14 1 -3.3346 6.3028 -5.1892 15 1 -3.2835 5.1302 -7.3115 16 1 -5.1140 4.7597 -5.7648 17 6 3.5788 1.2460 -0.2034 18 6 3.0044 1.5776 1.1753 19 1 -0.5401 0.9353 -0.0004 20 1 -0.5400 -0.9354 -0.0045 21 1 1.8500 -0.9353 -0.0004 22 1 -0.8825 3.7818 -1.4968 23 1 0.4611 4.0537 -2.6322 24 1 -0.4462 2.2941 -4.1260 25 1 -1.7894 2.0226 -2.9901 26 1 -3.4305 2.2230 -6.2814 27 1 4.0305 0.2632 -0.3377 28 1 4.0433 2.0576 -0.7635 29 1 3.0911 2.6072 1.5224 30 1 3.0784 0.8129 1.9485 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893358491.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:52 Heat of formation + Delta-G solvation = -34.755841 kcal Electronic energy + Delta-G solvation = -13612.975223 eV Core-core repulsion = 11182.340803 eV Total energy + Delta-G solvation = -2430.634419 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.37945 -37.37997 -34.87896 -33.60179 -32.19562 -31.02763 -26.14312 -23.23210 -22.66681 -22.10317 -20.25725 -18.89578 -17.13712 -16.32643 -16.10820 -15.55718 -14.65200 -14.45110 -14.16862 -13.22664 -12.93915 -12.46448 -12.30118 -12.06877 -11.67362 -11.25855 -11.16561 -10.97904 -10.66993 -10.56322 -10.21599 -10.05060 -9.72401 -9.59939 -9.16333 -8.41898 -8.37857 -6.01809 -4.06555 2.32714 2.93214 2.98247 3.30648 3.38035 3.41795 3.92565 4.42744 4.48508 4.84647 4.95669 5.17341 5.33770 5.38767 5.48894 5.74221 5.81304 5.98411 6.05018 6.12458 6.23258 6.66767 6.73406 6.92615 7.04733 7.66880 7.73871 7.98102 8.28148 8.46798 9.00853 9.57581 11.09265 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.066756 B = 0.006352 C = 0.006060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.339052 B = 4407.232837 C = 4619.352725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.154 4.154 3 C 0.070 3.930 4 O -0.332 6.332 5 C 0.447 3.553 6 O -0.485 6.485 7 C -0.103 4.103 8 C 0.034 3.966 9 C -0.528 4.528 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.890 5.890 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.178 4.178 18 C -0.147 4.147 19 H 0.090 0.910 20 H 0.102 0.898 21 H 0.120 0.880 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.261 0.739 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.661 -1.723 11.884 15.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.172 4.172 3 C 0.032 3.968 4 O -0.250 6.250 5 C 0.290 3.710 6 O -0.370 6.370 7 C -0.141 4.141 8 C -0.003 4.003 9 C -0.566 4.566 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.215 4.215 18 C -0.184 4.184 19 H 0.108 0.892 20 H 0.120 0.880 21 H 0.138 0.862 22 H 0.108 0.892 23 H 0.109 0.891 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.542 -2.194 11.630 15.202 hybrid contribution -0.546 0.590 -0.632 1.022 sum 8.996 -1.604 10.998 14.299 Atomic orbital electron populations 1.23673 0.95745 1.01808 0.95641 1.22019 0.95722 0.94570 1.04895 1.21044 0.88418 0.86085 1.01210 1.86556 1.55152 1.36492 1.46830 1.24673 0.77165 0.92007 0.77145 1.90716 1.62168 1.23848 1.60314 1.21783 0.98194 0.94236 0.99853 1.19007 0.93963 0.96498 0.90815 1.21198 1.25449 0.94115 1.15831 0.92298 1.25020 0.96829 0.95615 0.96863 1.70006 1.37681 1.18998 1.26121 0.86489 0.79719 0.82293 0.79210 1.19652 1.20956 1.20956 1.23475 0.94821 1.03862 0.99383 1.23277 0.99921 1.03665 0.91567 0.89179 0.87959 0.86240 0.89201 0.89108 0.95592 0.95576 0.92912 0.87813 0.87828 0.87615 0.87463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 11.59 29.02 0.34 -1.80 16 2 C -0.15 -2.32 8.40 -36.02 -0.30 -2.63 16 3 C 0.07 1.05 2.83 -91.77 -0.26 0.79 16 4 O -0.33 -5.90 10.30 -39.24 -0.40 -6.31 16 5 C 0.45 9.07 6.32 36.01 0.23 9.30 16 6 O -0.49 -11.00 11.94 -18.75 -0.22 -11.22 16 7 C -0.10 -2.16 5.75 -27.88 -0.16 -2.32 16 8 C 0.03 0.91 4.26 -27.88 -0.12 0.79 16 9 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 10 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 13 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C -0.18 -2.12 10.19 -26.73 -0.27 -2.39 16 18 C -0.15 -1.60 10.19 -26.73 -0.27 -1.88 16 19 H 0.09 1.61 6.29 -52.49 -0.33 1.28 16 20 H 0.10 1.47 8.06 -52.48 -0.42 1.05 16 21 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 22 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 23 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 24 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 25 H 0.03 0.75 8.10 -51.93 -0.42 0.32 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 264.00 15.07 3.98 3.98 Total: -1.00 -31.92 264.00 -6.26 -38.19 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.09 Total: -1.03 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -1.23 Total: -13.72 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.74 Total: -26.40 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.63 Total: -17.53 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.92 -6.26 -38.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893358491.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.431 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds