Wall clock time and date at job start Sun Mar 29 2020 21:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40509 * 127.02072 * 2 1 4 4 H 0.97000 * 126.61098 * 0.02562 * 3 2 1 5 5 C 1.35018 * 106.77215 * 179.97438 * 3 2 1 6 6 N 1.30814 * 109.35601 * 359.72775 * 5 3 2 7 7 C 1.34156 * 110.10103 * 0.45188 * 6 5 3 8 8 N 1.33134 * 126.08954 * 179.81495 * 7 6 5 9 9 C 1.32993 * 120.00390 * 359.69225 * 8 7 6 10 10 O 1.21571 * 120.00274 * 0.02562 * 9 8 7 11 11 C 1.50706 * 120.00156 * 180.02562 * 9 8 7 12 12 C 1.50698 * 109.47294 * 180.02562 * 11 9 8 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 9 15 15 N 1.31518 * 119.99944 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47418 * 89.99710 * 16 14 12 18 18 H 1.48498 * 109.47091 * 209.99770 * 16 14 12 19 19 H 1.48498 * 109.46997 * 329.99580 * 16 14 12 20 20 H 1.09005 * 109.46865 * 270.01711 * 1 2 3 21 21 H 1.09000 * 109.47127 * 30.02073 * 1 2 3 22 22 H 1.09005 * 109.47075 * 150.02315 * 1 2 3 23 23 H 1.08006 * 125.32289 * 180.02562 * 5 3 2 24 24 H 1.09001 * 109.46953 * 299.99735 * 11 9 8 25 25 H 1.09000 * 109.47318 * 59.99333 * 11 9 8 26 26 H 0.96997 * 119.99752 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3110 1.1218 0.0000 4 1 2.0377 2.0525 0.0003 5 6 3.5778 0.6546 0.0006 6 7 3.5574 -0.6534 0.0068 7 6 2.2905 -1.0948 0.0006 8 7 1.9040 -2.3688 0.0007 9 6 2.8130 -3.3396 0.0013 10 8 3.9970 -3.0638 0.0022 11 6 2.3753 -4.7817 0.0009 12 6 3.5890 -5.6751 0.0024 13 1 4.5783 -5.2418 0.0031 14 6 3.4364 -7.0453 0.0017 15 7 2.2316 -7.5728 0.0004 16 14 4.9408 -8.1526 0.0028 17 1 5.3382 -8.4465 1.4032 18 1 4.6214 -9.4223 -0.6979 19 1 6.0588 -7.4693 -0.6960 20 1 -0.3633 0.0003 1.0277 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5135 23 1 4.4686 1.2652 0.0011 24 1 1.7775 -4.9802 0.8905 25 1 1.7786 -4.9801 -0.8894 26 1 2.1243 -8.5368 0.0003 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143188790.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:06 Heat of formation + Delta-G solvation = 64.583743 kcal Electronic energy + Delta-G solvation = -13269.984815 eV Core-core repulsion = 10772.410491 eV Total energy + Delta-G solvation = -2497.574324 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.14130 -39.79286 -35.27118 -35.16646 -34.75500 -32.08245 -30.74790 -28.22063 -25.94664 -23.80957 -22.98545 -20.34617 -19.11739 -18.43975 -17.28542 -17.13334 -16.84093 -16.47491 -15.79161 -15.45987 -15.08769 -14.20040 -14.17359 -13.55114 -13.20442 -12.74349 -12.57189 -12.05599 -11.94586 -11.49192 -11.38086 -11.21952 -10.98239 -10.58414 -9.81897 -8.97008 -8.19068 -6.27846 -0.02184 0.26163 1.38717 1.43328 1.56188 1.65968 2.44501 2.67271 2.96632 3.16048 3.54610 3.73566 3.96420 4.28169 4.41745 4.69533 4.94994 4.97656 5.21952 5.40088 5.70074 5.78906 6.23176 6.43257 6.57913 6.84246 7.08251 7.39268 7.98969 8.94528 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.066408 B = 0.006935 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.531636 B = 4036.571450 C = 4437.655848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.411 5.411 3 N -0.461 5.461 4 H 0.477 0.523 5 C 0.384 3.616 6 N -0.603 5.603 7 C 0.573 3.427 8 N -0.683 5.683 9 C 0.485 3.515 10 O -0.571 6.571 11 C 0.033 3.967 12 C -0.536 4.536 13 H 0.053 0.947 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.976 3.024 17 H -0.268 1.268 18 H -0.269 1.269 19 H -0.273 1.273 20 H 0.085 0.915 21 H 0.127 0.873 22 H 0.087 0.913 23 H 0.301 0.699 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.624 25.300 -0.111 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.215 5.215 3 N -0.190 5.190 4 H 0.332 0.668 5 C 0.089 3.911 6 N -0.339 5.339 7 C 0.213 3.787 8 N -0.450 5.450 9 C 0.272 3.728 10 O -0.449 6.449 11 C -0.006 4.006 12 C -0.574 4.574 13 H 0.072 0.928 14 C -0.195 4.195 15 N -0.571 5.571 16 Si 0.799 3.201 17 H -0.193 1.193 18 H -0.193 1.193 19 H -0.198 1.198 20 H 0.103 0.897 21 H 0.145 0.855 22 H 0.106 0.894 23 H 0.316 0.684 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.524 24.364 -0.107 24.618 hybrid contribution 0.211 0.123 0.023 0.246 sum -3.313 24.488 -0.085 24.711 Atomic orbital electron populations 1.22308 0.69371 1.06355 1.04906 1.48046 1.05291 0.97573 1.70636 1.45453 1.02208 1.03228 1.68105 0.66834 1.27439 0.88718 0.91053 0.83870 1.72084 1.19890 1.11474 1.30428 1.21308 0.82914 0.89144 0.85359 1.69402 1.37612 0.95027 1.42986 1.21795 0.85243 0.91772 0.74032 1.90541 1.22200 1.85997 1.46138 1.18652 0.97029 0.87878 0.97046 1.21459 0.93270 0.91806 1.50910 0.92839 1.25977 0.99839 0.99305 0.94400 1.70104 1.23326 1.12154 1.51511 0.85305 0.78551 0.77505 0.78735 1.19336 1.19349 1.19760 0.89665 0.85488 0.89390 0.68447 0.95922 0.95886 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.55 11.51 127.77 1.47 3.02 15 2 N -0.41 -9.11 4.12 -371.88 -1.53 -10.64 15 3 N -0.46 -4.47 7.36 -60.14 -0.44 -4.92 15 4 H 0.48 -1.25 8.96 -213.05 -1.91 -3.16 15 5 C 0.38 5.74 13.06 180.18 2.35 8.10 15 6 N -0.60 -21.63 9.18 -201.11 -1.85 -23.48 15 7 C 0.57 22.27 8.39 261.08 2.19 24.46 15 8 N -0.68 -34.60 10.42 -315.30 -3.28 -37.88 15 9 C 0.48 29.61 7.70 87.94 0.68 30.29 15 10 O -0.57 -37.02 13.97 -3.94 -0.06 -37.08 15 11 C 0.03 2.20 5.53 29.10 0.16 2.36 15 12 C -0.54 -36.90 8.92 25.60 0.23 -36.67 15 13 H 0.05 3.81 6.75 -2.91 -0.02 3.79 15 14 C 0.00 0.14 5.46 84.65 0.46 0.60 15 15 N -0.93 -61.35 13.29 21.45 0.28 -61.07 15 16 Si 0.98 50.10 29.54 68.60 2.03 52.12 15 17 H -0.27 -13.13 7.11 99.48 0.71 -12.42 15 18 H -0.27 -12.85 7.11 99.48 0.71 -12.15 15 19 H -0.27 -13.91 7.11 99.48 0.71 -13.21 15 20 H 0.08 1.04 8.14 -2.38 -0.02 1.02 15 21 H 0.13 0.50 8.14 -2.39 -0.02 0.48 15 22 H 0.09 1.73 8.14 -2.38 -0.02 1.71 15 23 H 0.30 0.04 8.06 -2.91 -0.02 0.02 15 24 H 0.02 1.54 8.14 -2.39 -0.02 1.52 15 25 H 0.02 1.56 8.14 -2.39 -0.02 1.54 15 26 H 0.27 16.21 8.31 -92.71 -0.77 15.44 15 Total: -1.00 -108.20 242.57 1.99 -106.21 By element: Atomic # 1 Polarization: -14.73 SS G_CDS: -0.70 Total: -15.43 kcal Atomic # 6 Polarization: 24.61 SS G_CDS: 7.54 Total: 32.15 kcal Atomic # 7 Polarization: -131.16 SS G_CDS: -6.82 Total: -137.98 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -0.06 Total: -37.08 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 2.03 Total: 52.12 kcal Total: -108.20 1.99 -106.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143188790.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.795 kcal (2) G-P(sol) polarization free energy of solvation -108.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds