Wall clock time and date at job start Sun Mar 29 2020 21:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33390 * 122.53637 * 2 1 4 4 S 1.75889 * 109.59325 * 179.78163 * 3 2 1 5 5 C 1.75891 * 90.96824 * 0.31430 * 4 3 2 6 6 C 1.50691 * 125.20164 * 179.97438 * 5 4 3 7 7 N 1.46508 * 109.47213 * 269.69678 * 6 5 4 8 8 C 1.46502 * 119.99617 * 270.00048 * 7 6 5 9 9 C 1.36929 * 120.00201 * 89.99661 * 7 6 5 10 10 H 1.07999 * 120.00090 * 336.87754 * 9 7 6 11 11 C 1.38811 * 119.99929 * 156.60049 * 9 7 6 12 12 N 1.31617 * 120.00339 * 156.57652 * 11 9 7 13 13 Si 1.86807 * 120.00003 * 336.57297 * 11 9 7 14 14 H 1.48500 * 109.46808 * 84.85599 * 13 11 9 15 15 H 1.48500 * 109.47148 * 204.85594 * 13 11 9 16 16 H 1.48502 * 109.46863 * 324.85682 * 13 11 9 17 17 C 1.33389 * 109.59041 * 359.68599 * 5 4 3 18 18 H 1.09000 * 109.46602 * 269.97327 * 1 2 3 19 19 H 1.08997 * 109.47522 * 29.97387 * 1 2 3 20 20 H 1.09003 * 109.46895 * 149.97486 * 1 2 3 21 21 H 1.08004 * 125.20327 * 0.06239 * 3 2 1 22 22 H 1.08995 * 109.47460 * 149.69368 * 6 5 4 23 23 H 1.09004 * 109.47685 * 29.69106 * 6 5 4 24 24 H 1.09001 * 109.47230 * 274.45596 * 8 7 6 25 25 H 1.09002 * 109.46972 * 34.45879 * 8 7 6 26 26 H 1.08998 * 109.47036 * 154.45440 * 8 7 6 27 27 H 0.97001 * 120.00519 * 179.97438 * 12 11 9 28 28 H 1.08004 * 122.53249 * 180.26598 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2245 1.1245 0.0000 4 16 3.9387 0.7306 0.0063 5 6 3.5737 -0.9900 -0.0010 6 6 4.5981 -2.0953 -0.0006 7 7 4.9302 -2.4538 -1.3818 8 6 4.1657 -3.4954 -2.0722 9 6 5.9551 -1.8152 -2.0273 10 1 6.2705 -0.8348 -1.7022 11 6 6.5926 -2.4304 -3.0960 12 7 7.2243 -1.7031 -3.9928 13 14 6.5540 -4.2908 -3.2613 14 1 5.3043 -4.7005 -3.9510 15 1 7.7269 -4.7419 -4.0525 16 1 6.5999 -4.9086 -1.9117 17 6 2.2516 -1.1668 -0.0005 18 1 -0.3632 -0.0005 1.0277 19 1 -0.3634 0.8902 -0.5134 20 1 -0.3633 -0.8898 -0.5142 21 1 1.8153 2.1241 0.0010 22 1 4.1923 -2.9666 0.5134 23 1 5.4978 -1.7567 0.5132 24 1 4.5876 -4.4724 -1.8365 25 1 3.1264 -3.4601 -1.7455 26 1 4.2141 -3.3287 -3.1483 27 1 7.6701 -2.1330 -4.7394 28 1 1.7966 -2.1464 -0.0002 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137156942.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:40 Heat of formation + Delta-G solvation = 53.748866 kcal Electronic energy + Delta-G solvation = -11823.784932 eV Core-core repulsion = 9774.315325 eV Total energy + Delta-G solvation = -2049.469607 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.94442 -35.80196 -32.01105 -30.61640 -27.77033 -26.49403 -25.51116 -22.24429 -20.39668 -18.45421 -16.76164 -16.51848 -15.22776 -14.62234 -14.22938 -13.52356 -13.28616 -12.96407 -12.74810 -12.17938 -12.06215 -12.00482 -11.66144 -11.35064 -11.10754 -10.58418 -10.24922 -10.13048 -10.01904 -9.51025 -8.68287 -8.08755 -7.78425 -7.08300 -5.95721 -3.29840 1.55133 2.24111 2.62294 3.16830 3.35472 3.50028 3.52858 4.54985 5.07293 5.27140 5.35716 5.39743 5.61330 5.73775 5.82656 5.93090 6.02391 6.14128 6.25799 6.29843 6.53795 6.69445 6.71813 6.87628 7.03299 7.90559 8.30457 8.91731 9.71613 10.01614 11.19893 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.046222 B = 0.009404 C = 0.008573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.632312 B = 2976.741649 C = 3265.171967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.101 4.101 3 C -0.245 4.245 4 S 0.105 5.895 5 C -0.150 4.150 6 C 0.209 3.791 7 N -0.600 5.600 8 C 0.103 3.897 9 C -0.268 4.268 10 H 0.087 0.913 11 C 0.027 3.973 12 N -0.902 5.902 13 Si 0.887 3.113 14 H -0.287 1.287 15 H -0.305 1.305 16 H -0.278 1.278 17 C -0.159 4.159 18 H 0.063 0.937 19 H 0.060 0.940 20 H 0.062 0.938 21 H 0.153 0.847 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.011 0.989 25 H 0.033 0.967 26 H 0.061 0.939 27 H 0.263 0.737 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.665 1.675 8.575 13.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.380 4.380 4 S 0.370 5.630 5 C -0.271 4.271 6 C 0.080 3.920 7 N -0.322 5.322 8 C -0.042 4.042 9 C -0.396 4.396 10 H 0.105 0.895 11 C -0.172 4.172 12 N -0.545 5.545 13 Si 0.718 3.282 14 H -0.214 1.214 15 H -0.233 1.233 16 H -0.204 1.204 17 C -0.189 4.189 18 H 0.082 0.918 19 H 0.079 0.921 20 H 0.081 0.919 21 H 0.170 0.830 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.028 0.972 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.169 2.527 8.408 12.694 hybrid contribution -1.298 -1.755 -0.385 2.216 sum -10.466 0.772 8.023 13.210 Atomic orbital electron populations 1.20453 0.90729 1.02165 1.01537 1.18824 0.96707 0.92342 1.03570 1.25314 0.96919 1.01641 1.14166 1.84334 1.05055 1.01561 1.72020 1.25963 0.99078 0.97942 1.04069 1.19362 0.93902 0.91647 0.87046 1.44154 1.35684 1.42870 1.09454 1.21420 0.94061 0.90774 0.97965 1.18883 1.09146 0.99430 1.12124 0.89509 1.25138 0.97806 0.97663 0.96582 1.69889 1.37912 1.34873 1.11793 0.87006 0.75793 0.88097 0.77345 1.21372 1.23327 1.20356 1.19825 0.92565 0.98624 1.07899 0.91830 0.92126 0.91888 0.82981 0.92038 0.91406 0.97161 0.94836 0.92029 0.92726 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 10.14 36.01 0.37 -0.69 15 2 C -0.10 -1.57 5.80 -106.25 -0.62 -2.18 15 3 C -0.24 -3.83 10.98 29.04 0.32 -3.51 15 4 S 0.11 1.88 23.33 -107.50 -2.51 -0.62 15 5 C -0.15 -2.81 6.09 -36.01 -0.22 -3.03 15 6 C 0.21 4.18 6.18 -5.19 -0.03 4.15 15 7 N -0.60 -14.46 2.71 -182.50 -0.49 -14.95 15 8 C 0.10 2.29 8.33 59.85 0.50 2.79 15 9 C -0.27 -7.54 10.04 -15.06 -0.15 -7.69 15 10 H 0.09 2.61 8.06 -52.49 -0.42 2.18 15 11 C 0.03 0.80 5.17 -17.43 -0.09 0.71 15 12 N -0.90 -27.87 13.97 55.49 0.78 -27.09 15 13 Si 0.89 22.63 24.04 -169.99 -4.09 18.54 15 14 H -0.29 -7.01 6.37 56.52 0.36 -6.65 15 15 H -0.31 -7.90 7.11 56.52 0.40 -7.50 15 16 H -0.28 -6.99 6.90 56.52 0.39 -6.60 15 17 C -0.16 -2.70 9.85 -41.21 -0.41 -3.10 15 18 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 19 H 0.06 0.64 8.12 -51.93 -0.42 0.22 15 20 H 0.06 0.70 8.13 -51.93 -0.42 0.28 15 21 H 0.15 1.99 8.06 -52.48 -0.42 1.56 15 22 H 0.06 1.08 8.07 -51.93 -0.42 0.66 15 23 H 0.07 1.35 8.04 -51.93 -0.42 0.93 15 24 H 0.01 0.23 5.78 -51.93 -0.30 -0.07 15 25 H 0.03 0.64 8.11 -51.93 -0.42 0.22 15 26 H 0.06 1.48 5.77 -51.93 -0.30 1.19 15 27 H 0.26 7.70 8.31 -40.82 -0.34 7.37 15 28 H 0.13 1.99 8.06 -52.48 -0.42 1.57 15 LS Contribution 249.64 15.07 3.76 3.76 Total: -1.00 -30.88 249.64 -6.46 -37.34 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: -3.58 Total: -4.42 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -0.33 Total: -12.56 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.28 Total: -42.04 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.09 Total: 18.54 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.51 Total: -0.62 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.88 -6.46 -37.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137156942.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.091 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds