Wall clock time and date at job start Sun Mar 29 2020 21:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40298 * 126.84822 * 2 1 4 4 N 1.28740 * 108.17847 * 180.27952 * 3 2 1 5 5 C 1.33275 * 109.98837 * 359.74123 * 4 3 2 6 6 C 1.35800 * 108.87279 * 0.02562 * 5 4 3 7 7 N 1.39537 * 126.67662 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99452 * 0.02562 * 7 6 5 9 9 O 1.21293 * 120.00456 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99675 * 179.72537 * 8 7 6 11 11 C 1.50703 * 109.47148 * 180.28037 * 10 8 7 12 12 H 1.08001 * 120.00037 * 359.97438 * 11 10 8 13 13 C 1.37875 * 120.00214 * 179.97438 * 11 10 8 14 14 N 1.31520 * 119.99609 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00201 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46807 * 60.00091 * 15 13 11 17 17 H 1.48498 * 109.47276 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47057 * 299.99983 * 15 13 11 19 19 H 1.09004 * 109.47215 * 270.16138 * 1 2 3 20 20 H 1.08994 * 109.47628 * 30.16248 * 1 2 3 21 21 H 1.09005 * 109.47466 * 150.16816 * 1 2 3 22 22 H 1.07993 * 125.56263 * 179.97438 * 5 4 3 23 23 H 0.97001 * 120.00063 * 180.02562 * 7 6 5 24 24 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 25 25 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 26 26 H 0.97006 * 119.99301 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3063 1.1227 0.0000 4 7 3.5260 0.7106 -0.0060 5 6 3.5566 -0.6218 -0.0043 6 6 2.2821 -1.0905 0.0025 7 7 1.8862 -2.4285 0.0058 8 6 2.8143 -3.4058 0.0025 9 8 3.9936 -3.1224 -0.0028 10 6 2.3868 -4.8509 0.0123 11 6 3.6067 -5.7357 0.0132 12 1 4.5930 -5.2956 0.0069 13 6 3.4638 -7.1070 0.0221 14 7 2.2627 -7.6429 0.0292 15 14 4.9759 -8.2037 0.0225 16 1 5.7926 -7.9203 1.2300 17 1 4.5547 -9.6277 0.0322 18 1 5.7826 -7.9350 -1.1950 19 1 -0.3634 0.0029 1.0277 20 1 -0.3634 0.8884 -0.5163 21 1 -0.3634 -0.8915 -0.5112 22 1 4.4494 -1.2295 -0.0087 23 1 0.9431 -2.6552 0.0104 24 1 1.7940 -5.0485 0.9055 25 1 1.7879 -5.0587 -0.8744 26 1 2.1622 -8.6077 0.0359 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189310.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:49 Heat of formation + Delta-G solvation = 38.683459 kcal Electronic energy + Delta-G solvation = -13296.398949 eV Core-core repulsion = 10797.701504 eV Total energy + Delta-G solvation = -2498.697444 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.15904 -40.68995 -36.49669 -35.15121 -34.82816 -31.72748 -30.06504 -28.50836 -26.03745 -23.67579 -22.81926 -21.29325 -19.20249 -18.57451 -17.54251 -17.33199 -17.11071 -16.37680 -16.03886 -15.27681 -14.88165 -14.20166 -14.18357 -13.78107 -13.43854 -13.05808 -12.73820 -12.65899 -12.37121 -12.13397 -12.03333 -11.48167 -10.84063 -10.76665 -10.60920 -9.47370 -8.25641 -6.32032 0.16537 0.85955 1.36426 1.45511 1.46106 1.54789 1.85623 2.08361 2.45136 3.11851 3.49972 3.73754 3.96154 4.23310 4.33723 4.56392 4.62123 4.75684 5.04297 5.21992 5.28214 5.62273 5.73326 5.95789 6.34606 6.79816 7.05357 7.16597 7.37768 8.85658 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.066208 B = 0.006878 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.808318 B = 4069.718341 C = 4472.071297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.377 5.377 3 N -0.100 5.100 4 N -0.250 5.250 5 C -0.116 4.116 6 C 0.292 3.708 7 N -0.631 5.631 8 C 0.530 3.470 9 O -0.537 6.537 10 C 0.019 3.981 11 C -0.540 4.540 12 H 0.060 0.940 13 C 0.017 3.983 14 N -0.920 5.920 15 Si 0.959 3.041 16 H -0.274 1.274 17 H -0.278 1.278 18 H -0.274 1.274 19 H 0.105 0.895 20 H 0.117 0.883 21 H 0.114 0.886 22 H 0.190 0.810 23 H 0.432 0.568 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.307 9.095 -0.080 12.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.173 5.173 3 N -0.079 5.079 4 N -0.118 5.118 5 C -0.277 4.277 6 C 0.063 3.937 7 N -0.283 5.283 8 C 0.320 3.680 9 O -0.410 6.410 10 C -0.020 4.020 11 C -0.578 4.578 12 H 0.078 0.922 13 C -0.182 4.182 14 N -0.560 5.560 15 Si 0.784 3.216 16 H -0.199 1.199 17 H -0.203 1.203 18 H -0.199 1.199 19 H 0.123 0.877 20 H 0.135 0.865 21 H 0.133 0.867 22 H 0.207 0.793 23 H 0.272 0.728 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.565 10.595 -0.086 13.019 hybrid contribution 0.055 -1.854 0.013 1.855 sum -7.510 8.741 -0.073 11.524 Atomic orbital electron populations 1.22592 0.70172 1.07411 1.06283 1.50800 1.09746 1.02843 1.53869 1.81835 0.93795 1.05262 1.27013 1.74146 1.13824 1.11973 1.11848 1.23460 0.97765 0.90398 1.16124 1.18935 0.91270 0.82624 1.00882 1.43234 1.12536 0.99676 1.72846 1.22010 0.84986 0.88401 0.72565 1.90503 1.19422 1.83409 1.47677 1.19111 0.98559 0.84001 1.00366 1.21329 0.93434 0.91403 1.51652 0.92205 1.25653 0.98939 0.99203 0.94451 1.69990 1.22912 1.12257 1.50838 0.85585 0.79585 0.77545 0.78859 1.19892 1.20256 1.19896 0.87678 0.86450 0.86740 0.79344 0.72818 0.92295 0.92292 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 11.39 127.77 1.46 2.38 15 2 N -0.38 -9.79 4.09 -365.82 -1.50 -11.29 15 3 N -0.10 -3.26 13.81 37.02 0.51 -2.75 15 4 N -0.25 -9.30 12.32 -58.27 -0.72 -10.01 15 5 C -0.12 -4.36 10.76 83.91 0.90 -3.46 15 6 C 0.29 9.21 7.76 130.91 1.02 10.23 15 7 N -0.63 -18.44 5.42 -308.00 -1.67 -20.11 15 8 C 0.53 21.08 7.79 87.66 0.68 21.76 15 9 O -0.54 -25.15 12.63 -3.07 -0.04 -25.18 15 10 C 0.02 0.85 5.46 29.10 0.16 1.01 15 11 C -0.54 -28.93 8.92 25.60 0.23 -28.71 15 12 H 0.06 3.38 6.75 -2.91 -0.02 3.36 15 13 C 0.02 0.91 5.46 84.65 0.46 1.37 15 14 N -0.92 -49.91 13.29 21.45 0.28 -49.62 15 15 Si 0.96 42.78 29.54 68.60 2.03 44.80 15 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 17 H -0.28 -11.85 7.11 99.48 0.71 -11.14 15 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 19 H 0.10 0.94 8.14 -2.38 -0.02 0.92 15 20 H 0.12 1.10 8.14 -2.39 -0.02 1.08 15 21 H 0.11 0.86 7.65 -2.38 -0.02 0.84 15 22 H 0.19 7.77 5.83 -2.91 -0.02 7.75 15 23 H 0.43 8.71 8.16 -92.71 -0.76 7.95 15 24 H 0.06 2.59 8.14 -2.38 -0.02 2.57 15 25 H 0.06 2.59 8.14 -2.39 -0.02 2.57 15 26 H 0.27 13.78 8.31 -92.70 -0.77 13.01 15 Total: -1.00 -67.74 239.22 4.27 -63.47 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.46 Total: 6.11 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 4.91 Total: 4.59 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -3.09 Total: -93.79 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.04 Total: -25.18 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -67.74 4.27 -63.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189310.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.156 kcal (2) G-P(sol) polarization free energy of solvation -67.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds