Wall clock time and date at job start Sun Mar 29 2020 21:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99875 * 2 1 4 4 H 1.48495 * 109.46964 * 274.98466 * 3 2 1 5 5 H 1.48496 * 109.47273 * 34.98637 * 3 2 1 6 6 H 1.48502 * 109.46988 * 154.98485 * 3 2 1 7 7 C 1.38808 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00288 * 174.95528 * 7 2 1 9 9 N 1.36940 * 119.99773 * 355.22386 * 7 2 1 10 10 C 1.47060 * 136.05913 * 5.76294 * 9 7 2 11 11 C 1.53751 * 87.88866 * 152.95722 * 10 9 7 12 12 N 1.46508 * 114.08849 * 139.77765 * 11 10 9 13 13 C 1.34778 * 119.99738 * 111.56022 * 12 11 10 14 14 O 1.21280 * 120.00203 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99847 * 180.02562 * 13 12 11 16 16 C 1.52995 * 117.49775 * 248.74675 * 15 13 12 17 17 C 1.52999 * 117.49954 * 180.08552 * 15 13 12 18 18 C 1.47066 * 136.05332 * 186.12113 * 9 7 2 19 19 H 0.97004 * 119.99538 * 0.02562 * 1 2 3 20 20 H 1.09005 * 113.46955 * 267.68761 * 10 9 7 21 21 H 1.08999 * 113.47400 * 38.12590 * 10 9 7 22 22 H 1.08998 * 114.57390 * 272.65886 * 11 10 9 23 23 H 0.96996 * 120.00079 * 291.56012 * 12 11 10 24 24 H 1.09000 * 115.54836 * 34.41899 * 15 13 12 25 25 H 1.08996 * 117.50068 * 0.02562 * 16 15 13 26 26 H 1.08999 * 117.49713 * 145.02225 * 16 15 13 27 27 H 1.08999 * 117.49576 * 214.97692 * 17 15 13 28 28 H 1.08999 * 117.50128 * 359.97438 * 17 15 13 29 29 H 1.08997 * 113.47297 * 321.86894 * 18 9 7 30 30 H 1.08999 * 113.46483 * 92.31553 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0871 -1.2040 -0.0828 9 7 1.3291 -2.3860 0.0977 10 6 -0.0828 -2.7971 0.1140 11 6 0.3644 -4.1530 -0.4565 12 7 -0.3337 -5.3043 0.1210 13 6 -1.1869 -6.0236 -0.6348 14 8 -1.3770 -5.7175 -1.7928 15 6 -1.9054 -7.2076 -0.0406 16 6 -1.5157 -8.5976 -0.5473 17 6 -2.8592 -7.9846 -0.9503 18 6 1.6875 -3.8052 0.2396 19 1 -0.4850 0.8401 -0.0004 20 1 -0.5034 -2.8658 1.1173 21 1 -0.7101 -2.2231 -0.5680 22 1 0.4275 -4.1886 -1.5441 23 1 -0.1819 -5.5489 1.0473 24 1 -2.1778 -7.1131 1.0106 25 1 -0.7393 -8.6558 -1.3101 26 1 -1.5320 -9.4177 0.1705 27 1 -3.7586 -8.4016 -0.4975 28 1 -2.9672 -7.6392 -1.9785 29 1 2.5685 -4.0901 -0.3355 30 1 1.7336 -4.1397 1.2760 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030042355.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:39 Heat of formation + Delta-G solvation = 46.291978 kcal Electronic energy + Delta-G solvation = -13517.702422 eV Core-core repulsion = 11122.875251 eV Total energy + Delta-G solvation = -2394.827171 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.76107 -37.97269 -35.88727 -33.48574 -31.84166 -27.66894 -24.82690 -24.60963 -22.57350 -22.40174 -19.97611 -19.44867 -17.26256 -16.74880 -15.80928 -15.17705 -14.82776 -14.31768 -13.96195 -13.83280 -12.66849 -12.52807 -11.99264 -11.61461 -11.53150 -11.42395 -10.92576 -10.84252 -10.66280 -10.54633 -10.37714 -10.07726 -9.51240 -9.44923 -8.83277 -8.36328 -6.93327 -5.80691 -3.14193 2.74410 3.38214 3.41051 3.45509 3.48610 3.87763 4.44629 4.72462 4.83868 4.85015 5.14082 5.28508 5.44731 5.49608 5.57940 5.68968 5.88215 6.01626 6.07656 6.23810 6.39680 6.54883 6.77265 7.20138 7.34210 7.53936 7.91030 7.93901 8.58614 8.99703 9.66252 10.58367 11.37011 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.087398 B = 0.006029 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.298077 B = 4643.409002 C = 4791.838230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.222 4.222 8 H 0.084 0.916 9 N -0.604 5.604 10 C 0.148 3.852 11 C 0.085 3.915 12 N -0.709 5.709 13 C 0.539 3.461 14 O -0.545 6.545 15 C -0.192 4.192 16 C -0.155 4.155 17 C -0.150 4.150 18 C 0.111 3.889 19 H 0.255 0.745 20 H 0.028 0.972 21 H 0.071 0.929 22 H 0.115 0.885 23 H 0.397 0.603 24 H 0.122 0.878 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.045 0.955 30 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.678 -14.754 2.281 15.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.349 4.349 8 H 0.102 0.898 9 N -0.330 5.330 10 C 0.021 3.979 11 C -0.020 4.020 12 N -0.358 5.358 13 C 0.325 3.675 14 O -0.423 6.423 15 C -0.214 4.214 16 C -0.193 4.193 17 C -0.188 4.188 18 C -0.017 4.017 19 H 0.065 0.935 20 H 0.046 0.954 21 H 0.090 0.910 22 H 0.133 0.867 23 H 0.231 0.769 24 H 0.140 0.860 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.126 0.874 29 H 0.063 0.937 30 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.749 -14.118 1.424 14.453 hybrid contribution 0.483 0.880 0.782 1.273 sum -2.265 -13.238 2.206 13.611 Atomic orbital electron populations 1.69866 1.05146 1.25581 1.55631 1.24870 0.95709 0.97711 1.01968 0.86072 0.78651 0.83246 0.77628 1.21429 1.21535 1.20486 1.18906 0.90597 0.81132 1.44280 0.89828 1.45262 1.02739 1.00401 1.84626 1.22519 0.88908 0.88834 0.97687 1.23718 0.93963 0.84920 0.99399 1.45948 1.44257 1.30786 1.14812 1.19615 0.79113 0.82777 0.86040 1.90685 1.64145 1.69968 1.17508 1.22250 1.05869 0.92509 1.00729 1.22917 0.99522 0.93499 1.03350 1.22934 0.93404 1.01448 1.00969 1.22716 0.94990 0.87006 0.96949 0.93487 0.95400 0.91034 0.86701 0.76888 0.86022 0.88329 0.88051 0.88173 0.87433 0.93684 0.94830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.81 11.61 55.49 0.64 -27.16 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 22.26 29.56 -169.99 -5.02 17.23 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.22 -6.33 10.74 -15.06 -0.16 -6.49 16 8 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 9 N -0.60 -15.85 3.78 -184.64 -0.70 -16.55 16 10 C 0.15 3.60 7.15 -8.38 -0.06 3.54 16 11 C 0.09 1.71 4.63 -67.68 -0.31 1.39 16 12 N -0.71 -11.24 5.39 -53.49 -0.29 -11.53 16 13 C 0.54 8.76 7.61 -10.98 -0.08 8.67 16 14 O -0.55 -11.18 15.85 5.56 0.09 -11.09 16 15 C -0.19 -2.23 6.19 -91.77 -0.57 -2.79 16 16 C -0.16 -1.49 10.24 -26.70 -0.27 -1.76 16 17 C -0.15 -1.58 10.05 -26.69 -0.27 -1.85 16 18 C 0.11 2.27 8.45 -8.51 -0.07 2.20 16 19 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 20 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.07 1.98 7.29 -51.93 -0.38 1.61 16 22 H 0.12 2.52 7.45 -51.93 -0.39 2.13 16 23 H 0.40 5.06 8.75 -40.82 -0.36 4.70 16 24 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.11 1.33 7.67 -51.93 -0.40 0.93 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.03 0.64 8.13 -51.93 -0.42 0.21 16 LS Contribution 262.33 15.07 3.95 3.95 Total: -1.00 -33.36 262.33 -7.25 -40.61 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.03 Total: 1.89 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.90 Total: 2.65 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.34 Total: -55.25 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.36 -7.25 -40.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030042355.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.900 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds