Wall clock time and date at job start Sun Mar 29 2020 21:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21278 * 119.99862 * 2 1 4 4 N 1.34773 * 119.99996 * 180.02562 * 2 1 3 5 5 C 1.46501 * 120.00024 * 179.97438 * 4 2 1 6 6 H 1.08996 * 115.49322 * 350.37651 * 5 4 2 7 7 C 1.53000 * 117.44070 * 205.00057 * 5 4 2 8 8 H 1.08996 * 119.54284 * 4.11210 * 7 5 4 9 9 C 1.54387 * 118.12202 * 159.21068 * 7 5 4 10 10 N 1.48150 * 104.61676 * 89.20533 * 9 7 5 11 11 C 1.36942 * 127.83897 * 140.41373 * 10 9 7 12 12 H 1.07997 * 119.99705 * 195.57467 * 11 10 9 13 13 C 1.38808 * 119.99543 * 15.57604 * 11 10 9 14 14 N 1.31623 * 120.00644 * 9.09519 * 13 11 10 15 15 Si 1.86803 * 119.99642 * 189.09560 * 13 11 10 16 16 H 1.48503 * 109.46926 * 89.99983 * 15 13 11 17 17 H 1.48504 * 109.47260 * 210.00031 * 15 13 11 18 18 H 1.48500 * 109.47209 * 330.00194 * 15 13 11 19 19 C 1.48150 * 104.32525 * 320.41585 * 10 9 7 20 20 C 1.54288 * 61.49577 * 251.66758 * 7 5 4 21 21 H 1.09003 * 121.81597 * 109.77022 * 20 7 5 22 22 H 1.08997 * 109.46967 * 239.99632 * 1 2 3 23 23 H 1.09000 * 109.46735 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47329 * 119.99634 * 1 2 3 25 25 H 0.97004 * 119.99678 * 359.97438 * 4 2 1 26 26 H 1.08999 * 110.41056 * 207.98830 * 9 7 5 27 27 H 1.08995 * 110.40577 * 330.42654 * 9 7 5 28 28 H 0.96997 * 120.00218 * 179.97438 * 14 13 11 29 29 H 1.09002 * 110.40708 * 158.37002 * 19 10 9 30 30 H 1.09003 * 110.40529 * 280.68485 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.1150 -0.1971 -0.1655 7 6 4.3508 -2.3977 -0.5755 8 1 3.7589 -3.1961 -1.0229 9 6 5.8157 -2.2470 -1.0391 10 7 6.6222 -2.5455 0.1673 11 6 7.7919 -3.2536 0.2417 12 1 8.1460 -3.6126 1.1968 13 6 8.5225 -3.5099 -0.9104 14 7 8.1922 -2.9259 -2.0428 15 14 9.9746 -4.6836 -0.8537 16 1 9.5072 -6.0635 -1.1413 17 1 10.9783 -4.2789 -1.8706 18 1 10.5927 -4.6416 0.4959 19 6 5.8760 -1.9042 1.2749 20 6 4.3906 -2.1716 0.9502 21 1 3.8397 -2.8107 1.6404 22 1 -0.3633 -0.5139 0.8899 23 1 -0.3633 1.0277 0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 1.6959 -2.0072 -0.0005 26 1 6.0389 -2.9611 -1.8317 27 1 6.0038 -1.2288 -1.3795 28 1 8.7030 -3.1048 -2.8477 29 1 6.1447 -2.3597 2.2281 30 1 6.0751 -0.8328 1.2971 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957987581.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:01 Heat of formation + Delta-G solvation = 20.611759 kcal Electronic energy + Delta-G solvation = -13630.476902 eV Core-core repulsion = 11234.536153 eV Total energy + Delta-G solvation = -2395.940749 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.61904 -38.12528 -34.40873 -32.68338 -30.61484 -29.23363 -27.11867 -25.52151 -22.03610 -20.52296 -20.13879 -19.20185 -16.91843 -16.67991 -16.27474 -15.11076 -14.73189 -14.01725 -13.55143 -13.21734 -12.79263 -12.67697 -12.43359 -12.16951 -11.48534 -11.42623 -10.99524 -10.83553 -10.37609 -10.17965 -10.15601 -9.82495 -9.72599 -9.20852 -8.72020 -8.26078 -6.86893 -5.79778 -3.14254 2.65517 3.21626 3.38688 3.43598 3.45761 4.25114 4.47091 4.78837 5.10106 5.14462 5.24434 5.38516 5.41842 5.57569 5.67819 5.83987 5.94596 6.16899 6.26158 6.52926 6.70874 6.82470 6.91709 7.35230 7.53018 7.61652 7.71239 8.20440 8.31263 9.10795 9.73520 10.50737 11.34690 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.083737 B = 0.006377 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.300146 B = 4389.917441 C = 4482.092972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.510 3.490 3 O -0.547 6.547 4 N -0.698 5.698 5 C 0.093 3.907 6 H 0.132 0.868 7 C -0.176 4.176 8 H 0.100 0.900 9 C 0.184 3.816 10 N -0.594 5.594 11 C -0.228 4.228 12 H 0.077 0.923 13 C -0.005 4.005 14 N -0.916 5.916 15 Si 0.914 3.086 16 H -0.288 1.288 17 H -0.290 1.290 18 H -0.280 1.280 19 C 0.154 3.846 20 C -0.186 4.186 21 H 0.103 0.897 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.399 0.601 26 H 0.091 0.909 27 H 0.026 0.974 28 H 0.255 0.745 29 H 0.051 0.949 30 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.699 0.688 3.386 14.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.297 3.703 3 O -0.424 6.424 4 N -0.347 5.347 5 C -0.013 4.013 6 H 0.150 0.850 7 C -0.198 4.198 8 H 0.118 0.882 9 C 0.058 3.942 10 N -0.317 5.317 11 C -0.356 4.356 12 H 0.095 0.905 13 C -0.203 4.203 14 N -0.562 5.562 15 Si 0.744 3.256 16 H -0.215 1.215 17 H -0.216 1.216 18 H -0.205 1.205 19 C 0.028 3.972 20 C -0.208 4.208 21 H 0.121 0.879 22 H 0.105 0.895 23 H 0.110 0.890 24 H 0.105 0.895 25 H 0.233 0.767 26 H 0.109 0.891 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -13.028 1.363 3.243 13.495 hybrid contribution 0.382 -1.202 -0.027 1.262 sum -12.646 0.160 3.216 13.050 Atomic orbital electron populations 1.21911 0.91815 1.05385 1.04102 1.20774 0.90402 0.83514 0.75626 1.90725 1.70839 1.31396 1.49448 1.45419 1.06430 1.08528 1.74305 1.22490 0.78431 0.96818 1.03544 0.85034 1.24650 1.00387 0.97937 0.96800 0.88160 1.21079 0.82349 0.99606 0.91205 1.45188 1.23780 1.60831 1.01906 1.19009 0.96366 1.25851 0.94334 0.90495 1.24904 0.98678 1.00446 0.96226 1.69900 1.41888 1.44628 0.99773 0.86098 0.81748 0.80518 0.77267 1.21514 1.21622 1.20512 1.21135 0.87421 0.95937 0.92736 1.25009 0.98388 1.03278 0.94104 0.87857 0.89536 0.89047 0.89477 0.76725 0.89088 0.95617 0.93514 0.93018 0.95522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.32 36.01 0.37 -1.05 16 2 C 0.51 7.04 7.94 -10.98 -0.09 6.96 16 3 O -0.55 -10.28 16.65 5.56 0.09 -10.18 16 4 N -0.70 -9.34 5.60 -51.65 -0.29 -9.63 16 5 C 0.09 1.61 6.16 -65.70 -0.40 1.21 16 6 H 0.13 2.61 7.40 -51.93 -0.38 2.22 16 7 C -0.18 -3.36 6.91 -89.22 -0.62 -3.97 16 8 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 9 C 0.18 4.48 5.69 -2.41 -0.01 4.46 16 10 N -0.59 -15.42 3.38 -168.86 -0.57 -15.99 16 11 C -0.23 -6.38 10.35 -15.06 -0.16 -6.54 16 12 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 13 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 14 N -0.92 -27.00 10.86 55.49 0.60 -26.40 16 15 Si 0.91 21.96 29.56 -169.99 -5.03 16.93 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.15 3.33 7.06 -2.41 -0.02 3.31 16 20 C -0.19 -3.38 7.27 -86.99 -0.63 -4.01 16 21 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 22 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 24 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.40 4.02 8.83 -40.82 -0.36 3.66 16 26 H 0.09 2.45 6.51 -51.93 -0.34 2.11 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 258.49 15.07 3.90 3.90 Total: -1.00 -32.79 258.49 -6.95 -39.74 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -4.01 Total: 1.50 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -1.65 Total: 0.12 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.26 Total: -52.01 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.79 -6.95 -39.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957987581.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.354 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds