Wall clock time and date at job start Sun Mar 29 2020 22:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 10 9 14 14 N 1.46500 * 109.47473 * 179.97438 * 13 12 10 15 15 C 1.34597 * 126.43783 * 125.00017 * 14 13 12 16 16 N 1.31072 * 106.67933 * 180.02562 * 15 14 13 17 17 N 1.28839 * 107.98903 * 359.97438 * 16 15 14 18 18 N 1.28743 * 109.40039 * 359.73711 * 17 16 15 19 19 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 20 20 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 21 21 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 22 22 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 23 23 H 1.09002 * 109.47153 * 299.99998 * 13 12 10 24 24 H 1.08998 * 109.47533 * 59.99628 * 13 12 10 25 25 H 1.08006 * 126.66195 * 0.03258 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 6 2.2382 -6.0258 -0.0016 14 7 1.5058 -7.2946 -0.0016 15 6 1.6437 -8.2973 -0.8888 16 7 0.8067 -9.2384 -0.5260 17 7 0.1873 -8.8349 0.5293 18 7 0.6116 -7.6631 0.8523 19 1 -0.4850 0.8401 -0.0004 20 1 0.3535 -2.3906 0.0002 21 1 0.6170 -4.9209 0.8886 22 1 0.6176 -4.9205 -0.8913 23 1 2.8649 -5.9676 -0.8916 24 1 2.8649 -5.9685 0.8883 25 1 2.3141 -8.3218 -1.7353 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119564347.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:58 Heat of formation + Delta-G solvation = 51.217326 kcal Electronic energy + Delta-G solvation = -13153.446782 eV Core-core repulsion = 10589.866936 eV Total energy + Delta-G solvation = -2563.579846 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.081 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.14897 -40.29219 -37.07062 -35.99368 -33.51892 -33.35778 -32.25016 -27.76489 -25.99288 -24.75636 -23.37786 -21.05212 -19.93483 -18.86683 -17.98703 -17.40280 -16.70949 -16.49592 -16.39412 -15.83301 -14.73867 -14.60866 -13.97962 -13.67336 -13.45518 -13.17306 -12.93325 -12.46543 -12.42143 -12.18654 -12.12383 -11.81306 -11.54325 -11.33612 -10.48949 -10.07274 -8.50283 -5.99959 0.31162 1.05553 1.24437 1.37141 1.43413 1.55432 1.96039 2.28371 3.08651 3.17179 3.37590 3.52825 3.70425 3.94855 4.19136 4.37395 4.48663 4.54662 4.73284 4.87032 5.27569 5.39491 5.93934 6.50236 7.06250 7.48511 7.58624 7.99696 8.66663 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.089180 B = 0.005643 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.894820 B = 4961.112739 C = 5163.694640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.568 5.568 10 C 0.447 3.553 11 O -0.627 6.627 12 C -0.132 4.132 13 C 0.142 3.858 14 N -0.302 5.302 15 C 0.182 3.818 16 N -0.342 5.342 17 N -0.112 5.112 18 N -0.115 5.115 19 H 0.278 0.722 20 H 0.397 0.603 21 H 0.099 0.901 22 H 0.106 0.894 23 H 0.150 0.850 24 H 0.111 0.889 25 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.928 -8.739 -3.279 9.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.465 4.465 8 H 0.105 0.895 9 N -0.203 5.203 10 C 0.234 3.766 11 O -0.516 6.516 12 C -0.173 4.173 13 C 0.021 3.979 14 N -0.103 5.103 15 C -0.116 4.116 16 N -0.191 5.191 17 N -0.106 5.106 18 N -0.102 5.102 19 H 0.088 0.912 20 H 0.231 0.769 21 H 0.117 0.883 22 H 0.124 0.876 23 H 0.168 0.832 24 H 0.129 0.871 25 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges 2.582 -9.142 -2.446 9.810 hybrid contribution 0.341 1.434 -0.380 1.522 sum 2.923 -7.708 -2.826 8.715 Atomic orbital electron populations 1.69678 1.07008 1.29478 1.49811 1.26084 0.96471 1.02658 0.96022 0.84916 0.77958 0.76736 0.78711 1.19516 1.19973 1.19414 1.19742 0.92981 0.83738 1.50058 0.89488 1.41964 1.09529 1.04905 1.63883 1.20273 0.87862 0.85581 0.82905 1.90526 1.15203 1.88043 1.57790 1.21581 0.98833 0.90858 1.05991 1.22061 0.92225 0.74820 1.08757 1.48963 1.26442 1.17164 1.17769 1.28704 1.00837 0.83239 0.98809 1.74907 1.09152 1.26141 1.08914 1.78598 1.19944 1.03306 1.08754 1.78853 1.04907 1.10363 1.16051 0.91233 0.76945 0.88251 0.87603 0.83247 0.87120 0.69752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.93 13.05 21.66 0.28 -47.65 15 2 C -0.01 -0.61 5.50 84.92 0.47 -0.15 15 3 Si 0.99 40.78 29.55 68.60 2.03 42.80 15 4 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 5 H -0.27 -10.86 7.11 99.48 0.71 -10.16 15 6 H -0.27 -11.01 7.11 99.48 0.71 -10.30 15 7 C -0.34 -17.81 9.68 84.04 0.81 -17.00 15 8 H 0.09 4.85 7.16 -2.91 -0.02 4.83 15 9 N -0.57 -26.82 5.29 -306.98 -1.62 -28.44 15 10 C 0.45 18.30 7.78 87.66 0.68 18.98 15 11 O -0.63 -29.36 15.56 -3.07 -0.05 -29.40 15 12 C -0.13 -3.70 5.85 29.85 0.17 -3.52 15 13 C 0.14 3.10 5.77 86.38 0.50 3.60 15 14 N -0.30 -6.85 3.44 -351.82 -1.21 -8.05 15 15 C 0.18 3.33 12.79 180.27 2.31 5.64 15 16 N -0.34 -9.19 12.36 -60.29 -0.74 -9.94 15 17 N -0.11 -3.54 13.43 37.01 0.50 -3.04 15 18 N -0.11 -3.40 13.08 37.02 0.48 -2.92 15 19 H 0.28 13.65 8.31 -92.71 -0.77 12.88 15 20 H 0.40 18.18 7.90 -92.71 -0.73 17.45 15 21 H 0.10 2.82 8.14 -2.39 -0.02 2.80 15 22 H 0.11 2.63 8.14 -2.39 -0.02 2.61 15 23 H 0.15 2.49 8.04 -2.39 -0.02 2.47 15 24 H 0.11 2.57 8.10 -2.39 -0.02 2.55 15 25 H 0.29 1.57 8.06 -2.91 -0.02 1.55 15 Total: -1.00 -67.55 238.28 5.10 -62.45 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.50 Total: 16.65 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 4.94 Total: 7.55 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -2.31 Total: -100.05 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.05 Total: -29.40 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Total: -67.55 5.10 -62.45 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119564347.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.664 kcal (2) G-P(sol) polarization free energy of solvation -67.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds