Wall clock time and date at job start Sun Mar 29 2020 21:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 109.47146 * 2 1 4 4 N 1.30262 * 125.61934 * 89.97164 * 3 2 1 5 5 C 1.34477 * 108.69840 * 180.02562 * 4 3 2 6 6 C 1.34333 * 107.67272 * 0.02562 * 5 4 3 7 7 C 1.50693 * 126.44179 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.47644 * 90.02196 * 7 6 5 9 9 C 1.46499 * 120.00204 * 270.00007 * 8 7 6 10 10 C 1.36944 * 119.99960 * 89.99458 * 8 7 6 11 11 H 1.07998 * 120.00302 * 22.36422 * 10 8 7 12 12 C 1.38811 * 119.99551 * 202.36561 * 10 8 7 13 13 N 1.31617 * 120.00431 * 11.35213 * 12 10 8 14 14 Si 1.86807 * 119.99709 * 191.35411 * 12 10 8 15 15 H 1.48505 * 109.46861 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47096 * 120.00026 * 14 12 10 17 17 H 1.48504 * 109.47086 * 240.00210 * 14 12 10 18 18 O 1.33970 * 125.61910 * 270.00209 * 3 2 1 19 19 H 1.09002 * 109.47381 * 299.99468 * 1 2 3 20 20 H 1.09003 * 109.47561 * 59.99808 * 1 2 3 21 21 H 1.09004 * 109.47120 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47354 * 240.00023 * 2 1 3 23 23 H 1.09005 * 109.47692 * 119.99677 * 2 1 3 24 24 H 1.08000 * 126.16543 * 180.02562 * 5 4 3 25 25 H 1.09004 * 109.46757 * 210.02034 * 7 6 5 26 26 H 1.09003 * 109.47662 * 330.01670 * 7 6 5 27 27 H 1.09002 * 109.47389 * 94.18865 * 9 8 7 28 28 H 1.08994 * 109.47305 * 214.19644 * 9 8 7 29 29 H 1.09005 * 109.46438 * 334.19199 * 9 8 7 30 30 H 0.97006 * 120.00006 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2847 2.1362 1.0589 5 6 2.7132 3.3493 0.6675 6 6 2.7188 3.3660 -0.6757 7 6 3.1268 4.5199 -1.5548 8 7 4.5611 4.4330 -1.8405 9 6 5.5258 5.0870 -0.9529 10 6 5.0000 3.7402 -2.9372 11 1 4.3344 3.5701 -3.7705 12 6 6.3005 3.2565 -2.9777 13 7 7.0394 3.2633 -1.8885 14 14 7.0020 2.5961 -4.5782 15 1 5.9764 2.6981 -5.6474 16 1 8.1969 3.3908 -4.9601 17 1 7.3898 1.1738 -4.3990 18 8 2.2923 2.1564 -1.0891 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 3.0009 4.1635 1.3162 25 1 2.5672 4.4802 -2.4894 26 1 2.9144 5.4590 -1.0438 27 1 5.8818 4.3708 -0.2124 28 1 6.3686 5.4531 -1.5391 29 1 5.0444 5.9239 -0.4469 30 1 7.9481 2.9249 -1.9168 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929488754.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:33 Heat of formation + Delta-G solvation = 14.540445 kcal Electronic energy + Delta-G solvation = -13892.502586 eV Core-core repulsion = 11496.298565 eV Total energy + Delta-G solvation = -2396.204021 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.08685 -37.67077 -35.67451 -34.82592 -33.55852 -30.83354 -28.10055 -27.36154 -24.88587 -23.59078 -22.60948 -21.57853 -18.87663 -17.91971 -17.48624 -16.89306 -15.79139 -15.69063 -15.48166 -15.13500 -14.66540 -14.23097 -13.73582 -13.46670 -13.07683 -12.88181 -12.67688 -12.56327 -12.34175 -12.16907 -12.10535 -12.03069 -11.94225 -11.46127 -10.75478 -9.55493 -8.97506 -7.93225 -5.43691 0.65484 1.42480 1.43418 1.54574 1.80600 1.95144 2.45294 3.19176 3.27970 3.68133 4.03167 4.17569 4.23009 4.29216 4.48042 4.53596 4.74840 4.80495 4.93804 5.01414 5.06483 5.26301 5.28397 5.29425 5.53941 5.55618 5.67051 6.21795 6.87433 7.04090 7.71316 8.13417 9.09643 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.034158 B = 0.009425 C = 0.008215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.514124 B = 2970.028166 C = 3407.488175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.024 4.024 3 C 0.158 3.842 4 N -0.508 5.508 5 C -0.073 4.073 6 C -0.047 4.047 7 C 0.218 3.782 8 N -0.601 5.601 9 C 0.173 3.827 10 C -0.271 4.271 11 H 0.075 0.925 12 C -0.050 4.050 13 N -0.935 5.935 14 Si 0.972 3.028 15 H -0.263 1.263 16 H -0.285 1.285 17 H -0.294 1.294 18 O -0.217 6.217 19 H 0.055 0.945 20 H 0.053 0.947 21 H 0.100 0.900 22 H 0.099 0.901 23 H 0.111 0.889 24 H 0.190 0.810 25 H 0.071 0.929 26 H 0.115 0.885 27 H -0.002 1.002 28 H 0.026 0.974 29 H 0.044 0.956 30 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.817 -2.390 1.978 11.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.062 4.062 3 C -0.049 4.049 4 N -0.238 5.238 5 C -0.212 4.212 6 C -0.104 4.104 7 C 0.090 3.910 8 N -0.322 5.322 9 C 0.028 3.972 10 C -0.401 4.401 11 H 0.093 0.907 12 C -0.246 4.246 13 N -0.581 5.581 14 Si 0.800 3.200 15 H -0.187 1.187 16 H -0.211 1.211 17 H -0.221 1.221 18 O -0.103 6.103 19 H 0.074 0.926 20 H 0.072 0.928 21 H 0.118 0.882 22 H 0.117 0.883 23 H 0.129 0.871 24 H 0.207 0.793 25 H 0.089 0.911 26 H 0.133 0.867 27 H 0.016 0.984 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.704 -2.624 2.539 11.310 hybrid contribution 1.088 -0.170 -1.075 1.539 sum -9.616 -2.794 1.464 10.120 Atomic orbital electron populations 1.21722 0.91505 1.04224 1.02137 1.20246 0.98052 0.82240 1.05708 1.27167 1.00603 0.98383 0.78718 1.70265 1.17829 1.04483 1.31250 1.23173 1.07591 0.96874 0.93513 1.25933 1.00163 0.87164 0.97112 1.19926 0.84467 0.90341 0.96233 1.44469 1.01057 1.58937 1.27694 1.20667 0.91223 0.92993 0.92289 1.19656 0.96978 1.29183 0.94320 0.90734 1.25912 0.98732 0.99618 1.00297 1.70263 1.09331 1.50776 1.27709 0.85134 0.78324 0.77094 0.79490 1.18691 1.21146 1.22138 1.84425 1.63837 1.23584 1.38498 0.92608 0.92827 0.88180 0.88301 0.87070 0.79265 0.91115 0.86715 0.98380 0.95509 0.93714 0.94098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.89 71.98 0.71 -2.04 16 2 C -0.02 -0.63 6.56 29.85 0.20 -0.44 16 3 C 0.16 6.01 7.60 88.34 0.67 6.68 16 4 N -0.51 -20.69 11.29 -303.82 -3.43 -24.12 16 5 C -0.07 -2.95 11.80 83.40 0.98 -1.97 16 6 C -0.05 -2.00 6.97 24.79 0.17 -1.82 16 7 C 0.22 8.76 6.26 85.63 0.54 9.30 16 8 N -0.60 -30.00 2.91 -731.31 -2.13 -32.13 16 9 C 0.17 8.42 9.01 127.77 1.15 9.58 16 10 C -0.27 -14.98 9.67 84.03 0.81 -14.17 16 11 H 0.07 4.00 7.84 -2.91 -0.02 3.98 16 12 C -0.05 -2.83 5.13 84.86 0.44 -2.39 16 13 N -0.94 -55.97 10.59 21.65 0.23 -55.74 16 14 Si 0.97 45.24 29.57 68.60 2.03 47.27 16 15 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 16 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 18 O -0.22 -9.42 10.78 -3.78 -0.04 -9.46 16 19 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 20 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 22 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.11 2.57 8.14 -2.38 -0.02 2.55 16 24 H 0.19 6.63 8.06 -2.91 -0.02 6.61 16 25 H 0.07 2.71 8.03 -2.38 -0.02 2.70 16 26 H 0.12 3.70 7.86 -2.39 -0.02 3.68 16 27 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 28 H 0.03 1.40 7.19 -2.39 -0.02 1.38 16 29 H 0.04 1.76 7.84 -2.38 -0.02 1.74 16 30 H 0.25 14.49 8.31 -92.70 -0.77 13.71 16 Total: -1.00 -69.06 262.62 3.44 -65.62 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 1.12 Total: 5.85 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 5.67 Total: 2.72 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -5.33 Total: -111.99 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.04 Total: -9.46 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -69.06 3.44 -65.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929488754.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.160 kcal (2) G-P(sol) polarization free energy of solvation -69.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds