Wall clock time and date at job start Sun Mar 29 2020 21:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34485 * 126.16042 * 2 1 4 4 C 1.30260 * 108.69814 * 179.97438 * 3 2 1 5 5 O 1.33967 * 108.75886 * 359.97438 * 4 3 2 6 6 C 1.34330 * 126.17007 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.44063 * 359.97438 * 6 2 1 8 8 N 1.46907 * 109.46406 * 90.00594 * 7 6 2 9 9 C 1.46902 * 110.99342 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46665 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46990 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00059 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00088 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99667 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00083 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47126 * 59.99757 * 15 13 11 17 17 H 1.48496 * 109.47149 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47116 * 299.99996 * 15 13 11 19 19 H 1.09010 * 109.46874 * 90.03209 * 1 2 3 20 20 H 1.09001 * 109.47525 * 210.02227 * 1 2 3 21 21 H 1.08999 * 109.47609 * 330.02940 * 1 2 3 22 22 H 1.07997 * 125.61808 * 179.97438 * 4 3 2 23 23 H 1.08993 * 109.46842 * 210.00401 * 7 6 2 24 24 H 1.08999 * 109.47191 * 330.00622 * 7 6 2 25 25 H 1.00892 * 111.00188 * 56.04702 * 8 7 6 26 26 H 1.08997 * 109.47026 * 299.99598 * 9 8 7 27 27 H 1.08998 * 109.47655 * 59.99931 * 9 8 7 28 28 H 1.08997 * 109.47062 * 299.99566 * 10 9 8 29 29 H 1.08992 * 109.47418 * 59.99951 * 10 9 8 30 30 H 0.97000 * 119.99522 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5431 0.6949 0.0006 5 8 3.5734 -0.6444 0.0015 6 6 2.2998 -1.0844 0.0005 7 6 1.8494 -2.5226 0.0017 8 7 1.7027 -2.9907 -1.3831 9 6 1.2632 -4.3920 -1.4211 10 6 1.1226 -4.8429 -2.8764 11 6 0.6712 -6.2802 -2.9155 12 1 0.5019 -6.8183 -1.9946 13 6 0.4753 -6.9086 -4.1271 14 7 0.6819 -6.2534 -5.2485 15 14 -0.0836 -8.6903 -4.1756 16 1 -1.3947 -8.8167 -3.4897 17 1 -0.2202 -9.1279 -5.5880 18 1 0.9192 -9.5425 -3.4875 19 1 -0.3633 -0.0006 -1.0278 20 1 -0.3634 -0.8898 0.5142 21 1 -0.3634 0.8902 0.5134 22 1 4.4065 1.3436 0.0003 23 1 2.5902 -3.1348 0.5157 24 1 0.8916 -2.6029 0.5158 25 1 2.5604 -2.8663 -1.8996 26 1 1.9997 -5.0175 -0.9168 27 1 0.3013 -4.4850 -0.9170 28 1 0.3864 -4.2174 -3.3811 29 1 2.0847 -4.7501 -3.3801 30 1 0.5437 -6.6954 -6.1009 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894446087.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:37 Heat of formation + Delta-G solvation = 9.471809 kcal Electronic energy + Delta-G solvation = -13194.475654 eV Core-core repulsion = 10798.051841 eV Total energy + Delta-G solvation = -2396.423813 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.27334 -36.28237 -35.08023 -33.22593 -31.74816 -29.60735 -27.50572 -25.27080 -23.44847 -22.00413 -20.85426 -20.46897 -17.08329 -16.68295 -16.26757 -15.53687 -15.05648 -14.42825 -14.09003 -13.75998 -13.16177 -12.96856 -12.49338 -12.30197 -12.12589 -11.91137 -11.11991 -10.95287 -10.94848 -10.63609 -10.49182 -10.05553 -9.50195 -9.22802 -8.62997 -8.37871 -7.98089 -6.02093 -4.05365 1.49462 2.70853 2.80495 3.32114 3.36783 3.38788 4.16792 4.41711 4.74402 4.86783 4.94889 5.22895 5.33900 5.47492 5.67604 5.79287 5.85746 5.98968 6.13391 6.22357 6.28609 6.42507 6.88409 7.30240 7.64324 7.70590 7.75378 7.84857 8.02879 8.38544 9.01501 9.58644 11.09290 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.066359 B = 0.005161 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.847048 B = 5423.888554 C = 5490.968511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.000 4.000 3 N -0.488 5.488 4 C 0.162 3.838 5 O -0.206 6.206 6 C -0.038 4.038 7 C 0.144 3.856 8 N -0.686 5.686 9 C 0.066 3.934 10 C 0.025 3.975 11 C -0.524 4.524 12 H 0.054 0.946 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 H 0.079 0.921 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.247 0.753 23 H 0.043 0.957 24 H 0.102 0.898 25 H 0.341 0.659 26 H 0.019 0.981 27 H 0.063 0.937 28 H 0.027 0.973 29 H 0.014 0.986 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.562 10.495 10.891 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 N -0.218 5.218 4 C -0.065 4.065 5 O -0.092 6.092 6 C -0.091 4.091 7 C 0.014 3.986 8 N -0.318 5.318 9 C -0.062 4.062 10 C -0.012 4.012 11 C -0.563 4.563 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.203 1.203 19 H 0.098 0.902 20 H 0.093 0.907 21 H 0.088 0.912 22 H 0.263 0.737 23 H 0.061 0.939 24 H 0.120 0.880 25 H 0.158 0.842 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.032 0.968 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.758 11.302 10.631 15.760 hybrid contribution 0.973 -1.938 0.088 2.170 sum 3.731 9.364 10.719 14.714 Atomic orbital electron populations 1.20097 0.86362 1.02648 1.03395 1.21481 0.98054 0.87292 1.05237 1.70335 1.01450 1.31986 1.18025 1.27908 0.97532 0.79463 1.01553 1.84418 1.30507 1.24573 1.69691 1.23288 0.80393 0.98180 1.07209 1.20324 1.00390 0.84812 0.93054 1.60685 1.37599 1.23622 1.09850 1.22228 0.98392 0.83690 1.01884 1.19067 0.97571 0.95744 0.88816 1.21116 1.45980 0.96891 0.92305 0.92726 1.25001 0.95482 0.98123 0.95688 1.69963 1.49024 1.36819 0.97371 0.86631 0.79258 0.84972 0.76962 1.20179 1.21247 1.20281 0.90191 0.90705 0.91228 0.73743 0.93860 0.88013 0.84184 0.96244 0.91875 0.95506 0.96756 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.22 36.00 0.37 -0.46 16 2 C 0.00 -0.01 7.11 -82.81 -0.59 -0.60 16 3 N -0.49 -7.01 11.30 -11.18 -0.13 -7.14 16 4 C 0.16 1.89 13.23 52.10 0.69 2.58 16 5 O -0.21 -2.85 10.77 5.38 0.06 -2.79 16 6 C -0.04 -0.55 6.90 -35.69 -0.25 -0.79 16 7 C 0.14 2.07 6.02 -4.97 -0.03 2.04 16 8 N -0.69 -12.09 6.49 -115.05 -0.75 -12.83 16 9 C 0.07 1.33 5.62 -3.82 -0.02 1.31 16 10 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16 11 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 15 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 20 H 0.07 0.81 7.17 -51.93 -0.37 0.44 16 21 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.25 1.50 8.06 -52.49 -0.42 1.08 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.10 1.32 7.17 -51.93 -0.37 0.95 16 25 H 0.34 6.05 8.72 -39.30 -0.34 5.71 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 265.76 15.07 4.00 4.00 Total: -1.00 -31.91 265.76 -5.49 -37.40 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.01 Total: -0.16 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -0.39 Total: -8.85 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.14 Total: -46.07 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: 0.06 Total: -2.79 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.91 -5.49 -37.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894446087.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.874 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds