Wall clock time and date at job start Sun Mar 29 2020 21:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47128 * 2 1 4 4 C 1.36936 * 120.00164 * 96.71475 * 3 2 1 5 5 H 1.08003 * 120.00073 * 159.63496 * 4 3 2 6 6 C 1.38806 * 119.99832 * 339.63106 * 4 3 2 7 7 N 1.31621 * 120.00064 * 357.14451 * 6 4 3 8 8 Si 1.86804 * 119.99982 * 177.14577 * 6 4 3 9 9 H 1.48497 * 109.46910 * 59.99924 * 8 6 4 10 10 H 1.48497 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46999 * 300.00032 * 8 6 4 12 12 C 1.46504 * 119.99650 * 276.71136 * 3 2 1 13 13 C 1.50692 * 109.47365 * 273.37714 * 12 3 2 14 14 O 1.34758 * 126.44253 * 277.03518 * 13 12 3 15 15 C 1.33973 * 107.75375 * 180.02562 * 14 13 12 16 16 N 1.30250 * 108.76163 * 0.02562 * 15 14 13 17 17 C 1.34334 * 126.44605 * 97.06360 * 13 12 3 18 18 C 1.50702 * 126.16150 * 359.97438 * 17 13 12 19 19 H 1.08995 * 109.47219 * 69.28469 * 1 2 3 20 20 H 1.09003 * 109.47027 * 189.28371 * 1 2 3 21 21 H 1.08998 * 109.46829 * 309.28371 * 1 2 3 22 22 H 1.09004 * 109.46887 * 239.99903 * 2 1 3 23 23 H 1.09001 * 109.47122 * 120.00151 * 2 1 3 24 24 H 0.97000 * 119.99741 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.46812 * 153.37573 * 12 3 2 26 26 H 1.08999 * 109.47026 * 33.38289 * 12 3 2 27 27 H 1.08001 * 125.61570 * 180.02562 * 15 14 13 28 28 H 1.08991 * 109.47214 * 265.32454 * 18 17 13 29 29 H 1.08996 * 109.47114 * 25.32975 * 18 17 13 30 30 H 1.08999 * 109.46651 * 145.32646 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3773 1.9805 1.1777 5 1 3.0284 2.8422 1.1687 6 6 1.9042 1.4807 2.3832 7 7 1.0661 0.4658 2.3913 8 14 2.4571 2.2484 3.9940 9 1 2.0642 3.6802 4.0204 10 1 1.8139 1.5370 5.1277 11 1 3.9331 2.1377 4.1142 12 6 2.1227 2.1212 -1.2601 13 6 3.4576 1.8387 -1.8995 14 8 4.6269 2.4438 -1.6121 15 6 5.5689 1.9072 -2.3993 16 7 5.0174 1.0003 -3.1540 17 6 3.7059 0.9367 -2.8636 18 6 2.6964 0.0195 -3.5044 19 1 -0.3633 0.3635 -0.9612 20 1 -0.3633 -1.0142 0.1658 21 1 -0.3633 0.6507 0.7954 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 0.7359 0.1163 3.2337 25 1 2.0331 3.1894 -1.0626 26 1 1.3241 1.8079 -1.9326 27 1 6.6135 2.1816 -2.4068 28 1 2.7050 -0.9435 -2.9942 29 1 1.7033 0.4623 -3.4282 30 1 2.9507 -0.1235 -4.5547 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893969886.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:42 Heat of formation + Delta-G solvation = 45.749854 kcal Electronic energy + Delta-G solvation = -14243.608306 eV Core-core repulsion = 11848.757627 eV Total energy + Delta-G solvation = -2394.850679 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.65022 -36.20138 -34.51327 -32.22267 -30.58916 -29.49232 -27.31587 -25.25299 -23.26898 -21.76263 -20.63515 -19.76002 -16.89311 -16.40007 -16.05476 -14.98834 -14.45465 -13.80874 -13.59466 -13.32188 -12.81234 -12.49962 -12.04710 -11.75081 -11.49014 -11.33595 -10.93596 -10.77547 -10.55588 -10.45200 -10.07679 -9.95789 -9.76813 -9.53504 -8.47298 -8.04579 -6.90280 -5.75944 -3.28623 2.13701 3.20999 3.34624 3.40657 3.42079 3.47804 4.44211 4.65467 5.32543 5.39313 5.49921 5.56181 5.80412 5.98212 6.14537 6.24377 6.37302 6.50997 6.57367 6.75778 6.91148 6.94220 7.04517 7.13574 7.64626 7.79324 8.05650 8.28988 8.37806 9.19064 9.74865 10.20363 11.22298 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.034987 B = 0.011084 C = 0.008973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.104677 B = 2525.514038 C = 3119.591521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.164 3.836 3 N -0.582 5.582 4 C -0.255 4.255 5 H 0.071 0.929 6 C 0.002 3.998 7 N -0.903 5.903 8 Si 0.912 3.088 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.285 1.285 12 C 0.218 3.782 13 C -0.021 4.021 14 O -0.198 6.198 15 C 0.136 3.864 16 N -0.490 5.490 17 C -0.046 4.046 18 C -0.061 4.061 19 H 0.004 0.996 20 H 0.025 0.975 21 H 0.083 0.917 22 H 0.002 0.998 23 H 0.096 0.904 24 H 0.253 0.747 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.238 0.762 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 1.338 -7.457 7.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.039 3.961 3 N -0.301 5.301 4 C -0.384 4.384 5 H 0.089 0.911 6 C -0.195 4.195 7 N -0.549 5.549 8 Si 0.742 3.258 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.211 1.211 12 C 0.088 3.912 13 C -0.079 4.079 14 O -0.082 6.082 15 C -0.091 4.091 16 N -0.220 5.220 17 C -0.167 4.167 18 C -0.118 4.118 19 H 0.023 0.977 20 H 0.044 0.956 21 H 0.101 0.899 22 H 0.020 0.980 23 H 0.114 0.886 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.254 0.746 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.696 0.920 -7.652 8.165 hybrid contribution 0.281 0.671 1.353 1.536 sum 2.977 1.591 -6.299 7.146 Atomic orbital electron populations 1.22211 0.98874 0.99756 0.98726 1.20893 0.92565 0.84026 0.98573 1.44192 1.74309 1.10874 1.00768 1.19285 1.23590 1.11772 0.83740 0.91146 1.24983 0.97808 0.98603 0.98132 1.70122 1.33765 1.26196 1.24823 0.86223 0.78086 0.78653 0.82880 1.20918 1.21524 1.21116 1.19366 0.85327 0.97641 0.88873 1.25775 0.88890 0.95922 0.97274 1.84510 1.17410 1.53660 1.52644 1.27701 0.96523 0.94376 0.90521 1.70174 1.07535 1.18766 1.25522 1.21378 0.91830 1.02329 1.01120 1.19995 0.95042 0.97284 0.99477 0.97673 0.95600 0.89855 0.98032 0.88633 0.93643 0.91364 0.90478 0.74634 0.91299 0.91065 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.44 37.16 0.35 -2.72 16 2 C 0.16 3.92 5.60 -4.04 -0.02 3.89 16 3 N -0.58 -14.26 2.52 -174.61 -0.44 -14.70 16 4 C -0.25 -6.85 9.71 -15.06 -0.15 -6.99 16 5 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 6 C 0.00 0.05 5.27 -17.43 -0.09 -0.04 16 7 N -0.90 -24.71 7.97 55.49 0.44 -24.27 16 8 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.22 4.48 6.09 -5.20 -0.03 4.45 16 13 C -0.02 -0.42 6.97 -35.69 -0.25 -0.67 16 14 O -0.20 -3.93 10.78 5.33 0.06 -3.87 16 15 C 0.14 2.27 13.23 52.09 0.69 2.96 16 16 N -0.49 -9.21 11.29 -11.18 -0.13 -9.33 16 17 C -0.05 -0.89 7.11 -82.81 -0.59 -1.47 16 18 C -0.06 -0.95 9.83 36.01 0.35 -0.60 16 19 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 20 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 21 H 0.08 2.12 6.50 -51.93 -0.34 1.78 16 22 H 0.00 0.03 7.35 -51.93 -0.38 -0.35 16 23 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 24 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 25 H 0.07 1.37 8.01 -51.93 -0.42 0.95 16 26 H 0.08 1.41 6.85 -51.93 -0.36 1.06 16 27 H 0.24 2.62 8.06 -52.49 -0.42 2.20 16 28 H 0.07 1.09 7.82 -51.93 -0.41 0.68 16 29 H 0.07 1.02 6.92 -51.93 -0.36 0.67 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 254.70 15.07 3.84 3.84 Total: -1.00 -29.80 254.70 -4.79 -34.59 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -3.80 Total: -1.54 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 0.26 Total: -1.20 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.12 Total: -48.30 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: 0.06 Total: -3.87 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.80 -4.79 -34.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893969886.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.342 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds