Wall clock time and date at job start Sun Mar 29 2020 21:29:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30994 * 1
3 3 C 1.50702 * 120.00204 * 2 1
4 4 O 1.45202 * 115.54608 * 334.33501 * 3 2 1
5 5 C 1.34225 * 116.99928 * 325.57563 * 4 3 2
6 6 O 1.20826 * 120.00349 * 0.02562 * 5 4 3
7 7 C 1.50708 * 119.99936 * 180.02562 * 5 4 3
8 8 C 1.52998 * 109.47147 * 180.02562 * 7 5 4
9 9 C 1.50699 * 109.47286 * 180.02562 * 8 7 5
10 10 H 1.07998 * 119.99779 * 359.97438 * 9 8 7
11 11 C 1.37878 * 120.00401 * 179.97438 * 9 8 7
12 12 N 1.31514 * 119.99475 * 359.97438 * 11 9 8
13 13 Si 1.86795 * 120.00309 * 179.97438 * 11 9 8
14 14 H 1.48501 * 109.47156 * 359.97438 * 13 11 9
15 15 H 1.48500 * 109.47418 * 119.99837 * 13 11 9
16 16 H 1.48497 * 109.47354 * 240.00156 * 13 11 9
17 17 C 1.52999 * 117.50184 * 188.62186 * 3 2 1
18 18 C 1.52997 * 60.00047 * 252.51186 * 17 3 2
19 19 H 1.08002 * 120.00352 * 0.02562 * 1 2 3
20 20 H 1.08005 * 119.99880 * 179.72197 * 1 2 3
21 21 H 1.08002 * 120.00350 * 180.02562 * 2 1 3
22 22 H 1.09003 * 109.46811 * 299.99938 * 7 5 4
23 23 H 1.09001 * 109.46793 * 59.99975 * 7 5 4
24 24 H 1.09003 * 109.46924 * 299.99514 * 8 7 5
25 25 H 1.08995 * 109.47357 * 59.99436 * 8 7 5
26 26 H 0.97000 * 119.99859 * 180.02562 * 12 11 9
27 27 H 1.09002 * 117.49558 * 0.02562 * 17 3 2
28 28 H 1.09002 * 117.49552 * 145.02365 * 17 3 2
29 29 H 1.09004 * 117.50221 * 252.51290 * 18 17 3
30 30 H 1.08997 * 117.50259 * 107.49008 * 18 17 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3099 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 8 1.3540 2.4378 -0.5674
5 6 0.5327 2.1877 -1.5992
6 8 0.4103 1.0595 -2.0142
7 6 -0.2368 3.3139 -2.2400
8 6 -1.0916 2.7622 -3.3827
9 6 -1.8606 3.8885 -4.0239
10 1 -1.7509 4.8969 -3.6531
11 6 -2.7042 3.6316 -5.0838
12 7 -2.8373 2.4037 -5.5355
13 14 -3.6578 5.0276 -5.8781
14 1 -3.3346 6.3028 -5.1892
15 1 -3.2835 5.1302 -7.3115
16 1 -5.1140 4.7597 -5.7648
17 6 3.5788 1.2460 -0.2034
18 6 3.0044 1.5776 1.1753
19 1 -0.5401 0.9353 -0.0004
20 1 -0.5400 -0.9354 -0.0045
21 1 1.8500 -0.9353 -0.0004
22 1 -0.8825 3.7818 -1.4968
23 1 0.4611 4.0537 -2.6322
24 1 -0.4462 2.2941 -4.1260
25 1 -1.7894 2.0226 -2.9901
26 1 -3.4305 2.2230 -6.2814
27 1 4.0305 0.2632 -0.3377
28 1 4.0433 2.0576 -0.7635
29 1 3.0911 2.6072 1.5224
30 1 3.0784 0.8129 1.9485
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000893358491.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:29:52
Heat of formation + Delta-G solvation = -53.614972 kcal
Electronic energy + Delta-G solvation = -13613.793016 eV
Core-core repulsion = 11182.340803 eV
Total energy + Delta-G solvation = -2431.452212 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 210.104 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-41.81903 -38.69331 -36.21993 -35.67050 -33.45942 -32.95167 -28.14806 -24.85456
-23.71464 -23.38507 -21.90506 -20.30986 -18.93058 -18.02089 -17.37590 -17.21029
-16.49687 -15.80593 -15.51162 -14.73226 -14.46154 -14.27212 -13.77030 -13.51837
-13.24221 -12.88164 -12.52600 -12.49290 -12.34707 -12.04048 -11.82982 -11.70070
-11.56026 -11.29194 -10.91509 -10.60049 -9.66466 -8.21553 -6.35465 1.06618
1.42086 1.43445 1.45786 1.56623 1.64330 2.41921 2.91859 3.12325
3.36125 3.76001 3.89698 4.03853 4.24144 4.35670 4.41341 4.60907
4.66868 4.80019 4.90092 4.97933 5.15004 5.42416 5.46552 5.53628
5.57690 5.76954 5.79309 6.12139 6.80637 6.91108 7.34930 8.91363
Molecular weight = 210.10amu
Principal moments of inertia in cm(-1)
A = 0.066756 B = 0.006352 C = 0.006060
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 419.339052 B = 4407.232837 C = 4619.352725
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C -0.143 4.143
3 C 0.015 3.985
4 O -0.329 6.329
5 C 0.453 3.547
6 O -0.517 6.517
7 C -0.095 4.095
8 C 0.043 3.957
9 C -0.545 4.545
10 H 0.075 0.925
11 C -0.003 4.003
12 N -0.936 5.936
13 Si 0.975 3.025
14 H -0.254 1.254
15 H -0.279 1.279
16 H -0.279 1.279
17 C -0.168 4.168
18 C -0.115 4.115
19 H 0.065 0.935
20 H 0.111 0.889
21 H 0.145 0.855
22 H 0.109 0.891
23 H 0.111 0.889
24 H -0.011 1.011
25 H -0.010 1.010
26 H 0.264 0.736
27 H 0.123 0.877
28 H 0.105 0.895
29 H 0.117 0.883
30 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.880 -0.414 12.958 16.925
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.161 4.161
3 C -0.022 4.022
4 O -0.247 6.247
5 C 0.298 3.702
6 O -0.405 6.405
7 C -0.132 4.132
8 C 0.005 3.995
9 C -0.582 4.582
10 H 0.094 0.906
11 C -0.201 4.201
12 N -0.575 5.575
13 Si 0.799 3.201
14 H -0.178 1.178
15 H -0.205 1.205
16 H -0.205 1.205
17 C -0.205 4.205
18 C -0.151 4.151
19 H 0.083 0.917
20 H 0.130 0.870
21 H 0.162 0.838
22 H 0.127 0.873
23 H 0.129 0.871
24 H 0.008 0.992
25 H 0.009 0.991
26 H 0.073 0.927
27 H 0.141 0.859
28 H 0.123 0.877
29 H 0.135 0.865
30 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges 10.785 -0.863 12.738 16.713
hybrid contribution -0.822 0.130 -0.898 1.224
sum 9.963 -0.734 11.840 15.492
Atomic orbital electron populations
1.23640 0.96576 1.01161 0.98455 1.22353 0.95457 0.95861 1.02403
1.21665 0.89817 0.85406 1.05324 1.86478 1.54673 1.37974 1.45553
1.24327 0.77350 0.91064 0.77489 1.90702 1.63368 1.24888 1.61499
1.21518 0.98417 0.94694 0.98613 1.18754 0.93396 0.95526 0.91786
1.21668 1.25485 0.95042 1.16044 0.90643 1.26095 0.97988 0.98460
0.97571 1.70166 1.38757 1.21722 1.26903 0.85255 0.77820 0.79037
0.78036 1.17778 1.20505 1.20518 1.23635 0.91708 1.05110 1.00060
1.23485 0.95239 1.05252 0.91135 0.91662 0.87041 0.83754 0.87265
0.87072 0.99220 0.99118 0.92717 0.85893 0.87706 0.86507 0.84747
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.36 11.59 67.79 0.79 -4.57 16
2 C -0.14 -4.18 8.40 25.65 0.22 -3.96 16
3 C 0.01 0.41 2.83 -11.54 -0.03 0.38 16
4 O -0.33 -11.44 10.30 -51.37 -0.53 -11.97 16
5 C 0.45 18.65 6.32 71.24 0.45 19.10 16
6 O -0.52 -24.23 11.94 21.97 0.26 -23.96 16
7 C -0.10 -4.00 5.75 29.85 0.17 -3.83 16
8 C 0.04 2.35 4.26 29.85 0.13 2.48 16
9 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16
10 H 0.08 3.94 7.74 -2.91 -0.02 3.91 16
11 C 0.00 -0.19 5.46 84.65 0.46 0.27 16
12 N -0.94 -58.63 13.29 21.45 0.28 -58.35 16
13 Si 0.97 44.09 29.54 68.60 2.03 46.12 16
14 H -0.25 -10.68 7.11 99.48 0.71 -9.98 16
15 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16
16 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16
17 C -0.17 -3.48 10.19 30.59 0.31 -3.17 16
18 C -0.11 -2.07 10.19 30.59 0.31 -1.76 16
19 H 0.06 2.45 6.29 -2.91 -0.02 2.43 16
20 H 0.11 3.33 8.06 -2.91 -0.02 3.30 16
21 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16
22 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16
23 H 0.11 4.20 8.14 -2.39 -0.02 4.19 16
24 H -0.01 -0.66 8.10 -2.39 -0.02 -0.67 16
25 H -0.01 -0.59 8.10 -2.39 -0.02 -0.61 16
26 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16
27 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16
28 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16
29 H 0.12 1.89 8.14 -2.38 -0.02 1.88 16
30 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16
Total: -1.00 -70.90 264.00 6.19 -64.71
By element:
Atomic # 1 Polarization: 8.06 SS G_CDS: 1.11 Total: 9.17 kcal
Atomic # 6 Polarization: -28.75 SS G_CDS: 3.04 Total: -25.71 kcal
Atomic # 7 Polarization: -58.63 SS G_CDS: 0.28 Total: -58.35 kcal
Atomic # 8 Polarization: -35.66 SS G_CDS: -0.27 Total: -35.93 kcal
Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal
Total: -70.90 6.19 -64.71 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000893358491.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.097 kcal
(2) G-P(sol) polarization free energy of solvation -70.900 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.804 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.189 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.712 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.615 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds