Wall clock time and date at job start Sun Mar 29 2020 21:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 120.00083 * 2 1 4 4 H 1.07997 * 120.00290 * 202.57853 * 3 2 1 5 5 C 1.38813 * 119.99825 * 22.57992 * 3 2 1 6 6 N 1.31624 * 119.99786 * 11.16309 * 5 3 2 7 7 Si 1.86797 * 120.00160 * 191.16807 * 5 3 2 8 8 H 1.48494 * 109.47297 * 89.99588 * 7 5 3 9 9 H 1.48506 * 109.47280 * 209.99983 * 7 5 3 10 10 H 1.48504 * 109.46864 * 329.99633 * 7 5 3 11 11 C 1.46503 * 119.99832 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.46537 * 269.98948 * 11 2 1 13 13 C 1.38551 * 120.42430 * 104.98376 * 12 11 2 14 14 C 1.38703 * 118.44948 * 180.02562 * 13 12 11 15 15 C 1.38150 * 119.22396 * 359.97438 * 14 13 12 16 16 N 1.31905 * 120.79420 * 0.02562 * 15 14 13 17 17 C 1.32058 * 121.69208 * 0.02562 * 16 15 14 18 18 F 1.35092 * 119.65213 * 179.97438 * 17 16 15 19 19 H 1.09004 * 109.46695 * 274.23864 * 1 2 3 20 20 H 1.09002 * 109.47471 * 34.23574 * 1 2 3 21 21 H 1.08999 * 109.47390 * 154.24734 * 1 2 3 22 22 H 0.97000 * 119.99724 * 180.02562 * 6 5 3 23 23 H 1.08998 * 109.46720 * 149.99834 * 11 2 1 24 24 H 1.08989 * 109.47237 * 29.99152 * 11 2 1 25 25 H 1.08001 * 120.77602 * 0.04073 * 13 12 11 26 26 H 1.07998 * 120.38899 * 180.02562 * 14 13 12 27 27 H 1.07997 * 119.60215 * 180.28375 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1676 1.2218 -0.3591 5 6 1.5354 2.3420 0.4616 6 7 0.3862 2.2670 1.0989 7 14 2.3396 4.0040 0.1782 8 1 1.8703 4.5673 -1.1131 9 1 1.9731 4.9261 1.2830 10 1 3.8151 3.8397 0.1395 11 6 2.1975 -1.2688 -0.0006 12 6 2.4488 -1.7042 1.4201 13 6 1.7119 -2.7361 1.9785 14 6 1.9768 -3.1031 3.2896 15 6 2.9601 -2.4335 3.9918 16 7 3.6436 -1.4550 3.4302 17 6 3.4187 -1.0774 2.1850 18 9 4.1429 -0.0697 1.6510 19 1 -0.3633 0.0760 1.0249 20 1 -0.3634 0.8496 -0.5782 21 1 -0.3634 -0.9256 -0.4465 22 1 -0.0432 3.0749 1.4211 23 1 3.1498 -1.1382 -0.5144 24 1 1.6084 -2.0281 -0.5146 25 1 0.9491 -3.2431 1.4061 26 1 1.4215 -3.9035 3.7557 27 1 3.1746 -2.7172 5.0115 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138786994.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:46 Heat of formation + Delta-G solvation = -1.811301 kcal Electronic energy + Delta-G solvation = -13899.971946 eV Core-core repulsion = 11379.598555 eV Total energy + Delta-G solvation = -2520.373391 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.73498 -40.82321 -37.58751 -34.32644 -32.86802 -31.68016 -28.10742 -27.57719 -24.37935 -24.17681 -22.31363 -18.83461 -18.80450 -17.98936 -17.08510 -16.80802 -16.29993 -15.49231 -15.36592 -15.07369 -14.47501 -14.12744 -13.93334 -13.73560 -13.35147 -12.87800 -12.70938 -12.48883 -12.34449 -12.03701 -11.86614 -10.75808 -10.69803 -10.51297 -9.68242 -8.85117 -7.86717 -5.32869 0.12373 0.32329 1.41934 1.43378 1.51891 2.47892 2.72281 2.92021 3.29211 3.74905 3.82575 4.01076 4.10501 4.18194 4.57759 4.80896 4.85675 4.89830 5.00800 5.15177 5.29478 5.35394 5.62316 5.72273 5.85641 6.30034 6.82442 7.13100 7.82112 8.22827 9.16346 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.037745 B = 0.011714 C = 0.010377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.642579 B = 2389.744291 C = 2697.511055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.607 5.607 3 C -0.247 4.247 4 H 0.067 0.933 5 C -0.052 4.052 6 N -0.937 5.937 7 Si 0.960 3.040 8 H -0.279 1.279 9 H -0.296 1.296 10 H -0.274 1.274 11 C 0.184 3.816 12 C -0.175 4.175 13 C -0.052 4.052 14 C -0.172 4.172 15 C 0.106 3.894 16 N -0.555 5.555 17 C 0.281 3.719 18 F -0.129 7.129 19 H -0.001 1.001 20 H 0.020 0.980 21 H 0.042 0.958 22 H 0.246 0.754 23 H 0.052 0.948 24 H 0.093 0.907 25 H 0.170 0.830 26 H 0.184 0.816 27 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.090 -12.569 2.059 12.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.329 5.329 3 C -0.378 4.378 4 H 0.084 0.916 5 C -0.247 4.247 6 N -0.584 5.584 7 Si 0.788 3.212 8 H -0.205 1.205 9 H -0.223 1.223 10 H -0.199 1.199 11 C 0.057 3.943 12 C -0.182 4.182 13 C -0.078 4.078 14 C -0.191 4.191 15 C -0.051 4.051 16 N -0.271 5.271 17 C 0.128 3.872 18 F -0.108 7.108 19 H 0.017 0.983 20 H 0.039 0.961 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.111 0.889 25 H 0.187 0.813 26 H 0.202 0.798 27 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 1.652 -11.937 2.505 12.309 hybrid contribution -0.038 1.306 -0.357 1.354 sum 1.614 -10.632 2.148 10.966 Atomic orbital electron populations 1.20596 0.81907 0.96698 0.97501 1.44343 1.02487 1.01124 1.84918 1.19459 0.97959 0.86288 1.34068 0.91565 1.25727 0.98477 1.01700 0.98799 1.70220 1.19129 1.27303 1.41734 0.85366 0.78366 0.80350 0.77092 1.20502 1.22287 1.19945 1.20025 0.96987 0.88055 0.89236 1.22014 0.96050 0.97613 1.02527 1.21820 0.96760 0.93395 0.95814 1.22555 0.99321 1.02544 0.94682 1.23107 0.91687 0.89317 1.00964 1.66918 1.31363 1.18011 1.10778 1.18373 0.91727 0.87419 0.89663 1.91556 1.76578 1.57912 1.84757 0.98258 0.96131 0.93976 0.94431 0.92929 0.88912 0.81274 0.79831 0.78822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.58 9.01 127.77 1.15 9.73 15 2 N -0.61 -30.43 2.91 -731.32 -2.13 -32.56 15 3 C -0.25 -13.97 8.31 84.03 0.70 -13.27 15 4 H 0.07 3.76 7.68 -2.91 -0.02 3.74 15 5 C -0.05 -3.04 5.13 84.86 0.44 -2.60 15 6 N -0.94 -56.83 10.59 21.65 0.23 -56.60 15 7 Si 0.96 47.39 29.57 68.60 2.03 49.42 15 8 H -0.28 -13.23 7.11 99.48 0.71 -12.52 15 9 H -0.30 -14.75 7.11 99.48 0.71 -14.04 15 10 H -0.27 -13.27 7.11 99.48 0.71 -12.56 15 11 C 0.18 7.31 5.59 85.63 0.48 7.79 15 12 C -0.18 -6.74 5.49 -19.72 -0.11 -6.85 15 13 C -0.05 -1.46 9.81 22.46 0.22 -1.24 15 14 C -0.17 -4.07 10.11 22.36 0.23 -3.84 15 15 C 0.11 3.02 11.18 84.66 0.95 3.97 15 16 N -0.56 -22.12 10.37 -196.93 -2.04 -24.16 15 17 C 0.28 12.40 8.34 84.73 0.71 13.11 15 18 F -0.13 -6.44 15.27 44.97 0.69 -5.76 15 19 H 0.00 -0.05 7.41 -2.38 -0.02 -0.07 15 20 H 0.02 1.07 7.20 -2.39 -0.02 1.05 15 21 H 0.04 1.63 7.84 -2.39 -0.02 1.61 15 22 H 0.25 14.61 8.31 -92.71 -0.77 13.84 15 23 H 0.05 2.13 7.98 -2.39 -0.02 2.11 15 24 H 0.09 2.94 7.72 -2.39 -0.02 2.92 15 25 H 0.17 3.57 8.05 -2.91 -0.02 3.54 15 26 H 0.18 2.50 8.06 -2.91 -0.02 2.48 15 27 H 0.20 3.77 8.06 -2.91 -0.02 3.74 15 Total: -1.00 -71.72 241.29 4.70 -67.02 By element: Atomic # 1 Polarization: -5.32 SS G_CDS: 1.17 Total: -4.15 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 4.75 Total: 6.79 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -3.94 Total: -113.32 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.69 Total: -5.76 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -71.72 4.70 -67.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138786994.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.210 kcal (2) G-P(sol) polarization free energy of solvation -71.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds