Wall clock time and date at job start Sun Mar 29 2020 21:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40298 * 126.84822 * 2 1 4 4 N 1.28740 * 108.17847 * 180.27952 * 3 2 1 5 5 C 1.33275 * 109.98837 * 359.74123 * 4 3 2 6 6 C 1.35800 * 108.87279 * 0.02562 * 5 4 3 7 7 N 1.39537 * 126.67662 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99452 * 0.02562 * 7 6 5 9 9 O 1.21293 * 120.00456 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99675 * 179.72537 * 8 7 6 11 11 C 1.50703 * 109.47148 * 180.28037 * 10 8 7 12 12 H 1.08001 * 120.00037 * 359.97438 * 11 10 8 13 13 C 1.37875 * 120.00214 * 179.97438 * 11 10 8 14 14 N 1.31520 * 119.99609 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00201 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46807 * 60.00091 * 15 13 11 17 17 H 1.48498 * 109.47276 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47057 * 299.99983 * 15 13 11 19 19 H 1.09004 * 109.47215 * 270.16138 * 1 2 3 20 20 H 1.08994 * 109.47628 * 30.16248 * 1 2 3 21 21 H 1.09005 * 109.47466 * 150.16816 * 1 2 3 22 22 H 1.07993 * 125.56263 * 179.97438 * 5 4 3 23 23 H 0.97001 * 120.00063 * 180.02562 * 7 6 5 24 24 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 25 25 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 26 26 H 0.97006 * 119.99301 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3063 1.1227 0.0000 4 7 3.5260 0.7106 -0.0060 5 6 3.5566 -0.6218 -0.0043 6 6 2.2821 -1.0905 0.0025 7 7 1.8862 -2.4285 0.0058 8 6 2.8143 -3.4058 0.0025 9 8 3.9936 -3.1224 -0.0028 10 6 2.3868 -4.8509 0.0123 11 6 3.6067 -5.7357 0.0132 12 1 4.5930 -5.2956 0.0069 13 6 3.4638 -7.1070 0.0221 14 7 2.2627 -7.6429 0.0292 15 14 4.9759 -8.2037 0.0225 16 1 5.7926 -7.9203 1.2300 17 1 4.5547 -9.6277 0.0322 18 1 5.7826 -7.9350 -1.1950 19 1 -0.3634 0.0029 1.0277 20 1 -0.3634 0.8884 -0.5163 21 1 -0.3634 -0.8915 -0.5112 22 1 4.4494 -1.2295 -0.0087 23 1 0.9431 -2.6552 0.0104 24 1 1.7940 -5.0485 0.9055 25 1 1.7879 -5.0587 -0.8744 26 1 2.1622 -8.6077 0.0359 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189310.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:49 Heat of formation + Delta-G solvation = 61.682440 kcal Electronic energy + Delta-G solvation = -13295.401638 eV Core-core repulsion = 10797.701504 eV Total energy + Delta-G solvation = -2497.700134 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.83158 -39.11052 -35.10484 -33.61568 -33.15420 -30.07580 -28.45243 -27.54453 -24.18324 -22.24749 -21.48773 -19.77237 -17.93943 -16.75799 -16.09768 -15.83276 -15.64188 -14.57620 -14.51829 -14.00105 -13.30214 -13.21182 -12.97404 -12.27138 -11.70439 -11.62815 -10.98437 -10.92664 -10.85341 -10.71525 -10.11550 -9.59838 -9.49969 -9.15842 -8.58526 -8.08491 -6.22087 -4.23507 1.48548 2.07364 2.82809 3.29442 3.29856 3.32679 3.39443 3.40708 4.36067 4.42129 4.90586 5.04304 5.15158 5.17086 5.39705 5.56629 5.86943 5.97510 6.61989 6.87737 6.92243 7.02623 7.50363 7.80697 8.04653 8.46477 8.66013 8.86882 9.42803 10.89860 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.066208 B = 0.006878 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.808318 B = 4069.718341 C = 4472.071297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.399 5.399 3 N -0.095 5.095 4 N -0.226 5.226 5 C -0.096 4.096 6 C 0.295 3.705 7 N -0.656 5.656 8 C 0.521 3.479 9 O -0.503 6.503 10 C 0.015 3.985 11 C -0.517 4.517 12 H 0.078 0.922 13 C 0.058 3.942 14 N -0.899 5.899 15 Si 0.906 3.094 16 H -0.274 1.274 17 H -0.287 1.287 18 H -0.274 1.274 19 H 0.081 0.919 20 H 0.097 0.903 21 H 0.086 0.914 22 H 0.208 0.792 23 H 0.410 0.590 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.846 8.921 -0.081 11.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.194 5.194 3 N -0.074 5.074 4 N -0.095 5.095 5 C -0.257 4.257 6 C 0.067 3.933 7 N -0.307 5.307 8 C 0.312 3.688 9 O -0.374 6.374 10 C -0.025 4.025 11 C -0.555 4.555 12 H 0.096 0.904 13 C -0.143 4.143 14 N -0.538 5.538 15 Si 0.733 3.267 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.200 1.200 19 H 0.100 0.900 20 H 0.116 0.884 21 H 0.105 0.895 22 H 0.224 0.776 23 H 0.246 0.754 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.031 10.391 -0.087 12.014 hybrid contribution -0.286 -1.874 0.011 1.896 sum -6.317 8.516 -0.076 10.604 Atomic orbital electron populations 1.21951 0.74000 1.04977 1.03974 1.50502 1.07946 1.04588 1.56331 1.81945 0.93846 1.04231 1.27347 1.74166 1.12832 1.11949 1.10564 1.23596 0.97031 0.90128 1.14918 1.19214 0.91415 0.82160 1.00540 1.43876 1.12121 1.00633 1.74046 1.22599 0.85116 0.88388 0.72669 1.90493 1.17880 1.82960 1.46035 1.19300 1.00071 0.82899 1.00206 1.21071 0.92684 0.90321 1.51433 0.90384 1.24993 0.96502 0.98095 0.94736 1.69935 1.21658 1.11871 1.50306 0.86416 0.82480 0.78742 0.79048 1.19951 1.21283 1.19957 0.90002 0.88390 0.89503 0.77576 0.75406 0.92608 0.92628 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 11.39 59.84 0.68 1.45 15 2 N -0.40 -5.70 4.09 -66.98 -0.27 -5.97 15 3 N -0.09 -1.62 13.81 60.35 0.83 -0.79 15 4 N -0.23 -4.24 12.32 30.23 0.37 -3.87 15 5 C -0.10 -1.80 10.76 -17.80 -0.19 -1.99 15 6 C 0.29 4.88 7.76 -152.29 -1.18 3.70 15 7 N -0.66 -10.23 5.42 -11.28 -0.06 -10.29 15 8 C 0.52 10.53 7.79 -10.98 -0.09 10.44 15 9 O -0.50 -11.63 12.63 5.55 0.07 -11.56 15 10 C 0.01 0.33 5.46 -29.03 -0.16 0.17 15 11 C -0.52 -13.81 8.92 -34.44 -0.31 -14.12 15 12 H 0.08 2.17 6.75 -52.49 -0.35 1.81 15 13 C 0.06 1.57 5.46 -17.82 -0.10 1.47 15 14 N -0.90 -24.69 13.29 55.43 0.74 -23.95 15 15 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 15 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 17 H -0.29 -6.54 7.11 56.52 0.40 -6.13 15 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 19 H 0.08 0.55 8.14 -51.93 -0.42 0.13 15 20 H 0.10 0.67 8.14 -51.93 -0.42 0.24 15 21 H 0.09 0.53 7.65 -51.93 -0.40 0.13 15 22 H 0.21 4.10 5.83 -52.49 -0.31 3.79 15 23 H 0.41 4.78 8.16 -40.82 -0.33 4.45 15 24 H 0.06 1.25 8.14 -51.92 -0.42 0.83 15 25 H 0.06 1.25 8.14 -51.93 -0.42 0.82 15 26 H 0.26 6.93 8.31 -40.82 -0.34 6.59 15 LS Contribution 239.22 15.07 3.60 3.60 Total: -1.00 -31.60 239.22 -3.29 -34.89 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -2.22 Total: 0.81 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.34 Total: 1.12 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 1.61 Total: -44.87 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.07 Total: -11.56 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -31.60 -3.29 -34.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189310.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.577 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds