Wall clock time and date at job start Sun Mar 29 2020 21:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46898 * 109.47092 * 2 1 4 4 C 1.46897 * 111.00269 * 288.03396 * 3 2 1 5 5 C 1.50701 * 109.47396 * 160.36385 * 4 3 2 6 6 H 1.08002 * 119.99973 * 4.90151 * 5 4 3 7 7 C 1.37873 * 119.99807 * 184.89824 * 5 4 3 8 8 N 1.31520 * 119.99923 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00563 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47119 * 89.99556 * 9 7 5 11 11 H 1.48493 * 109.47450 * 209.99974 * 9 7 5 12 12 H 1.48501 * 109.46588 * 329.99992 * 9 7 5 13 13 C 1.46902 * 110.99948 * 164.08026 * 3 2 1 14 14 C 1.50700 * 109.47304 * 293.95435 * 13 3 2 15 15 C 1.34333 * 126.44440 * 89.99572 * 14 13 3 16 16 N 1.34474 * 107.66735 * 180.02562 * 15 14 13 17 17 C 1.30254 * 108.70372 * 0.02562 * 16 15 14 18 18 O 1.33968 * 108.76131 * 0.22229 * 17 16 15 19 19 H 1.09004 * 109.46998 * 179.45701 * 1 2 3 20 20 H 1.09006 * 109.47189 * 299.45893 * 1 2 3 21 21 H 1.08997 * 109.47265 * 59.45764 * 1 2 3 22 22 H 1.08999 * 109.47278 * 240.00362 * 2 1 3 23 23 H 1.09000 * 109.47231 * 119.99982 * 2 1 3 24 24 H 1.08999 * 109.47009 * 280.36468 * 4 3 2 25 25 H 1.08998 * 109.46980 * 40.35924 * 4 3 2 26 26 H 0.96995 * 120.00552 * 180.02562 * 8 7 5 27 27 H 1.09008 * 109.47185 * 173.95682 * 13 3 2 28 28 H 1.08997 * 109.47404 * 53.95448 * 13 3 2 29 29 H 1.07997 * 126.15977 * 0.06316 * 15 14 13 30 30 H 1.08002 * 125.62033 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7948 2.0229 -1.3040 5 6 1.8463 3.5207 -1.1461 6 1 2.1059 3.9545 -0.1917 7 6 1.5621 4.3372 -2.2201 8 7 1.6065 5.6444 -2.0822 9 14 1.1124 3.5871 -3.8707 10 1 -0.3585 3.3968 -3.9437 11 1 1.5490 4.4943 -4.9622 12 1 1.7894 2.2736 -4.0182 13 6 3.4385 1.4417 0.3762 14 6 3.5959 1.0058 1.8101 15 6 3.8061 -0.2478 2.2446 16 7 3.8877 -0.2065 3.5863 17 6 3.7336 1.0267 3.9763 18 8 3.5458 1.7994 2.8981 19 1 -0.3633 -1.0277 -0.0097 20 1 -0.3634 0.5054 0.8948 21 1 -0.3633 0.5222 -0.8850 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.5686 1.7043 -2.0025 25 1 0.8170 1.7313 -1.6874 26 1 1.4062 6.2189 -2.8376 27 1 3.8034 2.4628 0.2647 28 1 4.0126 0.7781 -0.2703 29 1 3.8944 -1.1297 1.6275 30 1 3.7502 1.3693 5.0004 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140931306.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:50 Heat of formation + Delta-G solvation = 30.941960 kcal Electronic energy + Delta-G solvation = -13859.475862 eV Core-core repulsion = 11463.983064 eV Total energy + Delta-G solvation = -2395.492798 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.04162 -37.30633 -34.42942 -32.65489 -31.45045 -29.95794 -27.44372 -24.90121 -22.72303 -22.12594 -21.25357 -19.84555 -17.30825 -16.93676 -16.34879 -15.22417 -14.88032 -14.38784 -13.84929 -13.69846 -13.58874 -13.08730 -12.46602 -11.99893 -11.80072 -11.41496 -11.20472 -11.11752 -10.89880 -10.56169 -10.39343 -10.11489 -9.92499 -9.39653 -8.62625 -8.56965 -7.54464 -6.08997 -4.06902 1.73808 2.89824 3.06796 3.24640 3.32719 3.33115 4.37471 4.43142 4.67616 5.15294 5.22955 5.29456 5.48845 5.51744 5.74552 5.87518 5.95202 6.08140 6.15028 6.35471 6.41613 6.52764 6.64195 6.73011 6.80267 7.53540 7.76009 7.85532 7.92911 8.59297 9.00659 9.51909 11.04154 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.040911 B = 0.008650 C = 0.007671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.256481 B = 3236.218870 C = 3649.129806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.040 3.960 3 N -0.523 5.523 4 C 0.163 3.837 5 C -0.511 4.511 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.898 5.898 9 Si 0.873 3.127 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.135 3.865 14 C -0.002 4.002 15 C -0.060 4.060 16 N -0.492 5.492 17 C 0.153 3.847 18 O -0.191 6.191 19 H 0.048 0.952 20 H 0.059 0.941 21 H 0.058 0.942 22 H 0.026 0.974 23 H 0.066 0.934 24 H -0.008 1.008 25 H 0.032 0.968 26 H 0.264 0.736 27 H 0.107 0.893 28 H 0.060 0.940 29 H 0.177 0.823 30 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 -10.462 5.786 12.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 N -0.248 5.248 4 C 0.037 3.963 5 C -0.549 4.549 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.007 3.993 14 C -0.056 4.056 15 C -0.199 4.199 16 N -0.221 5.221 17 C -0.074 4.074 18 O -0.075 6.075 19 H 0.067 0.933 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.044 0.956 23 H 0.084 0.916 24 H 0.009 0.991 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.125 0.875 28 H 0.078 0.922 29 H 0.194 0.806 30 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 2.500 -10.467 6.427 12.535 hybrid contribution 0.016 -0.190 -1.836 1.846 sum 2.516 -10.657 4.591 11.874 Atomic orbital electron populations 1.21735 0.95174 1.00250 1.02939 1.22186 0.96469 0.90411 0.99735 1.61950 1.14354 1.14906 1.33636 1.20243 0.95773 0.96020 0.84233 1.21032 1.46964 0.88095 0.98856 0.90099 1.24896 0.95105 0.94710 0.98532 1.69891 1.49458 1.02857 1.31485 0.86894 0.79274 0.79460 0.84320 1.20104 1.21119 1.19303 1.20472 0.91297 1.03691 0.83829 1.23755 1.02539 0.89610 0.89725 1.22953 1.08695 0.97492 0.90784 1.70361 1.18419 1.21203 1.12143 1.27932 1.01460 0.84567 0.93397 1.84510 1.67524 1.40201 1.15301 0.93258 0.92157 0.92268 0.95596 0.91558 0.99061 0.94986 0.92603 0.87460 0.92178 0.80570 0.73976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.98 37.15 0.37 -1.94 16 2 C 0.04 0.68 5.55 -3.83 -0.02 0.66 16 3 N -0.52 -10.66 4.37 -237.52 -1.04 -11.70 16 4 C 0.16 3.80 3.65 -4.98 -0.02 3.78 16 5 C -0.51 -14.21 9.17 -34.44 -0.32 -14.53 16 6 H 0.08 2.48 7.89 -52.49 -0.41 2.06 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 9 Si 0.87 20.99 27.37 -169.99 -4.65 16.33 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.16 6.69 56.52 0.38 -5.78 16 13 C 0.14 2.46 5.34 -4.97 -0.03 2.43 16 14 C 0.00 -0.03 6.33 -35.69 -0.23 -0.25 16 15 C -0.06 -0.92 10.15 -17.77 -0.18 -1.10 16 16 N -0.49 -7.58 11.29 -14.97 -0.17 -7.75 16 17 C 0.15 2.08 13.23 52.09 0.69 2.77 16 18 O -0.19 -3.23 10.78 5.35 0.06 -3.18 16 19 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 21 H 0.06 1.02 6.52 -51.93 -0.34 0.68 16 22 H 0.03 0.41 8.05 -51.93 -0.42 0.00 16 23 H 0.07 1.04 5.53 -51.93 -0.29 0.75 16 24 H -0.01 -0.19 7.40 -51.93 -0.38 -0.58 16 25 H 0.03 0.75 5.40 -51.93 -0.28 0.47 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.11 2.16 7.32 -51.92 -0.38 1.78 16 28 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 29 H 0.18 2.26 7.95 -52.49 -0.42 1.85 16 30 H 0.24 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 254.37 15.07 3.83 3.83 Total: -1.00 -31.63 254.37 -4.79 -36.42 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -3.77 Total: -1.26 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 0.18 Total: -6.31 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.43 Total: -45.84 kcal Atomic # 8 Polarization: -3.23 SS G_CDS: 0.06 Total: -3.18 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.65 Total: 16.33 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.63 -4.79 -36.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140931306.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.359 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds