Wall clock time and date at job start Sun Mar 29 2020 21:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47128 * 2 1 4 4 C 1.36936 * 120.00164 * 96.71475 * 3 2 1 5 5 H 1.08003 * 120.00073 * 159.63496 * 4 3 2 6 6 C 1.38806 * 119.99832 * 339.63106 * 4 3 2 7 7 N 1.31621 * 120.00064 * 357.14451 * 6 4 3 8 8 Si 1.86804 * 119.99982 * 177.14577 * 6 4 3 9 9 H 1.48497 * 109.46910 * 59.99924 * 8 6 4 10 10 H 1.48497 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46999 * 300.00032 * 8 6 4 12 12 C 1.46504 * 119.99650 * 276.71136 * 3 2 1 13 13 C 1.50692 * 109.47365 * 273.37714 * 12 3 2 14 14 O 1.34758 * 126.44253 * 277.03518 * 13 12 3 15 15 C 1.33973 * 107.75375 * 180.02562 * 14 13 12 16 16 N 1.30250 * 108.76163 * 0.02562 * 15 14 13 17 17 C 1.34334 * 126.44605 * 97.06360 * 13 12 3 18 18 C 1.50702 * 126.16150 * 359.97438 * 17 13 12 19 19 H 1.08995 * 109.47219 * 69.28469 * 1 2 3 20 20 H 1.09003 * 109.47027 * 189.28371 * 1 2 3 21 21 H 1.08998 * 109.46829 * 309.28371 * 1 2 3 22 22 H 1.09004 * 109.46887 * 239.99903 * 2 1 3 23 23 H 1.09001 * 109.47122 * 120.00151 * 2 1 3 24 24 H 0.97000 * 119.99741 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.46812 * 153.37573 * 12 3 2 26 26 H 1.08999 * 109.47026 * 33.38289 * 12 3 2 27 27 H 1.08001 * 125.61570 * 180.02562 * 15 14 13 28 28 H 1.08991 * 109.47214 * 265.32454 * 18 17 13 29 29 H 1.08996 * 109.47114 * 25.32975 * 18 17 13 30 30 H 1.08999 * 109.46651 * 145.32646 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3773 1.9805 1.1777 5 1 3.0284 2.8422 1.1687 6 6 1.9042 1.4807 2.3832 7 7 1.0661 0.4658 2.3913 8 14 2.4571 2.2484 3.9940 9 1 2.0642 3.6802 4.0204 10 1 1.8139 1.5370 5.1277 11 1 3.9331 2.1377 4.1142 12 6 2.1227 2.1212 -1.2601 13 6 3.4576 1.8387 -1.8995 14 8 4.6269 2.4438 -1.6121 15 6 5.5689 1.9072 -2.3993 16 7 5.0174 1.0003 -3.1540 17 6 3.7059 0.9367 -2.8636 18 6 2.6964 0.0195 -3.5044 19 1 -0.3633 0.3635 -0.9612 20 1 -0.3633 -1.0142 0.1658 21 1 -0.3633 0.6507 0.7954 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 0.7359 0.1163 3.2337 25 1 2.0331 3.1894 -1.0626 26 1 1.3241 1.8079 -1.9326 27 1 6.6135 2.1816 -2.4068 28 1 2.7050 -0.9435 -2.9942 29 1 1.7033 0.4623 -3.4282 30 1 2.9507 -0.1235 -4.5547 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893969886.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:42 Heat of formation + Delta-G solvation = 25.720552 kcal Electronic energy + Delta-G solvation = -14244.476841 eV Core-core repulsion = 11848.757627 eV Total energy + Delta-G solvation = -2395.719215 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.08700 -38.02437 -35.95390 -33.96038 -32.31816 -31.18703 -28.89270 -26.86187 -25.09812 -23.27999 -22.25675 -21.38059 -18.75712 -17.83940 -17.63168 -16.83567 -15.92205 -15.53393 -15.37014 -14.95683 -14.11291 -13.95626 -13.75648 -13.40858 -13.18296 -12.88154 -12.76821 -12.55000 -12.45464 -11.96952 -11.84955 -11.68202 -11.49687 -11.36016 -10.43449 -9.52029 -8.80309 -7.77145 -5.30826 0.69427 1.47731 1.48362 1.55031 1.81041 2.10852 2.51266 3.31642 3.43998 3.71096 4.05985 4.14033 4.33452 4.69720 4.72846 4.81013 4.87701 4.95882 5.10782 5.14060 5.25243 5.30403 5.35192 5.57335 5.60245 5.83645 6.18368 6.39365 6.88072 7.19554 7.83691 8.24459 9.18413 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.034987 B = 0.011084 C = 0.008973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.104677 B = 2525.514038 C = 3119.591521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.170 3.830 3 N -0.599 5.599 4 C -0.266 4.266 5 H 0.063 0.937 6 C -0.044 4.044 7 N -0.918 5.918 8 Si 0.968 3.032 9 H -0.278 1.278 10 H -0.291 1.291 11 H -0.286 1.286 12 C 0.222 3.778 13 C -0.054 4.054 14 O -0.218 6.218 15 C 0.156 3.844 16 N -0.516 5.516 17 C -0.044 4.044 18 C -0.061 4.061 19 H 0.028 0.972 20 H 0.034 0.966 21 H 0.051 0.949 22 H 0.018 0.982 23 H 0.059 0.941 24 H 0.247 0.753 25 H 0.065 0.935 26 H 0.099 0.901 27 H 0.288 0.712 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 1.527 -8.470 9.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.045 3.955 3 N -0.319 5.319 4 C -0.396 4.396 5 H 0.081 0.919 6 C -0.239 4.239 7 N -0.564 5.564 8 Si 0.796 3.204 9 H -0.204 1.204 10 H -0.217 1.217 11 H -0.212 1.212 12 C 0.094 3.906 13 C -0.111 4.111 14 O -0.104 6.104 15 C -0.071 4.071 16 N -0.246 5.246 17 C -0.164 4.164 18 C -0.118 4.118 19 H 0.047 0.953 20 H 0.053 0.947 21 H 0.070 0.930 22 H 0.036 0.964 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.117 0.883 27 H 0.303 0.697 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.303 1.113 -8.701 9.373 hybrid contribution 0.209 0.630 1.562 1.698 sum 3.512 1.743 -7.139 8.144 Atomic orbital electron populations 1.21997 0.97816 0.99621 0.98750 1.20714 0.93343 0.83924 0.97501 1.44302 1.74918 1.11224 1.01488 1.19442 1.23429 1.11650 0.85093 0.91883 1.25618 0.98356 0.99334 1.00617 1.70299 1.34449 1.26917 1.24780 0.85349 0.77343 0.78026 0.79646 1.20377 1.21744 1.21245 1.19415 0.86417 0.97093 0.87697 1.25420 0.89009 0.97684 0.98972 1.84482 1.17961 1.54402 1.53586 1.28913 0.97693 0.92310 0.88139 1.70240 1.07568 1.20066 1.26723 1.21869 0.92542 1.01651 1.00290 1.20111 0.94936 0.96543 1.00250 0.95277 0.94733 0.93035 0.96381 0.92249 0.94290 0.91675 0.88297 0.69734 0.91431 0.89758 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 9.44 71.98 0.68 -4.72 16 2 C 0.17 8.05 5.60 86.38 0.48 8.54 16 3 N -0.60 -29.19 2.52 -706.35 -1.78 -30.97 16 4 C -0.27 -14.40 9.71 84.03 0.82 -13.59 16 5 H 0.06 3.41 7.83 -2.91 -0.02 3.39 16 6 C -0.04 -2.39 5.27 84.86 0.45 -1.94 16 7 N -0.92 -50.90 7.97 21.65 0.17 -50.72 16 8 Si 0.97 44.50 29.55 68.60 2.03 46.53 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 12 C 0.22 8.93 6.09 85.63 0.52 9.45 16 13 C -0.05 -2.13 6.97 24.79 0.17 -1.96 16 14 O -0.22 -8.36 10.78 -3.84 -0.04 -8.41 16 15 C 0.16 4.80 13.23 130.48 1.73 6.52 16 16 N -0.52 -18.19 11.29 -304.06 -3.43 -21.63 16 17 C -0.04 -1.59 7.11 41.26 0.29 -1.30 16 18 C -0.06 -1.78 9.83 71.24 0.70 -1.08 16 19 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 20 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.05 2.61 6.50 -2.39 -0.02 2.60 16 22 H 0.02 0.79 7.35 -2.38 -0.02 0.77 16 23 H 0.06 3.26 5.95 -2.39 -0.01 3.25 16 24 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 25 H 0.06 2.60 8.01 -2.39 -0.02 2.58 16 26 H 0.10 3.45 6.85 -2.39 -0.02 3.43 16 27 H 0.29 5.17 8.06 -2.91 -0.02 5.14 16 28 H 0.07 1.99 7.82 -2.39 -0.02 1.97 16 29 H 0.08 2.19 6.92 -2.39 -0.02 2.18 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -63.44 254.70 3.91 -59.52 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 1.13 Total: 5.76 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 5.84 Total: -0.08 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -5.04 Total: -103.32 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.04 Total: -8.41 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -63.44 3.91 -59.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893969886.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.245 kcal (2) G-P(sol) polarization free energy of solvation -63.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds