Wall clock time and date at job start Sun Mar 29 2020 21:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21278 * 119.99862 * 2 1 4 4 N 1.34773 * 119.99996 * 180.02562 * 2 1 3 5 5 C 1.46501 * 120.00024 * 179.97438 * 4 2 1 6 6 H 1.08996 * 115.49322 * 350.37651 * 5 4 2 7 7 C 1.53000 * 117.44070 * 205.00057 * 5 4 2 8 8 H 1.08996 * 119.54284 * 4.11210 * 7 5 4 9 9 C 1.54387 * 118.12202 * 159.21068 * 7 5 4 10 10 N 1.48150 * 104.61676 * 89.20533 * 9 7 5 11 11 C 1.36942 * 127.83897 * 140.41373 * 10 9 7 12 12 H 1.07997 * 119.99705 * 195.57467 * 11 10 9 13 13 C 1.38808 * 119.99543 * 15.57604 * 11 10 9 14 14 N 1.31623 * 120.00644 * 9.09519 * 13 11 10 15 15 Si 1.86803 * 119.99642 * 189.09560 * 13 11 10 16 16 H 1.48503 * 109.46926 * 89.99983 * 15 13 11 17 17 H 1.48504 * 109.47260 * 210.00031 * 15 13 11 18 18 H 1.48500 * 109.47209 * 330.00194 * 15 13 11 19 19 C 1.48150 * 104.32525 * 320.41585 * 10 9 7 20 20 C 1.54288 * 61.49577 * 251.66758 * 7 5 4 21 21 H 1.09003 * 121.81597 * 109.77022 * 20 7 5 22 22 H 1.08997 * 109.46967 * 239.99632 * 1 2 3 23 23 H 1.09000 * 109.46735 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47329 * 119.99634 * 1 2 3 25 25 H 0.97004 * 119.99678 * 359.97438 * 4 2 1 26 26 H 1.08999 * 110.41056 * 207.98830 * 9 7 5 27 27 H 1.08995 * 110.40577 * 330.42654 * 9 7 5 28 28 H 0.96997 * 120.00218 * 179.97438 * 14 13 11 29 29 H 1.09002 * 110.40708 * 158.37002 * 19 10 9 30 30 H 1.09003 * 110.40529 * 280.68485 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.1150 -0.1971 -0.1655 7 6 4.3508 -2.3977 -0.5755 8 1 3.7589 -3.1961 -1.0229 9 6 5.8157 -2.2470 -1.0391 10 7 6.6222 -2.5455 0.1673 11 6 7.7919 -3.2536 0.2417 12 1 8.1460 -3.6126 1.1968 13 6 8.5225 -3.5099 -0.9104 14 7 8.1922 -2.9259 -2.0428 15 14 9.9746 -4.6836 -0.8537 16 1 9.5072 -6.0635 -1.1413 17 1 10.9783 -4.2789 -1.8706 18 1 10.5927 -4.6416 0.4959 19 6 5.8760 -1.9042 1.2749 20 6 4.3906 -2.1716 0.9502 21 1 3.8397 -2.8107 1.6404 22 1 -0.3633 -0.5139 0.8899 23 1 -0.3633 1.0277 0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 1.6959 -2.0072 -0.0005 26 1 6.0389 -2.9611 -1.8317 27 1 6.0038 -1.2288 -1.3795 28 1 8.7030 -3.1048 -2.8477 29 1 6.1447 -2.3597 2.2281 30 1 6.0751 -0.8328 1.2971 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957987581.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:00 Heat of formation + Delta-G solvation = -3.163882 kcal Electronic energy + Delta-G solvation = -13631.507891 eV Core-core repulsion = 11234.536153 eV Total energy + Delta-G solvation = -2396.971738 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.93247 -39.64740 -36.02069 -34.36614 -32.30061 -30.27796 -28.91997 -27.46074 -23.70201 -21.96743 -21.57450 -20.82292 -18.88104 -17.81988 -17.67317 -16.75767 -16.15751 -15.67542 -15.13709 -14.75003 -14.64647 -13.78190 -13.49545 -13.34058 -13.21776 -12.94999 -12.86662 -12.70597 -12.12428 -12.03243 -11.88183 -11.67095 -11.04732 -10.84529 -10.71172 -9.64965 -8.94678 -7.93258 -5.30801 1.46703 1.48807 1.56233 1.58059 2.06683 2.48191 2.79114 3.27324 3.55315 3.82637 3.90313 3.92259 4.12231 4.39313 4.48380 4.56319 4.72187 4.80247 4.88064 4.97443 5.17524 5.28198 5.40042 5.44053 5.54816 5.62445 6.14752 6.58423 6.98380 7.27694 7.65283 8.43901 9.20893 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.083737 B = 0.006377 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.300146 B = 4389.917441 C = 4482.092972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.504 3.496 3 O -0.605 6.605 4 N -0.683 5.683 5 C 0.112 3.888 6 H 0.101 0.899 7 C -0.174 4.174 8 H 0.127 0.873 9 C 0.186 3.814 10 N -0.617 5.617 11 C -0.243 4.243 12 H 0.084 0.916 13 C -0.062 4.062 14 N -0.950 5.950 15 Si 0.984 3.016 16 H -0.282 1.282 17 H -0.295 1.295 18 H -0.267 1.267 19 C 0.146 3.854 20 C -0.168 4.168 21 H 0.139 0.861 22 H 0.117 0.883 23 H 0.090 0.910 24 H 0.114 0.886 25 H 0.421 0.579 26 H 0.060 0.940 27 H -0.007 1.007 28 H 0.251 0.749 29 H 0.065 0.935 30 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.746 -0.631 4.541 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.294 3.706 3 O -0.486 6.486 4 N -0.333 5.333 5 C 0.004 3.996 6 H 0.119 0.881 7 C -0.195 4.195 8 H 0.145 0.855 9 C 0.060 3.940 10 N -0.342 5.342 11 C -0.372 4.372 12 H 0.101 0.899 13 C -0.256 4.256 14 N -0.598 5.598 15 Si 0.811 3.189 16 H -0.209 1.209 17 H -0.221 1.221 18 H -0.191 1.191 19 C 0.020 3.980 20 C -0.189 4.189 21 H 0.156 0.844 22 H 0.135 0.865 23 H 0.109 0.891 24 H 0.133 0.867 25 H 0.258 0.742 26 H 0.078 0.922 27 H 0.011 0.989 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -15.132 0.018 4.429 15.767 hybrid contribution 1.010 -0.709 -0.369 1.288 sum -14.122 -0.691 4.059 14.710 Atomic orbital electron populations 1.21924 0.86682 1.06357 1.06832 1.21895 0.92660 0.82352 0.73714 1.90714 1.72431 1.33451 1.51986 1.45274 1.04367 1.09899 1.73806 1.21999 0.80879 0.94637 1.02118 0.88145 1.24337 0.97718 0.99963 0.97526 0.85541 1.20821 0.85977 0.96696 0.90478 1.45501 1.24025 1.61143 1.03489 1.19429 0.97264 1.25764 0.94711 0.89856 1.25790 1.01667 1.02272 0.95871 1.70107 1.43145 1.46242 1.00283 0.85007 0.78166 0.78206 0.77496 1.20878 1.22144 1.19124 1.21282 0.89447 0.95028 0.92203 1.24929 0.96602 1.03627 0.93766 0.84371 0.86482 0.89071 0.86724 0.74160 0.92197 0.98905 0.94037 0.91707 0.96706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 10.32 71.24 0.74 -1.24 16 2 C 0.50 12.79 7.94 87.66 0.70 13.48 16 3 O -0.60 -22.57 16.65 -3.02 -0.05 -22.62 16 4 N -0.68 -16.32 5.60 -435.72 -2.44 -18.76 16 5 C 0.11 3.73 6.16 46.44 0.29 4.02 16 6 H 0.10 4.09 7.40 -2.39 -0.02 4.08 16 7 C -0.17 -6.47 6.91 -9.89 -0.07 -6.54 16 8 H 0.13 4.05 8.14 -2.39 -0.02 4.03 16 9 C 0.19 9.41 5.69 86.53 0.49 9.90 16 10 N -0.62 -32.65 3.38 -688.14 -2.33 -34.97 16 11 C -0.24 -13.79 10.35 84.03 0.87 -12.92 16 12 H 0.08 4.49 7.84 -2.91 -0.02 4.46 16 13 C -0.06 -3.57 5.40 84.86 0.46 -3.12 16 14 N -0.95 -57.94 10.86 21.65 0.24 -57.70 16 15 Si 0.98 45.58 29.56 68.60 2.03 47.60 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 19 C 0.15 6.26 7.06 86.53 0.61 6.87 16 20 C -0.17 -5.75 7.27 -8.44 -0.06 -5.81 16 21 H 0.14 3.85 8.14 -2.39 -0.02 3.83 16 22 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.09 1.21 8.12 -2.39 -0.02 1.19 16 24 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.42 6.60 8.83 -92.71 -0.82 5.79 16 26 H 0.06 3.37 6.51 -2.39 -0.02 3.35 16 27 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 29 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -74.45 258.49 1.79 -72.66 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.32 Total: 9.15 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 4.02 Total: 4.63 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -4.53 Total: -111.43 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.05 Total: -22.62 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -74.45 1.79 -72.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957987581.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.497 kcal (2) G-P(sol) polarization free energy of solvation -74.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds