Wall clock time and date at job start Sun Mar 29 2020 21:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34485 * 126.16042 * 2 1 4 4 C 1.30260 * 108.69814 * 179.97438 * 3 2 1 5 5 O 1.33967 * 108.75886 * 359.97438 * 4 3 2 6 6 C 1.34330 * 126.17007 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.44063 * 359.97438 * 6 2 1 8 8 N 1.46907 * 109.46406 * 90.00594 * 7 6 2 9 9 C 1.46902 * 110.99342 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46665 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46990 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00059 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00088 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99667 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00083 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47126 * 59.99757 * 15 13 11 17 17 H 1.48496 * 109.47149 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47116 * 299.99996 * 15 13 11 19 19 H 1.09010 * 109.46874 * 90.03209 * 1 2 3 20 20 H 1.09001 * 109.47525 * 210.02227 * 1 2 3 21 21 H 1.08999 * 109.47609 * 330.02940 * 1 2 3 22 22 H 1.07997 * 125.61808 * 179.97438 * 4 3 2 23 23 H 1.08993 * 109.46842 * 210.00401 * 7 6 2 24 24 H 1.08999 * 109.47191 * 330.00622 * 7 6 2 25 25 H 1.00892 * 111.00188 * 56.04702 * 8 7 6 26 26 H 1.08997 * 109.47026 * 299.99598 * 9 8 7 27 27 H 1.08998 * 109.47655 * 59.99931 * 9 8 7 28 28 H 1.08997 * 109.47062 * 299.99566 * 10 9 8 29 29 H 1.08992 * 109.47418 * 59.99951 * 10 9 8 30 30 H 0.97000 * 119.99522 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5431 0.6949 0.0006 5 8 3.5734 -0.6444 0.0015 6 6 2.2998 -1.0844 0.0005 7 6 1.8494 -2.5226 0.0017 8 7 1.7027 -2.9907 -1.3831 9 6 1.2632 -4.3920 -1.4211 10 6 1.1226 -4.8429 -2.8764 11 6 0.6712 -6.2802 -2.9155 12 1 0.5019 -6.8183 -1.9946 13 6 0.4753 -6.9086 -4.1271 14 7 0.6819 -6.2534 -5.2485 15 14 -0.0836 -8.6903 -4.1756 16 1 -1.3947 -8.8167 -3.4897 17 1 -0.2202 -9.1279 -5.5880 18 1 0.9192 -9.5425 -3.4875 19 1 -0.3633 -0.0006 -1.0278 20 1 -0.3634 -0.8898 0.5142 21 1 -0.3634 0.8902 0.5134 22 1 4.4065 1.3436 0.0003 23 1 2.5902 -3.1348 0.5157 24 1 0.8916 -2.6029 0.5158 25 1 2.5604 -2.8663 -1.8996 26 1 1.9997 -5.0175 -0.9168 27 1 0.3013 -4.4850 -0.9170 28 1 0.3864 -4.2174 -3.3811 29 1 2.0847 -4.7501 -3.3801 30 1 0.5437 -6.6954 -6.1009 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894446087.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:37 Heat of formation + Delta-G solvation = -15.373697 kcal Electronic energy + Delta-G solvation = -13195.553036 eV Core-core repulsion = 10798.051841 eV Total energy + Delta-G solvation = -2397.501195 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.28656 -37.74265 -36.12041 -35.17345 -33.13719 -31.18194 -28.79939 -26.72778 -25.05851 -23.05150 -22.51393 -21.68735 -18.52804 -18.07227 -17.64739 -16.91852 -16.49663 -15.98773 -15.46022 -15.18815 -14.29690 -14.18094 -14.08770 -13.75650 -13.60579 -13.04079 -12.85171 -12.79492 -12.46508 -11.98984 -11.98200 -11.58292 -11.40406 -11.31117 -10.55302 -9.73335 -9.36484 -8.19396 -6.31178 0.47201 1.42321 1.45414 1.53320 1.69408 1.84270 2.42012 3.14556 3.32708 3.40365 3.76425 3.94163 4.19275 4.39093 4.55362 4.58594 4.71436 4.81255 4.87810 5.00861 5.06312 5.18142 5.43922 5.47157 5.65332 5.75966 6.05626 6.19143 6.36746 6.74624 6.86298 7.38488 8.92696 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.066359 B = 0.005161 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.847048 B = 5423.888554 C = 5490.968511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.010 4.010 3 N -0.522 5.522 4 C 0.183 3.817 5 O -0.216 6.216 6 C -0.060 4.060 7 C 0.149 3.851 8 N -0.693 5.693 9 C 0.085 3.915 10 C 0.030 3.970 11 C -0.544 4.544 12 H 0.065 0.935 13 C 0.000 4.000 14 N -0.934 5.934 15 Si 0.968 3.032 16 H -0.265 1.265 17 H -0.285 1.285 18 H -0.266 1.266 19 H 0.071 0.929 20 H 0.087 0.913 21 H 0.079 0.921 22 H 0.295 0.705 23 H 0.054 0.946 24 H 0.117 0.883 25 H 0.337 0.663 26 H 0.026 0.974 27 H 0.071 0.929 28 H -0.005 1.005 29 H -0.012 1.012 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.737 10.192 12.215 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.129 4.129 3 N -0.252 5.252 4 C -0.044 4.044 5 O -0.103 6.103 6 C -0.113 4.113 7 C 0.021 3.979 8 N -0.324 5.324 9 C -0.044 4.044 10 C -0.007 4.007 11 C -0.583 4.583 12 H 0.083 0.917 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.792 3.208 16 H -0.190 1.190 17 H -0.210 1.210 18 H -0.191 1.191 19 H 0.090 0.910 20 H 0.105 0.895 21 H 0.098 0.902 22 H 0.310 0.690 23 H 0.072 0.928 24 H 0.135 0.865 25 H 0.155 0.845 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.013 0.987 29 H 0.007 0.993 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.923 11.010 11.980 16.531 hybrid contribution 0.987 -1.712 -0.320 2.002 sum 3.910 9.298 11.660 15.418 Atomic orbital electron populations 1.20161 0.85376 1.03826 1.03168 1.21856 0.99031 0.87495 1.04560 1.70369 1.02621 1.32287 1.19927 1.29088 0.98272 0.79040 0.97955 1.84422 1.30232 1.25641 1.69996 1.23216 0.80832 0.98133 1.09104 1.20315 1.01618 0.85042 0.90967 1.60575 1.37726 1.21816 1.12298 1.21836 0.99205 0.85342 0.97974 1.18928 0.95017 0.94814 0.91982 1.21594 1.45776 0.98045 0.92869 0.91713 1.25988 0.95440 1.03105 0.95243 1.70109 1.50209 1.38973 0.98068 0.85463 0.79257 0.78973 0.77114 1.19000 1.21038 1.19101 0.91000 0.89476 0.90171 0.68963 0.92827 0.86505 0.84540 0.95543 0.91058 0.98678 0.99314 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.60 10.22 71.23 0.73 -0.87 16 2 C -0.01 -0.28 7.11 41.26 0.29 0.01 16 3 N -0.52 -14.20 11.30 -304.07 -3.43 -17.63 16 4 C 0.18 3.82 13.23 130.48 1.73 5.54 16 5 O -0.22 -5.61 10.77 -3.68 -0.04 -5.65 16 6 C -0.06 -1.68 6.90 24.79 0.17 -1.51 16 7 C 0.15 4.09 6.02 85.56 0.52 4.61 16 8 N -0.69 -24.13 6.49 -517.91 -3.36 -27.49 16 9 C 0.08 3.39 5.62 86.30 0.49 3.88 16 10 C 0.03 1.58 5.23 29.85 0.16 1.74 16 11 C -0.54 -30.60 9.11 25.60 0.23 -30.37 16 12 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 13 C 0.00 0.01 5.46 84.66 0.46 0.47 16 14 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 15 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 19 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 20 H 0.09 1.78 7.17 -2.39 -0.02 1.76 16 21 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.30 2.48 8.06 -2.91 -0.02 2.46 16 23 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.12 2.81 7.17 -2.39 -0.02 2.79 16 25 H 0.34 12.04 8.72 -89.70 -0.78 11.26 16 26 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 28 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -68.83 265.76 0.60 -68.23 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.35 Total: 10.04 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 4.77 Total: -16.50 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -6.51 Total: -101.91 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.04 Total: -5.65 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -68.83 0.60 -68.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894446087.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.855 kcal (2) G-P(sol) polarization free energy of solvation -68.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds