Wall clock time and date at job start Sun Mar 29 2020 21:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50705 * 120.00273 * 2 1 4 4 O 1.45198 * 115.54681 * 25.59197 * 3 2 1 5 5 C 1.34227 * 117.00396 * 34.32623 * 4 3 2 6 6 O 1.20827 * 119.99768 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.00163 * 180.02562 * 5 4 3 8 8 H 1.09006 * 109.46669 * 59.99773 * 7 5 4 9 9 C 1.52999 * 109.46912 * 299.99931 * 7 5 4 10 10 C 1.50698 * 109.47103 * 179.97438 * 7 5 4 11 11 H 1.07996 * 119.99712 * 35.10736 * 10 7 5 12 12 C 1.37877 * 120.00069 * 215.10222 * 10 7 5 13 13 N 1.31510 * 119.99717 * 184.91477 * 12 10 7 14 14 Si 1.86800 * 119.99858 * 4.91203 * 12 10 7 15 15 H 1.48504 * 109.46881 * 84.82766 * 14 12 10 16 16 H 1.48498 * 109.46862 * 204.82300 * 14 12 10 17 17 H 1.48499 * 109.47137 * 324.82632 * 14 12 10 18 18 C 1.53006 * 117.51673 * 171.28659 * 3 2 1 19 19 C 1.53000 * 117.49942 * 239.91512 * 3 2 1 20 20 H 1.08003 * 119.99858 * 359.97438 * 1 2 3 21 21 H 1.07999 * 120.00360 * 180.02562 * 1 2 3 22 22 H 1.08003 * 119.99858 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.46671 * 175.05621 * 9 7 5 24 24 H 1.09000 * 109.47090 * 295.05971 * 9 7 5 25 25 H 1.09005 * 109.47225 * 55.06324 * 9 7 5 26 26 H 0.97009 * 119.99631 * 179.97438 * 13 12 10 27 27 H 1.09004 * 117.49602 * 214.97397 * 18 3 2 28 28 H 1.08998 * 117.49700 * 359.97438 * 18 3 2 29 29 H 1.08998 * 117.49901 * 359.97438 * 19 3 2 30 30 H 1.09002 * 117.49361 * 144.99785 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 1.3535 2.4382 0.5659 5 6 0.5294 2.1885 1.5956 6 8 0.4059 1.0605 2.0107 7 6 -0.2417 3.3150 2.2340 8 1 -0.8854 3.7826 1.4889 9 6 0.7365 4.3535 2.7867 10 6 -1.0866 2.7720 3.3575 11 1 -0.7207 1.9555 3.9622 12 6 -2.3266 3.3178 3.6134 13 7 -3.0226 2.9104 4.6522 14 14 -3.0180 4.6358 2.4845 15 1 -3.6930 3.9930 1.3284 16 1 -3.9981 5.4636 3.2323 17 1 -1.9125 5.4983 1.9954 18 6 3.5786 1.2466 0.2056 19 6 3.0059 1.5767 -1.1743 20 1 -0.5400 0.9353 0.0004 21 1 -0.5401 -0.9353 0.0004 22 1 1.8499 -0.9353 -0.0004 23 1 0.1801 5.2090 3.1697 24 1 1.3206 3.9096 3.5928 25 1 1.4057 4.6820 1.9914 26 1 -3.8949 3.2946 4.8324 27 1 4.0422 2.0587 0.7656 28 1 4.0304 0.2640 0.3413 29 1 3.0812 0.8113 -1.9466 30 1 3.0928 2.6061 -1.5221 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893358611.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:15 Heat of formation + Delta-G solvation = -46.859145 kcal Electronic energy + Delta-G solvation = -14128.014816 eV Core-core repulsion = 11696.855559 eV Total energy + Delta-G solvation = -2431.159258 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.69556 -38.59115 -36.10455 -35.76882 -33.50003 -33.12840 -27.33225 -25.62200 -23.72040 -23.41924 -21.97578 -20.07442 -19.26213 -18.04196 -17.44642 -16.97001 -16.30659 -15.66591 -15.41588 -14.65772 -14.39459 -14.26568 -13.71884 -13.53656 -13.22091 -12.99423 -12.68013 -12.47311 -12.29650 -12.22124 -11.81202 -11.65553 -11.39859 -11.30187 -10.83020 -10.76564 -9.58140 -8.34473 -6.43017 1.15522 1.33831 1.35134 1.46234 1.62056 1.77565 2.30017 2.94465 3.03275 3.42266 3.84557 3.97403 4.10409 4.28474 4.31895 4.56549 4.65995 4.68638 4.79116 4.89572 4.92063 5.08266 5.17614 5.39692 5.45940 5.51085 5.67238 5.82166 6.19758 6.65595 7.11178 7.22167 8.82332 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.044473 B = 0.009678 C = 0.009149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.439534 B = 2892.372875 C = 3059.551850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.143 4.143 3 C 0.012 3.988 4 O -0.332 6.332 5 C 0.458 3.542 6 O -0.513 6.513 7 C 0.018 3.982 8 H 0.074 0.926 9 C -0.127 4.127 10 C -0.513 4.513 11 H 0.031 0.969 12 C 0.016 3.984 13 N -0.941 5.941 14 Si 0.939 3.061 15 H -0.267 1.267 16 H -0.278 1.278 17 H -0.229 1.229 18 C -0.168 4.168 19 C -0.114 4.114 20 H 0.061 0.939 21 H 0.111 0.889 22 H 0.145 0.855 23 H 0.064 0.936 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.271 0.729 27 H 0.104 0.896 28 H 0.122 0.878 29 H 0.134 0.866 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.083 0.652 -13.153 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C -0.025 4.025 4 O -0.250 6.250 5 C 0.301 3.699 6 O -0.400 6.400 7 C -0.002 4.002 8 H 0.091 0.909 9 C -0.185 4.185 10 C -0.550 4.550 11 H 0.049 0.951 12 C -0.182 4.182 13 N -0.580 5.580 14 Si 0.760 3.240 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.152 1.152 18 C -0.205 4.205 19 C -0.151 4.151 20 H 0.080 0.920 21 H 0.129 0.871 22 H 0.163 0.837 23 H 0.083 0.917 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.140 0.860 29 H 0.152 0.848 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.907 0.316 -12.931 16.920 hybrid contribution -0.945 0.042 0.380 1.020 sum 9.962 0.358 -12.551 16.028 Atomic orbital electron populations 1.23612 0.96667 1.00975 0.98528 1.22345 0.95362 0.95943 1.02389 1.21662 0.89860 0.85657 1.05341 1.86499 1.54723 1.37764 1.46022 1.24650 0.76873 0.91396 0.76947 1.90609 1.63139 1.24925 1.61330 1.19157 0.94610 0.91197 0.95203 0.90865 1.21817 0.98268 0.97845 1.00557 1.20770 1.01997 1.18397 1.13864 0.95059 1.25955 0.96376 0.99176 0.96672 1.70035 1.13667 1.45029 1.29259 0.85871 0.79625 0.79501 0.78977 1.19251 1.20355 1.15170 1.23610 0.91834 1.04988 1.00048 1.23464 0.95364 1.05167 0.91089 0.92005 0.87091 0.83745 0.91725 0.93830 0.91170 0.92035 0.87770 0.85972 0.84794 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.91 11.59 67.79 0.79 -5.13 16 2 C -0.14 -4.59 8.41 25.65 0.22 -4.38 16 3 C 0.01 0.37 2.83 -11.54 -0.03 0.33 16 4 O -0.33 -12.87 10.11 -51.39 -0.52 -13.39 16 5 C 0.46 21.28 5.61 71.24 0.40 21.68 16 6 O -0.51 -26.72 11.72 21.96 0.26 -26.46 16 7 C 0.02 0.86 2.40 -12.29 -0.03 0.83 16 8 H 0.07 3.32 5.29 -2.38 -0.01 3.31 16 9 C -0.13 -5.12 9.14 71.98 0.66 -4.47 16 10 C -0.51 -30.26 8.36 25.60 0.21 -30.04 16 11 H 0.03 2.14 7.61 -2.91 -0.02 2.12 16 12 C 0.02 0.95 5.47 84.66 0.46 1.42 16 13 N -0.94 -59.18 13.96 21.45 0.30 -58.88 16 14 Si 0.94 42.42 26.99 68.60 1.85 44.27 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.23 -9.10 6.82 99.48 0.68 -8.42 16 18 C -0.17 -3.85 10.19 30.60 0.31 -3.54 16 19 C -0.11 -2.31 10.19 30.60 0.31 -2.00 16 20 H 0.06 2.60 6.28 -2.91 -0.02 2.58 16 21 H 0.11 3.65 8.06 -2.91 -0.02 3.63 16 22 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 23 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.07 2.35 8.00 -2.38 -0.02 2.33 16 26 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 27 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 28 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -71.50 258.44 6.27 -65.23 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 1.09 Total: 14.53 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 3.30 Total: -25.30 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.30 Total: -58.88 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -0.26 Total: -39.85 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.85 Total: 44.27 kcal Total: -71.50 6.27 -65.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893358611.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.367 kcal (2) G-P(sol) polarization free energy of solvation -71.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds