Wall clock time and date at job start Sun Mar 29 2020 22:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29858 * 125.73880 * 2 1 4 4 O 1.41676 * 107.92972 * 180.02562 * 3 2 1 5 5 N 1.41710 * 107.45497 * 359.75465 * 4 3 2 6 6 C 1.30519 * 107.69340 * 0.41543 * 5 4 3 7 7 N 1.39495 * 125.80351 * 179.86043 * 6 5 4 8 8 C 1.34773 * 119.99772 * 359.68312 * 7 6 5 9 9 O 1.21274 * 120.00118 * 359.73111 * 8 7 6 10 10 C 1.50706 * 120.00081 * 180.02562 * 8 7 6 11 11 C 1.50696 * 109.47259 * 179.72770 * 10 8 7 12 12 H 1.08002 * 120.00318 * 359.97438 * 11 10 8 13 13 C 1.37879 * 119.99922 * 179.97438 * 11 10 8 14 14 N 1.31513 * 119.99824 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99920 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46742 * 90.00640 * 15 13 11 17 17 H 1.48496 * 109.46943 * 209.99935 * 15 13 11 18 18 H 1.48493 * 109.47567 * 330.00545 * 15 13 11 19 19 H 1.09000 * 109.47178 * 269.97611 * 1 2 3 20 20 H 1.09000 * 109.46930 * 29.97390 * 1 2 3 21 21 H 1.08997 * 109.47589 * 149.97246 * 1 2 3 22 22 H 0.96998 * 119.99703 * 179.69248 * 7 6 5 23 23 H 1.09001 * 109.46564 * 299.73030 * 10 8 7 24 24 H 1.08998 * 109.47012 * 59.72084 * 10 8 7 25 25 H 0.97005 * 119.99648 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0540 0.0000 4 8 3.6143 0.6207 -0.0006 5 7 3.6056 -0.7963 0.0048 6 6 2.3597 -1.1853 -0.0006 7 7 1.9180 -2.5085 -0.0007 8 6 2.8117 -3.5173 -0.0013 9 8 3.9999 -3.2747 -0.0067 10 6 2.3345 -4.9468 -0.0020 11 6 3.5231 -5.8731 -0.0093 12 1 4.5240 -5.4674 -0.0135 13 6 3.3328 -7.2387 -0.0107 14 7 2.1140 -7.7328 -0.0061 15 14 4.8061 -8.3871 -0.0204 16 1 5.2038 -8.6938 1.3771 17 1 4.4474 -9.6464 -0.7207 18 1 5.9382 -7.7339 -0.7252 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3634 -0.8897 -0.5142 22 1 0.9676 -2.7024 -0.0005 23 1 1.7361 -5.1304 0.8904 24 1 1.7279 -5.1269 -0.8895 25 1 1.9801 -8.6936 -0.0074 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189659.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:07 Heat of formation + Delta-G solvation = 23.935642 kcal Electronic energy + Delta-G solvation = -13300.272137 eV Core-core repulsion = 10703.216517 eV Total energy + Delta-G solvation = -2597.055620 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.40612 -40.65605 -36.56400 -35.17644 -34.85139 -32.85463 -30.86789 -29.64322 -26.41540 -24.23803 -22.24219 -21.29605 -19.36642 -18.53400 -17.56391 -17.36855 -16.86590 -16.37599 -16.14034 -15.18577 -14.91128 -14.26872 -14.21406 -13.87290 -13.63568 -13.00506 -12.97624 -12.79358 -12.62662 -12.58345 -12.09926 -11.69623 -11.50359 -10.93407 -10.64531 -10.43088 -8.28590 -6.34909 -0.42152 0.77183 1.09284 1.40598 1.42154 1.54051 1.77138 1.88968 2.08605 2.41187 3.05649 3.08298 3.89645 4.10871 4.26548 4.67928 4.74972 4.97210 5.02945 5.14287 5.20926 5.65591 5.73263 6.00296 6.39959 6.76044 7.05070 7.34729 8.82716 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.064811 B = 0.006771 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.925051 B = 4134.275536 C = 4545.746389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.113 3.887 3 N -0.297 5.297 4 O -0.024 6.024 5 N -0.329 5.329 6 C 0.294 3.706 7 N -0.615 5.615 8 C 0.513 3.487 9 O -0.531 6.531 10 C 0.019 3.981 11 C -0.545 4.545 12 H 0.051 0.949 13 C 0.021 3.979 14 N -0.916 5.916 15 Si 0.957 3.043 16 H -0.273 1.273 17 H -0.272 1.272 18 H -0.279 1.279 19 H 0.126 0.874 20 H 0.112 0.888 21 H 0.122 0.878 22 H 0.449 0.551 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.512 10.570 0.079 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.076 4.076 3 N -0.046 5.046 4 O -0.150 6.150 5 N -0.088 5.088 6 C 0.019 3.981 7 N -0.275 5.275 8 C 0.303 3.697 9 O -0.402 6.402 10 C -0.020 4.020 11 C -0.583 4.583 12 H 0.069 0.931 13 C -0.179 4.179 14 N -0.555 5.555 15 Si 0.782 3.218 16 H -0.198 1.198 17 H -0.197 1.197 18 H -0.205 1.205 19 H 0.144 0.856 20 H 0.130 0.870 21 H 0.140 0.860 22 H 0.292 0.708 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.491 11.404 0.077 14.218 hybrid contribution 0.096 -1.214 -0.003 1.218 sum -8.395 10.190 0.074 13.203 Atomic orbital electron populations 1.21023 0.79000 1.07721 1.07308 1.26483 1.01668 0.85097 0.94307 1.79609 0.89311 1.20307 1.15358 1.93300 1.20580 1.13553 1.87538 1.80719 1.16133 0.89798 1.22166 1.23406 0.90148 0.89154 0.95434 1.43528 1.13049 0.98997 1.71884 1.22403 0.85754 0.88739 0.72846 1.90694 1.18696 1.84705 1.46070 1.19143 0.98236 0.83800 1.00811 1.21317 0.93342 0.91565 1.52061 0.93079 1.25603 0.98680 0.99306 0.94342 1.69972 1.21313 1.13654 1.50562 0.85564 0.79476 0.78215 0.78502 1.19841 1.19715 1.20463 0.85618 0.86966 0.86001 0.70759 0.91736 0.91706 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.37 71.24 0.74 -0.02 15 2 C 0.11 2.53 7.40 44.87 0.33 2.86 15 3 N -0.30 -8.68 12.94 -43.80 -0.57 -9.24 15 4 O -0.02 -0.92 13.64 71.00 0.97 0.04 15 5 N -0.33 -13.56 11.15 -51.34 -0.57 -14.13 15 6 C 0.29 9.25 7.97 135.25 1.08 10.33 15 7 N -0.62 -17.97 5.42 -303.80 -1.65 -19.61 15 8 C 0.51 21.60 7.79 87.66 0.68 22.28 15 9 O -0.53 -27.82 14.16 -3.01 -0.04 -27.86 15 10 C 0.02 0.88 5.46 29.10 0.16 1.04 15 11 C -0.54 -30.19 8.92 25.60 0.23 -29.97 15 12 H 0.05 3.06 6.75 -2.91 -0.02 3.04 15 13 C 0.02 1.12 5.46 84.66 0.46 1.58 15 14 N -0.92 -49.78 13.29 21.45 0.28 -49.49 15 15 Si 0.96 43.71 29.54 68.60 2.03 45.74 15 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 17 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15 18 H -0.28 -13.05 7.11 99.48 0.71 -12.35 15 19 H 0.13 0.52 8.14 -2.39 -0.02 0.50 15 20 H 0.11 0.64 8.14 -2.39 -0.02 0.62 15 21 H 0.12 0.38 7.80 -2.39 -0.02 0.37 15 22 H 0.45 7.93 8.37 -92.71 -0.78 7.16 15 23 H 0.06 2.83 8.14 -2.39 -0.02 2.81 15 24 H 0.07 2.84 8.14 -2.39 -0.02 2.82 15 25 H 0.27 13.80 8.31 -92.70 -0.77 13.03 15 Total: -1.00 -75.55 238.62 4.59 -70.96 By element: Atomic # 1 Polarization: -4.96 SS G_CDS: 0.46 Total: -4.51 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 3.68 Total: 8.11 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -2.50 Total: -92.48 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: 0.93 Total: -27.82 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -75.55 4.59 -70.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189659.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.896 kcal (2) G-P(sol) polarization free energy of solvation -75.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds