Wall clock time and date at job start Sun Mar 29 2020 22:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34990 * 126.54564 * 2 1 4 4 O 1.35200 * 125.48148 * 0.22622 * 3 2 1 5 5 N 1.31548 * 109.03215 * 180.25752 * 3 2 1 6 6 C 1.33198 * 109.77117 * 0.02562 * 5 3 2 7 7 C 1.36848 * 107.95296 * 359.97438 * 6 5 3 8 8 C 1.46266 * 126.83201 * 180.02562 * 7 6 5 9 9 O 1.21778 * 119.99756 * 185.02169 * 8 7 6 10 10 N 1.34771 * 119.99866 * 5.01965 * 8 7 6 11 11 C 1.36910 * 120.00031 * 185.11960 * 10 8 7 12 12 H 1.07999 * 119.99798 * 359.97438 * 11 10 8 13 13 C 1.38976 * 120.00450 * 180.02562 * 11 10 8 14 14 N 1.31415 * 120.00570 * 180.02562 * 13 11 10 15 15 Si 1.86811 * 119.99810 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47136 * 89.99738 * 15 13 11 17 17 H 1.48499 * 109.46907 * 210.00196 * 15 13 11 18 18 H 1.48504 * 109.46829 * 329.99617 * 15 13 11 19 19 H 1.08999 * 109.47591 * 264.39125 * 1 2 3 20 20 H 1.09000 * 109.47107 * 24.39717 * 1 2 3 21 21 H 1.09000 * 109.46779 * 144.39150 * 1 2 3 22 22 H 0.96701 * 114.00548 * 89.99444 * 4 3 2 23 23 H 1.08001 * 126.02707 * 180.02562 * 6 5 3 24 24 H 0.96998 * 120.00545 * 5.12527 * 10 8 7 25 25 H 0.97000 * 120.00277 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2688 1.0845 0.0000 4 8 1.8516 2.3705 0.0043 5 7 3.5233 0.6886 -0.0056 6 6 3.5758 -0.6423 -0.0099 7 6 2.2915 -1.1151 -0.0063 8 6 1.8731 -2.5166 -0.0085 9 8 0.6919 -2.7993 -0.0971 10 7 2.7949 -3.4952 0.0876 11 6 2.4152 -4.8062 -0.0197 12 1 1.3770 -5.0562 -0.1808 13 6 3.3655 -5.8153 0.0799 14 7 3.0012 -7.0737 -0.0236 15 14 5.1611 -5.3829 0.3608 16 1 5.4335 -5.3232 1.8193 17 1 6.0231 -6.4195 -0.2619 18 1 5.4539 -4.0623 -0.2520 19 1 -0.3634 -0.1004 1.0227 20 1 -0.3633 0.9359 -0.4245 21 1 -0.3633 -0.8355 -0.5984 22 1 1.7330 2.7426 0.8890 23 1 4.4735 -1.2426 -0.0145 24 1 3.7273 -3.2707 0.2328 25 1 3.6645 -7.7780 0.0463 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118982712.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:29 Heat of formation + Delta-G solvation = -5.618008 kcal Electronic energy + Delta-G solvation = -13637.820349 eV Core-core repulsion = 11039.483187 eV Total energy + Delta-G solvation = -2598.337162 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.85554 -38.25838 -37.11109 -34.45901 -33.56673 -31.89010 -29.08641 -26.83148 -25.08245 -22.26262 -21.30903 -19.49408 -18.60775 -18.36153 -16.60450 -15.89771 -15.49306 -14.98195 -14.32245 -13.99512 -13.44711 -13.39706 -12.85572 -12.49078 -12.41575 -12.35721 -11.99081 -11.30474 -10.69075 -10.13394 -9.94985 -9.76326 -9.51680 -8.79924 -8.38209 -8.13183 -6.50063 -3.96911 1.62912 2.52035 2.93253 3.00213 3.04842 3.09892 3.96944 3.97862 4.05646 4.47793 4.98124 5.14331 5.17619 5.39723 5.60958 5.72250 5.82000 6.26896 6.63306 6.75544 7.38329 7.67391 7.93872 8.04620 8.40560 8.74298 9.21524 9.60985 10.61072 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.051387 B = 0.008931 C = 0.007657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.748872 B = 3134.279951 C = 3656.113142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.432 5.432 3 C 0.363 3.637 4 O -0.442 6.442 5 N -0.486 5.486 6 C 0.011 3.989 7 C -0.026 4.026 8 C 0.507 3.493 9 O -0.585 6.585 10 N -0.556 5.556 11 C -0.302 4.302 12 H 0.125 0.875 13 C 0.047 3.953 14 N -0.865 5.865 15 Si 0.878 3.122 16 H -0.266 1.266 17 H -0.272 1.272 18 H -0.264 1.264 19 H 0.077 0.923 20 H 0.082 0.918 21 H 0.107 0.893 22 H 0.397 0.603 23 H 0.179 0.821 24 H 0.375 0.625 25 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.411 12.690 2.256 12.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.125 5.125 3 C 0.065 3.935 4 O -0.242 6.242 5 N -0.215 5.215 6 C -0.142 4.142 7 C -0.144 4.144 8 C 0.295 3.705 9 O -0.471 6.471 10 N -0.193 5.193 11 C -0.431 4.431 12 H 0.142 0.858 13 C -0.159 4.159 14 N -0.503 5.503 15 Si 0.703 3.297 16 H -0.191 1.191 17 H -0.197 1.197 18 H -0.189 1.189 19 H 0.095 0.905 20 H 0.101 0.899 21 H 0.125 0.875 22 H 0.253 0.747 23 H 0.196 0.804 24 H 0.209 0.791 25 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.144 12.842 1.573 12.939 hybrid contribution 0.632 -0.159 0.706 0.960 sum 0.775 12.683 2.279 12.910 Atomic orbital electron populations 1.22171 0.75581 1.04929 1.04346 1.45524 1.08241 1.05625 1.53116 1.20074 0.84664 0.81150 1.07626 1.84798 1.87188 1.18483 1.33769 1.70124 1.16567 1.13065 1.21724 1.22410 0.95774 0.89980 1.06037 1.21175 0.90434 0.89287 1.13515 1.16030 0.86283 0.81872 0.86359 1.90669 1.16479 1.83101 1.56885 1.41869 1.08236 1.06422 1.62735 1.19472 0.98399 0.78543 1.46643 0.85782 1.25097 0.98963 0.94904 0.96937 1.69613 1.35262 0.98933 1.46485 0.86676 0.84266 0.79170 0.79583 1.19122 1.19721 1.18897 0.90491 0.89905 0.87485 0.74732 0.80412 0.79077 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 10.57 59.85 0.63 1.64 15 2 N -0.43 -7.39 3.20 -122.11 -0.39 -7.79 15 3 C 0.36 5.91 9.01 -89.54 -0.81 5.10 15 4 O -0.44 -5.49 13.44 -17.30 -0.23 -5.72 15 5 N -0.49 -8.71 11.22 -14.58 -0.16 -8.88 15 6 C 0.01 0.20 11.35 -17.46 -0.20 0.00 15 7 C -0.03 -0.52 6.92 -81.98 -0.57 -1.09 15 8 C 0.51 11.80 7.71 -13.04 -0.10 11.70 15 9 O -0.59 -15.26 14.59 5.12 0.07 -15.19 15 10 N -0.56 -13.11 5.06 -12.29 -0.06 -13.18 15 11 C -0.30 -8.21 10.16 -15.01 -0.15 -8.36 15 12 H 0.12 3.82 7.39 -52.49 -0.39 3.44 15 13 C 0.05 1.22 5.50 -17.46 -0.10 1.12 15 14 N -0.86 -24.08 13.96 55.50 0.77 -23.30 15 15 Si 0.88 18.50 27.74 -169.99 -4.72 13.79 15 16 H -0.27 -5.50 7.11 56.52 0.40 -5.09 15 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 18 H -0.26 -5.06 6.52 56.52 0.37 -4.69 15 19 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 20 H 0.08 0.90 8.03 -51.93 -0.42 0.48 15 21 H 0.11 1.74 6.71 -51.93 -0.35 1.39 15 22 H 0.40 2.70 9.06 45.56 0.41 3.12 15 23 H 0.18 2.77 7.49 -52.49 -0.39 2.38 15 24 H 0.38 7.80 4.73 -40.82 -0.19 7.60 15 25 H 0.28 7.11 8.31 -40.82 -0.34 6.77 15 LS Contribution 231.01 15.07 3.48 3.48 Total: -1.00 -32.61 231.01 -3.44 -36.05 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -0.92 Total: 10.61 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -1.29 Total: 10.12 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.16 Total: -53.14 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.16 Total: -20.91 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -4.72 Total: 13.79 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -32.61 -3.44 -36.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118982712.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.435 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds