Wall clock time and date at job start Sun Mar 29 2020 22:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34990 * 126.54564 * 2 1 4 4 O 1.35200 * 125.48148 * 0.22622 * 3 2 1 5 5 N 1.31548 * 109.03215 * 180.25752 * 3 2 1 6 6 C 1.33198 * 109.77117 * 0.02562 * 5 3 2 7 7 C 1.36848 * 107.95296 * 359.97438 * 6 5 3 8 8 C 1.46266 * 126.83201 * 180.02562 * 7 6 5 9 9 O 1.21778 * 119.99756 * 185.02169 * 8 7 6 10 10 N 1.34771 * 119.99866 * 5.01965 * 8 7 6 11 11 C 1.36910 * 120.00031 * 185.11960 * 10 8 7 12 12 H 1.07999 * 119.99798 * 359.97438 * 11 10 8 13 13 C 1.38976 * 120.00450 * 180.02562 * 11 10 8 14 14 N 1.31415 * 120.00570 * 180.02562 * 13 11 10 15 15 Si 1.86811 * 119.99810 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47136 * 89.99738 * 15 13 11 17 17 H 1.48499 * 109.46907 * 210.00196 * 15 13 11 18 18 H 1.48504 * 109.46829 * 329.99617 * 15 13 11 19 19 H 1.08999 * 109.47591 * 264.39125 * 1 2 3 20 20 H 1.09000 * 109.47107 * 24.39717 * 1 2 3 21 21 H 1.09000 * 109.46779 * 144.39150 * 1 2 3 22 22 H 0.96701 * 114.00548 * 89.99444 * 4 3 2 23 23 H 1.08001 * 126.02707 * 180.02562 * 6 5 3 24 24 H 0.96998 * 120.00545 * 5.12527 * 10 8 7 25 25 H 0.97000 * 120.00277 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2688 1.0845 0.0000 4 8 1.8516 2.3705 0.0043 5 7 3.5233 0.6886 -0.0056 6 6 3.5758 -0.6423 -0.0099 7 6 2.2915 -1.1151 -0.0063 8 6 1.8731 -2.5166 -0.0085 9 8 0.6919 -2.7993 -0.0971 10 7 2.7949 -3.4952 0.0876 11 6 2.4152 -4.8062 -0.0197 12 1 1.3770 -5.0562 -0.1808 13 6 3.3655 -5.8153 0.0799 14 7 3.0012 -7.0737 -0.0236 15 14 5.1611 -5.3829 0.3608 16 1 5.4335 -5.3232 1.8193 17 1 6.0231 -6.4195 -0.2619 18 1 5.4539 -4.0623 -0.2520 19 1 -0.3634 -0.1004 1.0227 20 1 -0.3633 0.9359 -0.4245 21 1 -0.3633 -0.8355 -0.5984 22 1 1.7330 2.7426 0.8890 23 1 4.4735 -1.2426 -0.0145 24 1 3.7273 -3.2707 0.2328 25 1 3.6645 -7.7780 0.0463 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118982712.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:29 Heat of formation + Delta-G solvation = -34.462316 kcal Electronic energy + Delta-G solvation = -13639.071133 eV Core-core repulsion = 11039.483187 eV Total energy + Delta-G solvation = -2599.587945 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.21643 -40.06036 -38.26060 -36.27687 -35.01324 -33.85464 -30.60703 -28.05010 -26.93592 -23.86210 -22.57510 -21.31406 -20.36042 -19.57182 -18.04038 -17.50085 -17.05007 -16.57048 -15.72891 -15.58962 -15.05365 -14.98927 -14.49243 -14.26712 -13.70153 -13.60714 -13.12370 -13.00583 -12.45879 -11.98863 -11.60380 -11.32810 -10.83673 -10.65720 -10.34857 -9.55054 -8.47837 -6.06837 0.21795 1.22919 1.33989 1.38993 1.46748 1.63183 2.21039 2.31426 2.75280 2.87878 3.16766 3.78930 3.86773 4.09230 4.30324 4.39830 4.64630 4.99014 5.31991 5.47630 5.64943 5.85791 6.46138 6.61498 6.71278 6.75245 7.24999 7.75555 8.67870 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.051387 B = 0.008931 C = 0.007657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.748872 B = 3134.279951 C = 3656.113142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.434 5.434 3 C 0.393 3.607 4 O -0.436 6.436 5 N -0.507 5.507 6 C 0.038 3.962 7 C -0.069 4.069 8 C 0.518 3.482 9 O -0.622 6.622 10 N -0.558 5.558 11 C -0.328 4.328 12 H 0.066 0.934 13 C -0.003 4.003 14 N -0.918 5.918 15 Si 0.953 3.047 16 H -0.254 1.254 17 H -0.270 1.270 18 H -0.228 1.228 19 H 0.090 0.910 20 H 0.119 0.881 21 H 0.077 0.923 22 H 0.427 0.573 23 H 0.202 0.798 24 H 0.392 0.608 25 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.400 15.647 2.729 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.127 5.127 3 C 0.093 3.907 4 O -0.241 6.241 5 N -0.237 5.237 6 C -0.116 4.116 7 C -0.186 4.186 8 C 0.306 3.694 9 O -0.510 6.510 10 N -0.196 5.196 11 C -0.457 4.457 12 H 0.084 0.916 13 C -0.204 4.204 14 N -0.557 5.557 15 Si 0.772 3.228 16 H -0.178 1.178 17 H -0.194 1.194 18 H -0.151 1.151 19 H 0.108 0.892 20 H 0.138 0.862 21 H 0.096 0.904 22 H 0.288 0.712 23 H 0.219 0.781 24 H 0.228 0.772 25 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.105 15.838 2.066 16.110 hybrid contribution -0.165 -0.837 0.552 1.016 sum 1.940 15.001 2.618 15.350 Atomic orbital electron populations 1.22317 0.74170 1.05655 1.05006 1.45707 1.09199 1.05195 1.52631 1.20247 0.84253 0.82096 1.04055 1.84766 1.86749 1.16174 1.36373 1.70231 1.17342 1.12729 1.23394 1.22831 0.95717 0.90304 1.02758 1.20583 0.91800 0.87973 1.18271 1.16588 0.85619 0.83433 0.83744 1.90646 1.18317 1.84290 1.57765 1.41583 1.09123 1.05048 1.63890 1.19014 0.96433 0.80898 1.49375 0.91634 1.26070 1.04682 0.94105 0.95578 1.69764 1.37552 1.00455 1.47950 0.85526 0.76318 0.80616 0.80313 1.17775 1.19435 1.15105 0.89168 0.86236 0.90377 0.71170 0.78089 0.77156 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.83 10.57 127.77 1.35 3.18 15 2 N -0.43 -13.84 3.20 -651.95 -2.09 -15.93 15 3 C 0.39 11.28 9.01 179.97 1.62 12.90 15 4 O -0.44 -8.73 13.44 -84.80 -1.14 -9.87 15 5 N -0.51 -16.29 11.22 -313.53 -3.52 -19.80 15 6 C 0.04 1.24 11.35 84.16 0.96 2.20 15 7 C -0.07 -2.62 6.92 39.80 0.28 -2.35 15 8 C 0.52 24.37 7.71 86.33 0.67 25.03 15 9 O -0.62 -33.84 14.59 -4.60 -0.07 -33.90 15 10 N -0.56 -26.45 5.06 -310.97 -1.57 -28.02 15 11 C -0.33 -18.67 10.16 84.08 0.85 -17.81 15 12 H 0.07 4.39 7.39 -2.91 -0.02 4.37 15 13 C 0.00 -0.18 5.50 84.93 0.47 0.29 15 14 N -0.92 -53.15 13.96 21.67 0.30 -52.85 15 15 Si 0.95 37.14 27.74 68.60 1.90 39.04 15 16 H -0.25 -9.38 7.11 99.48 0.71 -8.67 15 17 H -0.27 -10.37 7.11 99.48 0.71 -9.66 15 18 H -0.23 -7.48 6.52 99.48 0.65 -6.83 15 19 H 0.09 2.11 8.14 -2.39 -0.02 2.09 15 20 H 0.12 2.20 8.03 -2.39 -0.02 2.18 15 21 H 0.08 2.55 6.71 -2.39 -0.02 2.54 15 22 H 0.43 3.54 9.06 -74.06 -0.67 2.87 15 23 H 0.20 5.42 7.49 -2.91 -0.02 5.40 15 24 H 0.39 15.55 4.73 -92.71 -0.44 15.11 15 25 H 0.28 14.94 8.31 -92.71 -0.77 14.17 15 Total: -1.00 -74.43 231.01 0.09 -74.34 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.09 Total: 23.56 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 6.19 Total: 23.43 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -6.88 Total: -116.60 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -1.21 Total: -43.78 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 1.90 Total: 39.04 kcal Total: -74.43 0.09 -74.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118982712.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.875 kcal (2) G-P(sol) polarization free energy of solvation -74.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds