Wall clock time and date at job start Sun Mar 29 2020 21:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.47200 * 113.25632 * 2 1 4 4 N 2.60800 * 113.25434 * 0.02562 * 2 1 3 5 5 C 1.53514 * 114.17147 * 132.94890 * 2 1 3 6 6 N 1.47482 * 87.93039 * 87.81652 * 5 2 1 7 7 C 1.46901 * 110.99764 * 138.70591 * 6 5 2 8 8 C 1.53000 * 109.46769 * 169.99993 * 7 6 5 9 9 H 1.08992 * 109.47399 * 59.99697 * 8 7 6 10 10 O 1.42900 * 109.47041 * 299.99294 * 8 7 6 11 11 C 1.50706 * 109.46735 * 180.02562 * 8 7 6 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.46725 * 60.00093 * 15 13 11 17 17 H 1.48505 * 109.46988 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47116 * 300.00069 * 15 13 11 19 19 C 1.47480 * 87.83699 * 27.01095 * 6 5 2 20 20 H 1.08999 * 109.47168 * 287.04721 * 1 2 3 21 21 H 1.08996 * 109.47198 * 47.05494 * 1 2 3 22 22 H 1.09003 * 109.46992 * 167.05161 * 1 2 3 23 23 H 1.08994 * 113.47382 * 333.04496 * 5 2 1 24 24 H 1.09003 * 113.47448 * 202.58404 * 5 2 1 25 25 H 1.09002 * 109.47401 * 49.99700 * 7 6 5 26 26 H 1.09001 * 109.46874 * 289.99713 * 7 6 5 27 27 H 0.96698 * 114.00516 * 300.00983 * 10 8 7 28 28 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 29 29 H 1.08999 * 113.47664 * 87.75895 * 19 6 5 30 30 H 1.08994 * 113.47488 * 218.22090 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1112 1.3524 0.0000 4 7 2.5597 2.3961 0.0011 5 6 2.1586 -0.9543 1.0251 6 7 2.0855 -2.0148 0.0029 7 6 3.3049 -2.8340 0.0063 8 6 3.0961 -4.0629 -0.8809 9 1 2.8762 -3.7427 -1.8993 10 8 2.0032 -4.8337 -0.3774 11 6 4.3469 -4.9036 -0.8770 12 1 5.2049 -4.5923 -0.2998 13 6 4.3956 -6.0702 -1.6103 14 7 3.3505 -6.4496 -2.3127 15 14 5.9462 -7.1120 -1.6060 16 1 6.2459 -7.5476 -0.2183 17 1 5.7430 -8.3055 -2.4660 18 1 7.0818 -6.3113 -2.1297 19 6 2.1629 -0.9561 -1.0208 20 1 -0.3633 0.3013 0.9825 21 1 -0.3633 0.7001 -0.7522 22 1 -0.3633 -1.0016 -0.2303 23 1 1.5234 -1.1410 1.8909 24 1 3.1786 -0.6856 1.3000 25 1 3.5248 -3.1542 1.0247 26 1 4.1386 -2.2461 -0.3777 27 1 2.1302 -5.1526 0.5266 28 1 3.3846 -7.2705 -2.8283 29 1 3.1840 -0.6879 -1.2919 30 1 1.5313 -1.1445 -1.8889 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930300752.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:39 Heat of formation + Delta-G solvation = 11.524115 kcal Electronic energy + Delta-G solvation = -13650.494666 eV Core-core repulsion = 11254.159847 eV Total energy + Delta-G solvation = -2396.334819 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.49598 -36.37327 -35.46823 -32.13695 -31.86582 -28.47602 -26.04947 -25.88470 -24.00042 -21.22500 -19.91582 -17.37486 -16.61472 -15.39537 -15.18632 -14.60578 -14.37577 -13.85677 -13.76798 -13.39917 -13.12449 -12.78146 -12.46854 -12.38367 -11.87372 -11.74409 -11.34134 -10.97823 -10.92528 -10.72858 -10.43972 -10.32259 -10.05886 -9.13672 -8.59395 -8.50806 -8.01007 -6.01597 -4.20783 2.59937 2.72431 3.27733 3.33528 3.34717 3.73403 4.29362 4.35139 4.41293 4.84335 5.09624 5.25961 5.39821 5.53335 5.68676 5.72674 5.77824 5.85633 5.98641 6.12931 6.20132 6.46190 6.62095 6.79501 7.33367 7.50682 7.72317 7.84488 8.17050 8.82758 9.44744 9.60857 11.02370 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.058391 B = 0.006768 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.414746 B = 4136.019241 C = 4357.554813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.008 4.008 3 C 0.227 3.773 4 N -0.443 5.443 5 C 0.013 3.987 6 N -0.445 5.445 7 C -0.007 4.007 8 C 0.243 3.757 9 H 0.054 0.946 10 O -0.554 6.554 11 C -0.578 4.578 12 H 0.053 0.947 13 C 0.081 3.919 14 N -0.857 5.857 15 Si 0.889 3.111 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.020 3.980 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.092 0.908 23 H 0.096 0.904 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.042 0.958 27 H 0.342 0.658 28 H 0.261 0.739 29 H 0.073 0.927 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 8.606 4.820 10.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.012 4.012 3 C -0.091 4.091 4 N -0.117 5.117 5 C -0.118 4.118 6 N -0.167 5.167 7 C -0.135 4.135 8 C 0.185 3.815 9 H 0.072 0.928 10 O -0.355 6.355 11 C -0.616 4.616 12 H 0.072 0.928 13 C -0.125 4.125 14 N -0.493 5.493 15 Si 0.716 3.284 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.110 4.110 20 H 0.084 0.916 21 H 0.080 0.920 22 H 0.111 0.889 23 H 0.114 0.886 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.060 0.940 27 H 0.185 0.815 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.107 9.669 4.082 11.270 hybrid contribution 1.947 -0.544 0.499 2.082 sum -2.160 9.125 4.582 10.436 Atomic orbital electron populations 1.21494 0.89002 1.04461 1.02435 1.19786 0.97414 0.82296 1.01729 1.28996 0.93055 0.94225 0.92846 1.81184 1.09606 1.12119 1.08829 1.23958 1.00227 0.90752 0.96823 1.69129 1.36466 1.09386 1.01714 1.23700 0.89086 0.98386 1.02329 1.19186 0.85781 0.84595 0.91970 0.92810 1.86574 1.44349 1.72707 1.31872 1.21624 1.00098 1.08458 1.31453 0.92829 1.25011 0.95750 0.97400 0.94373 1.70066 1.28486 1.22689 1.28031 0.86747 0.83674 0.79867 0.78125 1.20140 1.21149 1.20231 1.23995 1.00587 0.89708 0.96747 0.91627 0.91968 0.88934 0.88580 0.91270 0.91517 0.94018 0.81515 0.92888 0.90892 0.88279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.19 37.16 0.34 -0.78 16 2 C -0.01 -0.09 1.42 -156.76 -0.22 -0.32 16 3 C 0.23 2.99 14.59 -20.76 -0.30 2.69 16 4 N -0.44 -6.79 18.54 42.15 0.78 -6.01 16 5 C 0.01 0.16 6.81 -7.54 -0.05 0.11 16 6 N -0.45 -7.11 6.01 -244.59 -1.47 -8.58 16 7 C -0.01 -0.13 4.42 -3.82 -0.02 -0.15 16 8 C 0.24 5.91 3.10 -27.88 -0.09 5.83 16 9 H 0.05 1.45 8.14 -51.93 -0.42 1.03 16 10 O -0.55 -13.91 12.59 -35.23 -0.44 -14.35 16 11 C -0.58 -15.42 8.76 -34.44 -0.30 -15.72 16 12 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 13 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 14 N -0.86 -24.98 12.84 55.43 0.71 -24.27 16 15 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C 0.02 0.28 6.80 -7.54 -0.05 0.23 16 20 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 21 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 22 H 0.09 0.97 7.93 -51.93 -0.41 0.56 16 23 H 0.10 1.06 8.11 -51.93 -0.42 0.63 16 24 H 0.07 0.86 7.86 -51.93 -0.41 0.45 16 25 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 26 H 0.04 0.78 7.30 -51.93 -0.38 0.40 16 27 H 0.34 7.66 9.04 45.56 0.41 8.07 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.07 1.03 7.36 -51.93 -0.38 0.65 16 30 H 0.10 1.34 8.12 -51.93 -0.42 0.92 16 LS Contribution 265.59 15.07 4.00 4.00 Total: -1.00 -30.51 265.59 -5.47 -35.98 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -3.24 Total: 3.44 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -0.79 Total: -5.98 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.02 Total: -38.86 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.44 Total: -14.35 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.51 -5.47 -35.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930300752.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.502 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds