Wall clock time and date at job start Sun Mar 29 2020 21:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37088 * 120.00431 * 2 1 4 4 H 1.07994 * 120.00527 * 204.39739 * 3 2 1 5 5 C 1.38952 * 119.99838 * 24.39477 * 3 2 1 6 6 N 1.31411 * 120.00291 * 12.65642 * 5 3 2 7 7 Si 1.86804 * 119.99981 * 192.65840 * 5 3 2 8 8 H 1.48503 * 109.46958 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47359 * 120.00007 * 7 5 3 10 10 H 1.48506 * 109.46822 * 240.00071 * 7 5 3 11 11 C 1.34782 * 119.99622 * 179.97438 * 2 1 3 12 12 O 1.21289 * 119.99571 * 179.97438 * 11 2 1 13 13 C 1.50693 * 120.00094 * 0.02562 * 11 2 1 14 14 C 1.50701 * 109.47272 * 180.02562 * 13 11 2 15 15 N 1.33242 * 125.52975 * 90.00052 * 14 13 11 16 16 C 1.30832 * 109.83043 * 180.02562 * 15 14 13 17 17 N 1.34430 * 108.07512 * 359.97438 * 16 15 14 18 18 H 0.97004 * 126.81447 * 179.74056 * 17 16 15 19 19 N 1.30720 * 125.52662 * 270.00242 * 14 13 11 20 20 H 1.08997 * 109.47277 * 265.86771 * 1 2 3 21 21 H 1.09001 * 109.46982 * 25.86348 * 1 2 3 22 22 H 1.08999 * 109.47197 * 145.86120 * 1 2 3 23 23 H 0.96996 * 120.00173 * 180.02562 * 6 5 3 24 24 H 1.09004 * 109.47341 * 59.99674 * 13 11 2 25 25 H 1.09006 * 109.47420 * 300.00000 * 13 11 2 26 26 H 1.07998 * 125.95921 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1581 1.2289 -0.3863 5 6 1.5488 2.3368 0.4970 6 7 0.4348 2.2491 1.1884 7 14 2.3236 4.0072 0.1823 8 1 3.5645 3.8350 -0.6150 9 1 1.3683 4.8629 -0.5664 10 1 2.6542 4.6516 1.4787 11 6 2.1388 -1.1673 0.0005 12 8 3.3517 -1.1673 0.0001 13 6 1.3853 -2.4723 0.0005 14 6 2.3645 -3.6178 0.0018 15 7 2.8668 -4.2059 1.0868 16 6 3.6858 -5.1631 0.7338 17 7 3.7229 -5.2062 -0.6093 18 1 4.2461 -5.8121 -1.1572 19 7 2.8589 -4.1956 -1.0614 20 1 -0.3634 -0.0741 1.0250 21 1 -0.3633 0.9247 -0.4483 22 1 -0.3633 -0.8506 -0.5767 23 1 0.0146 3.0517 1.5351 24 1 0.7589 -2.5302 -0.8897 25 1 0.7582 -2.5299 0.8903 26 1 4.2361 -5.8063 1.4045 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118922293.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:14 Heat of formation + Delta-G solvation = 34.621799 kcal Electronic energy + Delta-G solvation = -13508.466206 eV Core-core repulsion = 11009.592635 eV Total energy + Delta-G solvation = -2498.873571 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.99509 -40.26212 -36.68044 -34.25594 -33.57263 -32.58112 -30.12909 -28.00101 -26.22287 -23.69717 -22.22616 -20.36867 -19.14716 -18.88359 -17.96451 -16.77571 -16.40724 -16.09007 -15.84546 -15.56782 -14.50732 -14.03896 -13.82353 -13.33169 -13.09164 -13.06474 -12.90325 -12.63177 -12.27559 -12.10588 -11.08995 -11.00819 -10.98688 -10.76601 -10.29039 -9.65187 -8.32756 -5.97947 0.71636 1.37114 1.41808 1.55821 1.86708 1.94539 2.02392 2.31821 3.08868 3.09905 3.35621 3.75223 4.10954 4.24056 4.45245 4.64384 4.73744 5.07788 5.32655 5.37072 5.41516 5.46269 6.11682 6.35563 6.50044 7.17536 7.18441 7.45987 8.02747 8.70701 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.066125 B = 0.007580 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.337820 B = 3692.850470 C = 3889.365735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.461 5.461 3 C -0.344 4.344 4 H 0.066 0.934 5 C 0.000 4.000 6 N -0.894 5.894 7 Si 0.990 3.010 8 H -0.276 1.276 9 H -0.262 1.262 10 H -0.275 1.275 11 C 0.447 3.553 12 O -0.631 6.631 13 C -0.033 4.033 14 C 0.244 3.756 15 N -0.580 5.580 16 C 0.273 3.727 17 N -0.476 5.476 18 H 0.458 0.542 19 N -0.343 5.343 20 H 0.047 0.953 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.274 0.726 24 H 0.127 0.873 25 H 0.124 0.876 26 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.098 -12.152 -1.780 12.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.179 5.179 3 C -0.472 4.472 4 H 0.084 0.916 5 C -0.202 4.202 6 N -0.533 5.533 7 Si 0.813 3.187 8 H -0.201 1.201 9 H -0.187 1.187 10 H -0.201 1.201 11 C 0.236 3.764 12 O -0.519 6.519 13 C -0.075 4.075 14 C -0.039 4.039 15 N -0.309 5.309 16 C -0.025 4.025 17 N -0.196 5.196 18 H 0.307 0.693 19 N -0.173 5.173 20 H 0.065 0.935 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.084 0.916 24 H 0.145 0.855 25 H 0.142 0.858 26 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 0.220 -11.683 -2.068 11.867 hybrid contribution 0.842 0.452 -0.182 0.973 sum 1.063 -11.231 -2.250 11.503 Atomic orbital electron populations 1.21532 0.78952 1.01205 1.00978 1.43791 1.06959 1.04284 1.62913 1.19592 1.00361 0.86087 1.41181 0.91556 1.26076 0.97059 1.02855 0.94253 1.70060 1.19612 1.30764 1.32836 0.84942 0.78304 0.77237 0.78198 1.20095 1.18708 1.20096 1.20568 0.87755 0.85788 0.82316 1.90478 1.16300 1.87953 1.57159 1.19831 0.94988 0.85967 1.06744 1.23541 0.97566 0.96644 0.86149 1.70308 1.16462 1.12013 1.32120 1.27052 0.95068 0.95540 0.84838 1.47943 1.35965 1.28058 1.07604 0.69342 1.77821 1.11190 1.05241 1.23019 0.93454 0.92164 0.90971 0.91591 0.85521 0.85792 0.70691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.15 8.44 127.77 1.08 6.23 15 2 N -0.46 -24.75 3.01 -658.92 -1.98 -26.73 15 3 C -0.34 -20.32 9.24 84.04 0.78 -19.55 15 4 H 0.07 4.22 7.45 -2.91 -0.02 4.20 15 5 C 0.00 -0.03 5.04 84.93 0.43 0.40 15 6 N -0.89 -48.13 10.83 21.66 0.23 -47.90 15 7 Si 0.99 43.46 29.57 68.60 2.03 45.49 15 8 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 9 H -0.26 -10.71 7.11 99.48 0.71 -10.00 15 10 H -0.28 -11.78 7.11 99.48 0.71 -11.08 15 11 C 0.45 23.45 7.62 87.65 0.67 24.11 15 12 O -0.63 -38.69 15.75 -3.06 -0.05 -38.74 15 13 C -0.03 -1.31 4.93 29.10 0.14 -1.17 15 14 C 0.24 9.67 6.63 138.63 0.92 10.59 15 15 N -0.58 -20.96 11.19 -191.80 -2.15 -23.11 15 16 C 0.27 6.50 13.13 180.36 2.37 8.86 15 17 N -0.48 -11.65 7.45 -60.49 -0.45 -12.10 15 18 H 0.46 6.65 8.96 -213.10 -1.91 4.74 15 19 N -0.34 -12.51 12.80 -51.33 -0.66 -13.16 15 20 H 0.05 2.13 7.83 -2.39 -0.02 2.11 15 21 H 0.06 2.82 6.80 -2.39 -0.02 2.81 15 22 H 0.07 2.50 6.61 -2.39 -0.02 2.48 15 23 H 0.27 13.72 8.31 -92.71 -0.77 12.95 15 24 H 0.13 4.22 7.41 -2.38 -0.02 4.20 15 25 H 0.12 4.41 8.11 -2.38 -0.02 4.39 15 26 H 0.28 2.66 8.06 -2.91 -0.02 2.63 15 Total: -1.00 -81.67 236.49 2.67 -79.00 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -0.69 Total: 7.77 kcal Atomic # 6 Polarization: 23.10 SS G_CDS: 6.38 Total: 29.48 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -5.00 Total: -123.01 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -0.05 Total: -38.74 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -81.67 2.67 -79.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118922293.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.626 kcal (2) G-P(sol) polarization free energy of solvation -81.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds