Wall clock time and date at job start Sun Mar 29 2020 21:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33206 * 126.02450 * 2 1 4 4 C 1.31545 * 109.77069 * 180.13804 * 3 2 1 5 5 O 1.35203 * 125.48806 * 179.86151 * 4 3 2 6 6 N 1.34992 * 109.03283 * 359.59945 * 4 3 2 7 7 H 0.96999 * 126.54846 * 180.24591 * 6 4 3 8 8 C 1.36848 * 126.02285 * 179.69420 * 2 1 3 9 9 C 1.46256 * 126.83046 * 0.02562 * 8 2 1 10 10 O 1.21771 * 120.00522 * 359.97438 * 9 8 2 11 11 N 1.34779 * 120.00058 * 179.97438 * 9 8 2 12 12 C 1.36906 * 120.00414 * 180.02562 * 11 9 8 13 13 H 1.08001 * 119.99738 * 0.02562 * 12 11 9 14 14 C 1.38985 * 120.00228 * 180.02562 * 12 11 9 15 15 N 1.31412 * 119.99623 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99928 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47465 * 90.00121 * 16 14 12 18 18 H 1.48504 * 109.47041 * 210.00253 * 16 14 12 19 19 H 1.48496 * 109.47199 * 329.99782 * 16 14 12 20 20 H 1.08998 * 109.46849 * 270.30502 * 1 2 3 21 21 H 1.09004 * 109.46436 * 30.30478 * 1 2 3 22 22 H 1.09000 * 109.46861 * 150.30182 * 1 2 3 23 23 H 0.96700 * 114.00205 * 269.69681 * 5 4 3 24 24 H 0.97003 * 119.99483 * 0.02562 * 11 9 8 25 25 H 0.97007 * 119.99588 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2905 1.0773 0.0000 4 6 3.5533 0.7091 -0.0030 5 8 4.6150 1.5463 -0.0065 6 7 3.6188 -0.6392 0.0039 7 1 4.4251 -1.1783 0.0070 8 6 2.3119 -1.1068 0.0059 9 6 1.8807 -2.5043 0.0128 10 8 0.6935 -2.7753 0.0143 11 7 2.7973 -3.4924 0.0177 12 6 2.3938 -4.8006 0.0236 13 1 1.3408 -5.0409 0.0240 14 6 3.3391 -5.8195 0.0291 15 7 4.6202 -5.5270 0.0291 16 14 2.7884 -7.6044 0.0366 17 1 2.6439 -8.0837 -1.3615 18 1 3.8003 -8.4317 0.7414 19 1 1.4832 -7.7168 0.7358 20 1 -0.3633 0.0055 1.0276 21 1 -0.3632 0.8873 -0.5186 22 1 -0.3633 -0.8927 -0.5091 23 1 4.9244 1.7854 -0.8909 24 1 3.7430 -3.2765 0.0169 25 1 5.2800 -6.2381 0.0334 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118311720.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:41 Heat of formation + Delta-G solvation = -53.086128 kcal Electronic energy + Delta-G solvation = -13539.413582 eV Core-core repulsion = 10939.018047 eV Total energy + Delta-G solvation = -2600.395534 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.19898 -39.93197 -38.30582 -36.19547 -34.39610 -33.20070 -31.62772 -28.46880 -26.69755 -23.80411 -22.33781 -20.93815 -20.45848 -19.66586 -18.60974 -17.30726 -16.71110 -16.58481 -15.85231 -15.60786 -14.90593 -14.66013 -14.14659 -13.61045 -13.53290 -13.25484 -12.96743 -12.91467 -12.49859 -12.12855 -11.62476 -11.35231 -11.09225 -10.58613 -10.17028 -9.39732 -8.58153 -6.03277 0.24253 1.38074 1.42885 1.46723 1.55560 1.69290 2.25087 2.36501 2.83173 3.08648 3.20363 3.88538 4.10008 4.36138 4.61647 4.89266 4.99019 5.09421 5.34015 5.56134 5.81241 5.90037 6.41623 6.69966 6.75136 6.98386 7.35757 7.88389 8.59085 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.045925 B = 0.008355 C = 0.007101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.546684 B = 3350.291833 C = 3942.159200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.077 3.923 3 N -0.509 5.509 4 C 0.407 3.593 5 O -0.438 6.438 6 N -0.548 5.548 7 H 0.431 0.569 8 C -0.067 4.067 9 C 0.508 3.492 10 O -0.606 6.606 11 N -0.555 5.555 12 C -0.334 4.334 13 H 0.091 0.909 14 C -0.009 4.009 15 N -0.915 5.915 16 Si 0.999 3.001 17 H -0.269 1.269 18 H -0.271 1.271 19 H -0.269 1.269 20 H 0.076 0.924 21 H 0.087 0.913 22 H 0.075 0.925 23 H 0.429 0.571 24 H 0.393 0.607 25 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.220 7.817 -1.928 8.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.057 4.057 3 N -0.241 5.241 4 C 0.105 3.895 5 O -0.243 6.243 6 N -0.167 5.167 7 H 0.272 0.728 8 C -0.183 4.183 9 C 0.297 3.703 10 O -0.493 6.493 11 N -0.190 5.190 12 C -0.463 4.463 13 H 0.108 0.892 14 C -0.210 4.210 15 N -0.554 5.554 16 Si 0.822 3.178 17 H -0.194 1.194 18 H -0.196 1.196 19 H -0.194 1.194 20 H 0.094 0.906 21 H 0.106 0.894 22 H 0.094 0.906 23 H 0.291 0.709 24 H 0.226 0.774 25 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.404 8.347 -1.334 8.568 hybrid contribution 1.450 -1.672 -0.437 2.256 sum 2.854 6.675 -1.771 7.473 Atomic orbital electron populations 1.20221 0.85435 1.03527 1.03227 1.21122 0.97582 0.85918 1.01044 1.70160 0.99362 1.30401 1.24144 1.20159 0.87665 0.78881 1.02811 1.84795 1.42147 1.60777 1.36550 1.43640 1.08583 1.07977 1.56501 0.72757 1.20945 0.83776 0.94968 1.18572 1.16737 0.86121 0.82922 0.84568 1.90631 1.17066 1.83084 1.58484 1.41794 1.08177 1.05631 1.63359 1.19805 0.94791 0.81816 1.49878 0.89154 1.26149 0.94722 1.04558 0.95558 1.69643 1.00883 1.36020 1.48891 0.84826 0.78200 0.75947 0.78824 1.19410 1.19588 1.19373 0.90558 0.89389 0.90642 0.70918 0.77365 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.24 9.87 71.24 0.70 -1.54 15 2 C 0.08 2.94 7.14 42.03 0.30 3.24 15 3 N -0.51 -17.87 11.22 -301.54 -3.38 -21.25 15 4 C 0.41 12.31 9.43 179.97 1.70 14.01 15 5 O -0.44 -9.49 13.62 -84.83 -1.16 -10.65 15 6 N -0.55 -17.63 6.12 -300.09 -1.84 -19.47 15 7 H 0.43 11.99 8.32 -92.71 -0.77 11.21 15 8 C -0.07 -2.70 7.07 39.80 0.28 -2.42 15 9 C 0.51 24.81 7.72 86.33 0.67 25.48 15 10 O -0.61 -32.85 14.37 -4.58 -0.07 -32.92 15 11 N -0.56 -27.89 5.28 -310.97 -1.64 -29.53 15 12 C -0.33 -18.19 9.68 84.08 0.81 -17.37 15 13 H 0.09 5.19 7.15 -2.91 -0.02 5.17 15 14 C -0.01 -0.45 5.50 84.93 0.47 0.02 15 15 N -0.91 -46.88 13.05 21.67 0.28 -46.59 15 16 Si 1.00 40.79 29.55 68.60 2.03 42.82 15 17 H -0.27 -10.64 7.11 99.48 0.71 -9.93 15 18 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 19 H -0.27 -11.03 7.11 99.48 0.71 -10.32 15 20 H 0.08 2.44 8.14 -2.39 -0.02 2.42 15 21 H 0.09 2.47 8.14 -2.38 -0.02 2.45 15 22 H 0.07 2.84 6.47 -2.39 -0.02 2.82 15 23 H 0.43 4.18 9.06 -74.06 -0.67 3.51 15 24 H 0.39 18.42 7.13 -92.71 -0.66 17.76 15 25 H 0.28 13.47 8.31 -92.70 -0.77 12.70 15 Total: -1.00 -66.53 233.67 -1.67 -68.20 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: -0.83 Total: 27.98 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 4.93 Total: 21.41 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -6.58 Total: -116.85 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -1.22 Total: -43.57 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -66.53 -1.67 -68.20 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118311720.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.118 kcal (2) G-P(sol) polarization free energy of solvation -66.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds