Wall clock time and date at job start Sun Mar 29 2020 21:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46898 * 109.47092 * 2 1 4 4 C 1.46897 * 111.00269 * 288.03396 * 3 2 1 5 5 C 1.50701 * 109.47396 * 160.36385 * 4 3 2 6 6 H 1.08002 * 119.99973 * 4.90151 * 5 4 3 7 7 C 1.37873 * 119.99807 * 184.89824 * 5 4 3 8 8 N 1.31520 * 119.99923 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00563 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47119 * 89.99556 * 9 7 5 11 11 H 1.48493 * 109.47450 * 209.99974 * 9 7 5 12 12 H 1.48501 * 109.46588 * 329.99992 * 9 7 5 13 13 C 1.46902 * 110.99948 * 164.08026 * 3 2 1 14 14 C 1.50700 * 109.47304 * 293.95435 * 13 3 2 15 15 C 1.34333 * 126.44440 * 89.99572 * 14 13 3 16 16 N 1.34474 * 107.66735 * 180.02562 * 15 14 13 17 17 C 1.30254 * 108.70372 * 0.02562 * 16 15 14 18 18 O 1.33968 * 108.76131 * 0.22229 * 17 16 15 19 19 H 1.09004 * 109.46998 * 179.45701 * 1 2 3 20 20 H 1.09006 * 109.47189 * 299.45893 * 1 2 3 21 21 H 1.08997 * 109.47265 * 59.45764 * 1 2 3 22 22 H 1.08999 * 109.47278 * 240.00362 * 2 1 3 23 23 H 1.09000 * 109.47231 * 119.99982 * 2 1 3 24 24 H 1.08999 * 109.47009 * 280.36468 * 4 3 2 25 25 H 1.08998 * 109.46980 * 40.35924 * 4 3 2 26 26 H 0.96995 * 120.00552 * 180.02562 * 8 7 5 27 27 H 1.09008 * 109.47185 * 173.95682 * 13 3 2 28 28 H 1.08997 * 109.47404 * 53.95448 * 13 3 2 29 29 H 1.07997 * 126.15977 * 0.06316 * 15 14 13 30 30 H 1.08002 * 125.62033 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7948 2.0229 -1.3040 5 6 1.8463 3.5207 -1.1461 6 1 2.1059 3.9545 -0.1917 7 6 1.5621 4.3372 -2.2201 8 7 1.6065 5.6444 -2.0822 9 14 1.1124 3.5871 -3.8707 10 1 -0.3585 3.3968 -3.9437 11 1 1.5490 4.4943 -4.9622 12 1 1.7894 2.2736 -4.0182 13 6 3.4385 1.4417 0.3762 14 6 3.5959 1.0058 1.8101 15 6 3.8061 -0.2478 2.2446 16 7 3.8877 -0.2065 3.5863 17 6 3.7336 1.0267 3.9763 18 8 3.5458 1.7994 2.8981 19 1 -0.3633 -1.0277 -0.0097 20 1 -0.3634 0.5054 0.8948 21 1 -0.3633 0.5222 -0.8850 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.5686 1.7043 -2.0025 25 1 0.8170 1.7313 -1.6874 26 1 1.4062 6.2189 -2.8376 27 1 3.8034 2.4628 0.2647 28 1 4.0126 0.7781 -0.2703 29 1 3.8944 -1.1297 1.6275 30 1 3.7502 1.3693 5.0004 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140931306.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:50 Heat of formation + Delta-G solvation = 5.773190 kcal Electronic energy + Delta-G solvation = -13860.567261 eV Core-core repulsion = 11463.983064 eV Total energy + Delta-G solvation = -2396.584197 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.23854 -38.83553 -35.63627 -34.75638 -32.74274 -31.55716 -29.11405 -26.34887 -24.26014 -23.49093 -22.56210 -21.35992 -19.02048 -18.46020 -17.65767 -16.70103 -16.55574 -15.81648 -15.39227 -15.17298 -14.87198 -14.55228 -14.29936 -13.56954 -13.27792 -12.98343 -12.63426 -12.55745 -12.31940 -12.24255 -11.91029 -11.67448 -11.51877 -11.42843 -10.76636 -9.81141 -9.08194 -8.27267 -6.30969 0.54174 1.36503 1.37522 1.48183 1.75007 1.93496 2.35154 3.04805 3.23382 3.45920 3.89954 4.08598 4.16779 4.23889 4.42931 4.54419 4.67422 4.82515 4.86687 4.87817 5.00242 5.11967 5.18282 5.33354 5.44680 5.57430 5.96288 6.27864 6.61003 6.75345 6.76106 7.32291 8.89779 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.040911 B = 0.008650 C = 0.007671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.256481 B = 3236.218870 C = 3649.129806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.041 3.959 3 N -0.547 5.547 4 C 0.174 3.826 5 C -0.516 4.516 6 H 0.032 0.968 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.947 3.053 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.245 1.245 13 C 0.141 3.859 14 C -0.034 4.034 15 C -0.042 4.042 16 N -0.516 5.516 17 C 0.172 3.828 18 O -0.218 6.218 19 H 0.082 0.918 20 H 0.045 0.955 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.081 0.919 24 H -0.002 1.002 25 H 0.038 0.962 26 H 0.266 0.734 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.201 0.799 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.581 -13.068 5.520 14.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.086 4.086 3 N -0.272 5.272 4 C 0.047 3.953 5 C -0.555 4.555 6 H 0.050 0.950 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.770 3.230 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.169 1.169 13 C 0.013 3.987 14 C -0.087 4.087 15 C -0.180 4.180 16 N -0.244 5.244 17 C -0.054 4.054 18 O -0.104 6.104 19 H 0.101 0.899 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.099 0.901 24 H 0.016 0.984 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.218 0.782 30 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges 2.378 -13.111 6.177 14.687 hybrid contribution 0.098 0.644 -1.553 1.684 sum 2.476 -12.467 4.624 13.526 Atomic orbital electron populations 1.21745 0.94727 1.02000 1.01482 1.22273 0.96805 0.88390 1.01181 1.61798 1.16090 1.17404 1.31924 1.19971 0.96113 0.93074 0.86121 1.21272 1.46250 0.91010 0.96949 0.94981 1.25872 0.95011 0.94997 1.03145 1.70062 1.51238 1.04740 1.33009 0.85714 0.79452 0.79364 0.78426 1.19115 1.20884 1.16884 1.20311 0.90394 1.02285 0.85702 1.23510 1.05719 0.90323 0.89196 1.23284 1.06340 0.97384 0.91036 1.70434 1.19892 1.22002 1.12111 1.29094 0.98161 0.83859 0.94251 1.84503 1.68238 1.41415 1.16255 0.89902 0.93569 0.93727 0.93916 0.90085 0.98397 0.94401 0.92466 0.91016 0.89774 0.78179 0.69396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 9.98 71.98 0.72 -3.54 16 2 C 0.04 1.28 5.55 86.30 0.48 1.76 16 3 N -0.55 -22.02 4.37 -905.38 -3.96 -25.97 16 4 C 0.17 8.01 3.65 85.56 0.31 8.33 16 5 C -0.52 -29.65 9.17 25.60 0.23 -29.42 16 6 H 0.03 2.09 7.89 -2.91 -0.02 2.07 16 7 C 0.01 0.39 5.47 84.65 0.46 0.86 16 8 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 9 Si 0.95 43.07 27.37 68.60 1.88 44.95 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.25 -10.18 6.69 99.48 0.67 -9.51 16 13 C 0.14 5.14 5.34 85.56 0.46 5.59 16 14 C -0.03 -1.12 6.33 24.79 0.16 -0.96 16 15 C -0.04 -1.19 10.15 83.40 0.85 -0.35 16 16 N -0.52 -14.61 11.29 -316.07 -3.57 -18.18 16 17 C 0.17 4.30 13.23 130.48 1.73 6.03 16 18 O -0.22 -7.30 10.78 -3.76 -0.04 -7.34 16 19 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 20 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 21 H 0.04 1.45 6.52 -2.39 -0.02 1.44 16 22 H 0.04 1.21 8.05 -2.39 -0.02 1.19 16 23 H 0.08 2.29 5.53 -2.39 -0.01 2.28 16 24 H 0.00 -0.07 7.40 -2.39 -0.02 -0.09 16 25 H 0.04 1.71 5.40 -2.39 -0.01 1.70 16 26 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 27 H 0.07 3.06 7.32 -2.38 -0.02 3.05 16 28 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 29 H 0.20 4.46 7.95 -2.91 -0.02 4.44 16 30 H 0.29 3.73 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -70.44 254.37 1.09 -69.36 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.08 Total: 7.99 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 5.39 Total: -11.70 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -7.23 Total: -103.26 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.04 Total: -7.34 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.95 kcal Total: -70.44 1.09 -69.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140931306.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.130 kcal (2) G-P(sol) polarization free energy of solvation -70.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds