Wall clock time and date at job start Sun Mar 29 2020 21:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76204 * 99.99917 * 2 1 4 4 C 1.39325 * 120.49318 * 180.02562 * 3 2 1 5 5 C 1.39152 * 118.24749 * 180.02562 * 4 3 2 6 6 N 1.38607 * 120.48855 * 179.97438 * 5 4 3 7 7 C 1.36939 * 120.00009 * 0.02562 * 6 5 4 8 8 H 1.08005 * 119.99985 * 359.97438 * 7 6 5 9 9 C 1.38837 * 119.99839 * 180.02562 * 7 6 5 10 10 N 1.31539 * 120.00513 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99992 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47119 * 59.99505 * 11 9 7 13 13 H 1.48500 * 109.47451 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46933 * 299.99758 * 11 9 7 15 15 N 1.33289 * 119.02364 * 359.97438 * 5 4 3 16 16 C 1.31694 * 120.89422 * 359.97438 * 15 5 4 17 17 N 1.31776 * 121.93838 * 0.02562 * 16 15 5 18 18 H 1.09000 * 109.47028 * 59.99834 * 1 2 3 19 19 H 1.08998 * 109.47008 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47503 * 300.00314 * 1 2 3 21 21 H 1.07999 * 120.87147 * 359.74576 * 4 3 2 22 22 H 0.96997 * 119.99956 * 179.97438 * 6 5 4 23 23 H 0.97003 * 120.00495 * 179.97438 * 10 9 7 24 24 H 1.07998 * 119.03248 * 179.97438 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.4210 2.2231 -0.0005 5 6 3.6087 3.6019 0.0000 6 7 4.8871 4.1375 0.0001 7 6 5.9769 3.3084 -0.0010 8 1 5.8403 2.2370 -0.0014 9 6 7.2574 3.8450 -0.0004 10 7 7.4238 5.1498 0.0006 11 14 8.7441 2.7139 -0.0011 12 1 8.7143 1.8579 -1.2142 13 1 9.9858 3.5284 -0.0010 14 1 8.7140 1.8561 1.2108 15 7 2.5411 4.3999 0.0005 16 6 1.3229 3.8995 0.0000 17 7 1.1029 2.6003 -0.0005 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 4.2646 1.5488 0.0032 22 1 5.0097 5.0997 0.0001 23 1 8.3185 5.5247 0.0014 24 1 0.4793 4.5739 0.0009 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155530978.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:27 Heat of formation + Delta-G solvation = 41.753404 kcal Electronic energy + Delta-G solvation = -11321.349012 eV Core-core repulsion = 9167.818900 eV Total energy + Delta-G solvation = -2153.530113 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.047 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.56112 -35.82302 -32.69161 -31.62403 -29.49855 -28.57114 -25.32675 -23.41627 -22.15301 -18.28959 -17.83094 -16.25875 -15.42020 -14.65427 -14.26167 -14.07019 -13.84336 -13.73355 -13.14025 -13.10057 -11.94936 -11.79143 -11.68379 -10.96946 -10.82564 -10.55144 -10.32066 -9.84773 -9.58612 -9.09958 -8.20462 -7.63136 -7.17519 -6.80213 -4.05350 1.99894 2.05300 2.32558 2.63936 3.06708 3.08835 3.09028 3.85559 4.59489 4.71169 5.11193 5.20585 5.40211 5.49837 5.90207 6.06382 6.14017 6.49580 6.56940 7.07448 7.25693 7.61103 7.93892 8.51321 8.95897 9.09944 9.50922 10.34831 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.042411 B = 0.008560 C = 0.007150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.049012 B = 3270.363568 C = 3915.268864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.098 6.098 3 C 0.179 3.821 4 C -0.277 4.277 5 C 0.379 3.621 6 N -0.506 5.506 7 C -0.309 4.309 8 H 0.108 0.892 9 C 0.030 3.970 10 N -0.875 5.875 11 Si 0.939 3.061 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.268 1.268 15 N -0.608 5.608 16 C 0.342 3.658 17 N -0.619 5.619 18 H 0.084 0.916 19 H 0.090 0.910 20 H 0.084 0.916 21 H 0.132 0.868 22 H 0.407 0.593 23 H 0.281 0.719 24 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.500 -6.376 0.003 9.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S 0.138 5.862 3 C -0.070 4.070 4 C -0.316 4.316 5 C 0.129 3.871 6 N -0.112 5.112 7 C -0.440 4.440 8 H 0.125 0.875 9 C -0.177 4.177 10 N -0.510 5.510 11 Si 0.764 3.236 12 H -0.193 1.193 13 H -0.204 1.204 14 H -0.193 1.193 15 N -0.338 5.338 16 C 0.047 3.953 17 N -0.350 5.350 18 H 0.103 0.897 19 H 0.108 0.892 20 H 0.103 0.897 21 H 0.150 0.850 22 H 0.243 0.757 23 H 0.091 0.909 24 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.007 -6.731 0.004 9.021 hybrid contribution 0.681 0.603 0.001 0.910 sum -5.325 -6.128 0.005 8.119 Atomic orbital electron populations 1.23255 0.94645 1.04769 1.06682 1.85460 1.07252 1.00946 1.92500 1.22530 0.91821 0.97048 0.95596 1.21254 0.96319 0.95485 1.18565 1.18133 0.86010 0.88431 0.94547 1.40829 1.00435 1.09703 1.60198 1.19793 0.83429 0.91807 1.48965 0.87470 1.25441 0.99518 0.96630 0.96091 1.69677 1.25020 1.10626 1.45689 0.85770 0.79054 0.79226 0.79508 1.19304 1.20401 1.19300 1.67798 0.98941 1.40059 1.27024 1.24026 0.92592 0.89161 0.89551 1.68461 1.33328 1.03973 1.29206 0.89698 0.89169 0.89694 0.84975 0.75663 0.90864 0.80687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 9.68 101.05 0.98 -0.67 14 2 S -0.10 -1.64 22.73 -107.50 -2.44 -4.09 14 3 C 0.18 3.70 7.00 -16.55 -0.12 3.58 14 4 C -0.28 -6.30 9.17 -38.84 -0.36 -6.65 14 5 C 0.38 9.15 7.67 -154.63 -1.19 7.97 14 6 N -0.51 -12.79 5.43 -11.04 -0.06 -12.85 14 7 C -0.31 -7.81 9.56 -15.05 -0.14 -7.95 14 8 H 0.11 2.59 5.73 -52.48 -0.30 2.29 14 9 C 0.03 0.74 5.50 -17.46 -0.10 0.65 14 10 N -0.87 -22.65 13.05 55.49 0.72 -21.92 14 11 Si 0.94 19.07 29.55 -169.99 -5.02 14.04 14 12 H -0.27 -5.36 7.11 56.52 0.40 -4.96 14 13 H -0.28 -5.60 7.11 56.52 0.40 -5.20 14 14 H -0.27 -5.36 7.11 56.52 0.40 -4.96 14 15 N -0.61 -13.88 10.47 -13.87 -0.15 -14.03 14 16 C 0.34 6.84 12.28 -92.26 -1.13 5.71 14 17 N -0.62 -12.48 9.30 -13.44 -0.12 -12.60 14 18 H 0.08 1.15 8.14 -51.92 -0.42 0.73 14 19 H 0.09 0.93 8.14 -51.92 -0.42 0.51 14 20 H 0.08 1.15 8.14 -51.92 -0.42 0.73 14 21 H 0.13 2.95 6.06 -52.49 -0.32 2.64 14 22 H 0.41 10.56 8.02 -40.82 -0.33 10.23 14 23 H 0.28 6.82 8.31 -40.82 -0.34 6.48 14 24 H 0.18 2.77 8.06 -52.49 -0.42 2.34 14 LS Contribution 233.31 15.07 3.52 3.52 Total: -1.00 -27.09 233.31 -7.38 -34.47 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -1.77 Total: 10.82 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -2.05 Total: 2.64 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 0.39 Total: -61.40 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.04 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.44 Total: -4.09 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -27.09 -7.38 -34.47 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155530978.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.227 kcal (2) G-P(sol) polarization free energy of solvation -27.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds