Wall clock time and date at job start Sun Mar 29 2020 21:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 120.00083 * 2 1 4 4 H 1.07997 * 120.00290 * 202.57853 * 3 2 1 5 5 C 1.38813 * 119.99825 * 22.57992 * 3 2 1 6 6 N 1.31624 * 119.99786 * 11.16309 * 5 3 2 7 7 Si 1.86797 * 120.00160 * 191.16807 * 5 3 2 8 8 H 1.48494 * 109.47297 * 89.99588 * 7 5 3 9 9 H 1.48506 * 109.47280 * 209.99983 * 7 5 3 10 10 H 1.48504 * 109.46864 * 329.99633 * 7 5 3 11 11 C 1.46503 * 119.99832 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.46537 * 269.98948 * 11 2 1 13 13 C 1.38551 * 120.42430 * 104.98376 * 12 11 2 14 14 C 1.38703 * 118.44948 * 180.02562 * 13 12 11 15 15 C 1.38150 * 119.22396 * 359.97438 * 14 13 12 16 16 N 1.31905 * 120.79420 * 0.02562 * 15 14 13 17 17 C 1.32058 * 121.69208 * 0.02562 * 16 15 14 18 18 F 1.35092 * 119.65213 * 179.97438 * 17 16 15 19 19 H 1.09004 * 109.46695 * 274.23864 * 1 2 3 20 20 H 1.09002 * 109.47471 * 34.23574 * 1 2 3 21 21 H 1.08999 * 109.47390 * 154.24734 * 1 2 3 22 22 H 0.97000 * 119.99724 * 180.02562 * 6 5 3 23 23 H 1.08998 * 109.46720 * 149.99834 * 11 2 1 24 24 H 1.08989 * 109.47237 * 29.99152 * 11 2 1 25 25 H 1.08001 * 120.77602 * 0.04073 * 13 12 11 26 26 H 1.07998 * 120.38899 * 180.02562 * 14 13 12 27 27 H 1.07997 * 119.60215 * 180.28375 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1676 1.2218 -0.3591 5 6 1.5354 2.3420 0.4616 6 7 0.3862 2.2670 1.0989 7 14 2.3396 4.0040 0.1782 8 1 1.8703 4.5673 -1.1131 9 1 1.9731 4.9261 1.2830 10 1 3.8151 3.8397 0.1395 11 6 2.1975 -1.2688 -0.0006 12 6 2.4488 -1.7042 1.4201 13 6 1.7119 -2.7361 1.9785 14 6 1.9768 -3.1031 3.2896 15 6 2.9601 -2.4335 3.9918 16 7 3.6436 -1.4550 3.4302 17 6 3.4187 -1.0774 2.1850 18 9 4.1429 -0.0697 1.6510 19 1 -0.3633 0.0760 1.0249 20 1 -0.3634 0.8496 -0.5782 21 1 -0.3634 -0.9256 -0.4465 22 1 -0.0432 3.0749 1.4211 23 1 3.1498 -1.1382 -0.5144 24 1 1.6084 -2.0281 -0.5146 25 1 0.9491 -3.2431 1.4061 26 1 1.4215 -3.9035 3.7557 27 1 3.1746 -2.7172 5.0115 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138786994.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:46 Heat of formation + Delta-G solvation = 19.178240 kcal Electronic energy + Delta-G solvation = -13899.061771 eV Core-core repulsion = 11379.598555 eV Total energy + Delta-G solvation = -2519.463216 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.05563 -39.42335 -35.75646 -32.64584 -31.24894 -30.05865 -26.33452 -25.69573 -22.96495 -22.51265 -20.61075 -17.32652 -16.89239 -16.41856 -15.32272 -15.25561 -14.67901 -13.83929 -13.55009 -13.24630 -12.98966 -12.50413 -12.43995 -12.17321 -11.59790 -11.04323 -10.88998 -10.67407 -10.49054 -10.01411 -9.91245 -9.35500 -9.15169 -8.57308 -8.23631 -6.85745 -5.77408 -3.20890 1.50798 1.66676 3.39754 3.45859 3.48541 4.09501 4.32196 4.51399 5.10593 5.19480 5.36812 5.39489 5.54643 5.64514 5.90476 6.15110 6.37170 6.43289 6.50632 6.66797 6.72025 7.24298 7.32174 7.66971 7.81386 8.20320 8.33794 9.18215 9.78439 10.25991 11.27353 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.037745 B = 0.011714 C = 0.010377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.642579 B = 2389.744291 C = 2697.511055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.588 5.588 3 C -0.249 4.249 4 H 0.075 0.925 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.276 1.276 11 C 0.184 3.816 12 C -0.157 4.157 13 C -0.058 4.058 14 C -0.192 4.192 15 C 0.107 3.893 16 N -0.524 5.524 17 C 0.325 3.675 18 F -0.101 7.101 19 H 0.028 0.972 20 H 0.049 0.951 21 H -0.001 1.001 22 H 0.253 0.747 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.134 0.866 26 H 0.131 0.869 27 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.626 -10.043 1.413 10.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.308 5.308 3 C -0.379 4.379 4 H 0.093 0.907 5 C -0.196 4.196 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.201 1.201 11 C 0.056 3.944 12 C -0.165 4.165 13 C -0.084 4.084 14 C -0.213 4.213 15 C -0.050 4.050 16 N -0.239 5.239 17 C 0.171 3.829 18 F -0.080 7.080 19 H 0.046 0.954 20 H 0.068 0.932 21 H 0.017 0.983 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.151 0.849 26 H 0.149 0.851 27 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.154 -9.371 1.868 9.796 hybrid contribution -0.254 0.803 -0.256 0.880 sum 1.900 -8.569 1.612 8.924 Atomic orbital electron populations 1.20861 0.82018 0.95893 0.99440 1.44256 1.02143 1.00309 1.84102 1.19333 0.98475 0.84756 1.35289 0.90726 1.25097 0.97621 0.98878 0.97959 1.70072 1.17791 1.27350 1.39751 0.86198 0.79192 0.83663 0.77284 1.21349 1.21676 1.20130 1.19938 0.97149 0.89065 0.88272 1.22069 0.95172 0.95738 1.03535 1.21303 0.97505 0.94922 0.94717 1.21979 1.00791 1.02735 0.95753 1.22204 0.92470 0.90988 0.99327 1.66915 1.29745 1.16122 1.11101 1.17949 0.90045 0.86610 0.88311 1.91644 1.75698 1.56408 1.84202 0.95367 0.93180 0.98251 0.93640 0.92191 0.92582 0.84857 0.85075 0.82864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 9.01 59.85 0.54 4.49 15 2 N -0.59 -14.77 2.91 -182.50 -0.53 -15.30 15 3 C -0.25 -6.89 8.31 -15.06 -0.13 -7.01 15 4 H 0.07 2.05 7.68 -52.49 -0.40 1.65 15 5 C 0.00 0.09 5.13 -17.43 -0.09 0.00 15 6 N -0.91 -26.70 10.59 55.49 0.59 -26.11 15 7 Si 0.91 22.45 29.57 -169.99 -5.03 17.43 15 8 H -0.29 -6.97 7.11 56.52 0.40 -6.56 15 9 H -0.29 -7.28 7.11 56.52 0.40 -6.88 15 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 11 C 0.18 3.78 5.59 -5.19 -0.03 3.75 15 12 C -0.16 -3.15 5.49 -104.40 -0.57 -3.72 15 13 C -0.06 -0.94 9.81 -39.29 -0.39 -1.33 15 14 C -0.19 -2.79 10.11 -39.44 -0.40 -3.19 15 15 C 0.11 1.72 11.18 -17.55 -0.20 1.53 15 16 N -0.52 -10.71 10.37 -13.60 -0.14 -10.85 15 17 C 0.33 7.17 8.34 -17.35 -0.14 7.02 15 18 F -0.10 -2.42 15.27 2.25 0.03 -2.38 15 19 H 0.03 0.75 7.41 -51.93 -0.38 0.37 15 20 H 0.05 1.31 7.20 -51.93 -0.37 0.93 15 21 H 0.00 -0.02 7.84 -51.93 -0.41 -0.43 15 22 H 0.25 7.27 8.31 -40.82 -0.34 6.93 15 23 H 0.06 1.22 7.98 -51.93 -0.41 0.80 15 24 H 0.06 0.98 7.72 -51.94 -0.40 0.58 15 25 H 0.13 1.81 8.05 -52.49 -0.42 1.39 15 26 H 0.13 1.40 8.06 -52.49 -0.42 0.98 15 27 H 0.15 1.87 8.06 -52.49 -0.42 1.45 15 LS Contribution 241.29 15.07 3.64 3.64 Total: -1.00 -31.57 241.29 -5.63 -37.20 By element: Atomic # 1 Polarization: -2.36 SS G_CDS: -2.79 Total: -5.14 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -1.40 Total: 1.53 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.08 Total: -52.26 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.03 Total: -2.38 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.57 -5.63 -37.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138786994.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.374 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds