Wall clock time and date at job start Sun Mar 29 2020 21:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 O 1.45202 * 115.54608 * 334.33501 * 3 2 1 5 5 C 1.34225 * 116.99928 * 325.57563 * 4 3 2 6 6 O 1.20826 * 120.00349 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.99936 * 180.02562 * 5 4 3 8 8 C 1.52998 * 109.47147 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47286 * 180.02562 * 8 7 5 10 10 H 1.07998 * 119.99779 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00401 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99475 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00309 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47156 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47418 * 119.99837 * 13 11 9 16 16 H 1.48497 * 109.47354 * 240.00156 * 13 11 9 17 17 C 1.52999 * 117.50184 * 188.62186 * 3 2 1 18 18 C 1.52997 * 60.00047 * 252.51186 * 17 3 2 19 19 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 20 20 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 21 21 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.46811 * 299.99938 * 7 5 4 23 23 H 1.09001 * 109.46793 * 59.99975 * 7 5 4 24 24 H 1.09003 * 109.46924 * 299.99514 * 8 7 5 25 25 H 1.08995 * 109.47357 * 59.99436 * 8 7 5 26 26 H 0.97000 * 119.99859 * 180.02562 * 12 11 9 27 27 H 1.09002 * 117.49558 * 0.02562 * 17 3 2 28 28 H 1.09002 * 117.49552 * 145.02365 * 17 3 2 29 29 H 1.09004 * 117.50221 * 252.51290 * 18 17 3 30 30 H 1.08997 * 117.50259 * 107.49008 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 1.3540 2.4378 -0.5674 5 6 0.5327 2.1877 -1.5992 6 8 0.4103 1.0595 -2.0142 7 6 -0.2368 3.3139 -2.2400 8 6 -1.0916 2.7622 -3.3827 9 6 -1.8606 3.8885 -4.0239 10 1 -1.7509 4.8969 -3.6531 11 6 -2.7042 3.6316 -5.0838 12 7 -2.8373 2.4037 -5.5355 13 14 -3.6578 5.0276 -5.8781 14 1 -3.3346 6.3028 -5.1892 15 1 -3.2835 5.1302 -7.3115 16 1 -5.1140 4.7597 -5.7648 17 6 3.5788 1.2460 -0.2034 18 6 3.0044 1.5776 1.1753 19 1 -0.5401 0.9353 -0.0004 20 1 -0.5400 -0.9354 -0.0045 21 1 1.8500 -0.9353 -0.0004 22 1 -0.8825 3.7818 -1.4968 23 1 0.4611 4.0537 -2.6322 24 1 -0.4462 2.2941 -4.1260 25 1 -1.7894 2.0226 -2.9901 26 1 -3.4305 2.2230 -6.2814 27 1 4.0305 0.2632 -0.3377 28 1 4.0433 2.0576 -0.7635 29 1 3.0911 2.6072 1.5224 30 1 3.0784 0.8129 1.9485 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893358491.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:52 Heat of formation + Delta-G solvation = -53.614972 kcal Electronic energy + Delta-G solvation = -13613.793016 eV Core-core repulsion = 11182.340803 eV Total energy + Delta-G solvation = -2431.452212 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.81903 -38.69331 -36.21993 -35.67050 -33.45942 -32.95167 -28.14806 -24.85456 -23.71464 -23.38507 -21.90506 -20.30986 -18.93058 -18.02089 -17.37590 -17.21029 -16.49687 -15.80593 -15.51162 -14.73226 -14.46154 -14.27212 -13.77030 -13.51837 -13.24221 -12.88164 -12.52600 -12.49290 -12.34707 -12.04048 -11.82982 -11.70070 -11.56026 -11.29194 -10.91509 -10.60049 -9.66466 -8.21553 -6.35465 1.06618 1.42086 1.43445 1.45786 1.56623 1.64330 2.41921 2.91859 3.12325 3.36125 3.76001 3.89698 4.03853 4.24144 4.35670 4.41341 4.60907 4.66868 4.80019 4.90092 4.97933 5.15004 5.42416 5.46552 5.53628 5.57690 5.76954 5.79309 6.12139 6.80637 6.91108 7.34930 8.91363 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.066756 B = 0.006352 C = 0.006060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.339052 B = 4407.232837 C = 4619.352725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.143 4.143 3 C 0.015 3.985 4 O -0.329 6.329 5 C 0.453 3.547 6 O -0.517 6.517 7 C -0.095 4.095 8 C 0.043 3.957 9 C -0.545 4.545 10 H 0.075 0.925 11 C -0.003 4.003 12 N -0.936 5.936 13 Si 0.975 3.025 14 H -0.254 1.254 15 H -0.279 1.279 16 H -0.279 1.279 17 C -0.168 4.168 18 C -0.115 4.115 19 H 0.065 0.935 20 H 0.111 0.889 21 H 0.145 0.855 22 H 0.109 0.891 23 H 0.111 0.889 24 H -0.011 1.011 25 H -0.010 1.010 26 H 0.264 0.736 27 H 0.123 0.877 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.880 -0.414 12.958 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C -0.022 4.022 4 O -0.247 6.247 5 C 0.298 3.702 6 O -0.405 6.405 7 C -0.132 4.132 8 C 0.005 3.995 9 C -0.582 4.582 10 H 0.094 0.906 11 C -0.201 4.201 12 N -0.575 5.575 13 Si 0.799 3.201 14 H -0.178 1.178 15 H -0.205 1.205 16 H -0.205 1.205 17 C -0.205 4.205 18 C -0.151 4.151 19 H 0.083 0.917 20 H 0.130 0.870 21 H 0.162 0.838 22 H 0.127 0.873 23 H 0.129 0.871 24 H 0.008 0.992 25 H 0.009 0.991 26 H 0.073 0.927 27 H 0.141 0.859 28 H 0.123 0.877 29 H 0.135 0.865 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.785 -0.863 12.738 16.713 hybrid contribution -0.822 0.130 -0.898 1.224 sum 9.963 -0.734 11.840 15.492 Atomic orbital electron populations 1.23640 0.96576 1.01161 0.98455 1.22353 0.95457 0.95861 1.02403 1.21665 0.89817 0.85406 1.05324 1.86478 1.54673 1.37974 1.45553 1.24327 0.77350 0.91064 0.77489 1.90702 1.63368 1.24888 1.61499 1.21518 0.98417 0.94694 0.98613 1.18754 0.93396 0.95526 0.91786 1.21668 1.25485 0.95042 1.16044 0.90643 1.26095 0.97988 0.98460 0.97571 1.70166 1.38757 1.21722 1.26903 0.85255 0.77820 0.79037 0.78036 1.17778 1.20505 1.20518 1.23635 0.91708 1.05110 1.00060 1.23485 0.95239 1.05252 0.91135 0.91662 0.87041 0.83754 0.87265 0.87072 0.99220 0.99118 0.92717 0.85893 0.87706 0.86507 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.36 11.59 67.79 0.79 -4.57 16 2 C -0.14 -4.18 8.40 25.65 0.22 -3.96 16 3 C 0.01 0.41 2.83 -11.54 -0.03 0.38 16 4 O -0.33 -11.44 10.30 -51.37 -0.53 -11.97 16 5 C 0.45 18.65 6.32 71.24 0.45 19.10 16 6 O -0.52 -24.23 11.94 21.97 0.26 -23.96 16 7 C -0.10 -4.00 5.75 29.85 0.17 -3.83 16 8 C 0.04 2.35 4.26 29.85 0.13 2.48 16 9 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 10 H 0.08 3.94 7.74 -2.91 -0.02 3.91 16 11 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 12 N -0.94 -58.63 13.29 21.45 0.28 -58.35 16 13 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 14 H -0.25 -10.68 7.11 99.48 0.71 -9.98 16 15 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 17 C -0.17 -3.48 10.19 30.59 0.31 -3.17 16 18 C -0.11 -2.07 10.19 30.59 0.31 -1.76 16 19 H 0.06 2.45 6.29 -2.91 -0.02 2.43 16 20 H 0.11 3.33 8.06 -2.91 -0.02 3.30 16 21 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 22 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 23 H 0.11 4.20 8.14 -2.39 -0.02 4.19 16 24 H -0.01 -0.66 8.10 -2.39 -0.02 -0.67 16 25 H -0.01 -0.59 8.10 -2.39 -0.02 -0.61 16 26 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 27 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.12 1.89 8.14 -2.38 -0.02 1.88 16 30 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -70.90 264.00 6.19 -64.71 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 1.11 Total: 9.17 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 3.04 Total: -25.71 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.28 Total: -58.35 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.27 Total: -35.93 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -70.90 6.19 -64.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893358491.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.097 kcal (2) G-P(sol) polarization free energy of solvation -70.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds