Wall clock time and date at job start Sun Mar 29 2020 21:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76204 * 99.99917 * 2 1 4 4 C 1.39325 * 120.49318 * 180.02562 * 3 2 1 5 5 C 1.39152 * 118.24749 * 180.02562 * 4 3 2 6 6 N 1.38607 * 120.48855 * 179.97438 * 5 4 3 7 7 C 1.36939 * 120.00009 * 0.02562 * 6 5 4 8 8 H 1.08005 * 119.99985 * 359.97438 * 7 6 5 9 9 C 1.38837 * 119.99839 * 180.02562 * 7 6 5 10 10 N 1.31539 * 120.00513 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99992 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47119 * 59.99505 * 11 9 7 13 13 H 1.48500 * 109.47451 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46933 * 299.99758 * 11 9 7 15 15 N 1.33289 * 119.02364 * 359.97438 * 5 4 3 16 16 C 1.31694 * 120.89422 * 359.97438 * 15 5 4 17 17 N 1.31776 * 121.93838 * 0.02562 * 16 15 5 18 18 H 1.09000 * 109.47028 * 59.99834 * 1 2 3 19 19 H 1.08998 * 109.47008 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47503 * 300.00314 * 1 2 3 21 21 H 1.07999 * 120.87147 * 359.74576 * 4 3 2 22 22 H 0.96997 * 119.99956 * 179.97438 * 6 5 4 23 23 H 0.97003 * 120.00495 * 179.97438 * 10 9 7 24 24 H 1.07998 * 119.03248 * 179.97438 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.4210 2.2231 -0.0005 5 6 3.6087 3.6019 0.0000 6 7 4.8871 4.1375 0.0001 7 6 5.9769 3.3084 -0.0010 8 1 5.8403 2.2370 -0.0014 9 6 7.2574 3.8450 -0.0004 10 7 7.4238 5.1498 0.0006 11 14 8.7441 2.7139 -0.0011 12 1 8.7143 1.8579 -1.2142 13 1 9.9858 3.5284 -0.0010 14 1 8.7140 1.8561 1.2108 15 7 2.5411 4.3999 0.0005 16 6 1.3229 3.8995 0.0000 17 7 1.1029 2.6003 -0.0005 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 4.2646 1.5488 0.0032 22 1 5.0097 5.0997 0.0001 23 1 8.3185 5.5247 0.0014 24 1 0.4793 4.5739 0.0009 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155530978.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:27 Heat of formation + Delta-G solvation = 25.856385 kcal Electronic energy + Delta-G solvation = -11322.038359 eV Core-core repulsion = 9167.818900 eV Total energy + Delta-G solvation = -2154.219459 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.047 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.28346 -37.61315 -34.47593 -33.37352 -31.22432 -29.69209 -27.17074 -25.09824 -23.88788 -20.11667 -19.47850 -17.97332 -17.07200 -16.24191 -15.94313 -15.74465 -15.58801 -15.28216 -14.47409 -14.33974 -13.54729 -13.40465 -13.17472 -12.63797 -12.59162 -12.14826 -11.68293 -11.51677 -11.26896 -10.87027 -9.92582 -9.39849 -8.63196 -8.62802 -5.97207 0.30288 0.59373 0.61044 1.38448 1.41277 1.50160 1.53220 2.18056 2.81577 2.92859 3.32038 3.68027 4.12868 4.38846 4.44498 4.46935 4.76108 4.87387 5.03528 5.20049 5.50334 5.85055 6.18673 6.65627 7.16742 7.25420 7.71736 8.53757 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.042411 B = 0.008560 C = 0.007150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.049012 B = 3270.363568 C = 3915.268864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.081 6.081 3 C 0.175 3.825 4 C -0.304 4.304 5 C 0.372 3.628 6 N -0.529 5.529 7 C -0.331 4.331 8 H 0.111 0.889 9 C -0.015 4.015 10 N -0.914 5.914 11 Si 1.007 2.993 12 H -0.262 1.262 13 H -0.275 1.275 14 H -0.262 1.262 15 N -0.628 5.628 16 C 0.340 3.660 17 N -0.608 5.608 18 H 0.084 0.916 19 H 0.127 0.873 20 H 0.084 0.916 21 H 0.129 0.871 22 H 0.397 0.603 23 H 0.283 0.717 24 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.921 -8.123 0.003 11.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S 0.156 5.844 3 C -0.075 4.075 4 C -0.343 4.343 5 C 0.123 3.877 6 N -0.136 5.136 7 C -0.461 4.461 8 H 0.128 0.872 9 C -0.218 4.218 10 N -0.550 5.550 11 Si 0.828 3.172 12 H -0.187 1.187 13 H -0.200 1.200 14 H -0.187 1.187 15 N -0.358 5.358 16 C 0.046 3.954 17 N -0.337 5.337 18 H 0.103 0.897 19 H 0.145 0.855 20 H 0.103 0.897 21 H 0.146 0.854 22 H 0.232 0.768 23 H 0.092 0.908 24 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -7.476 -8.499 0.004 11.319 hybrid contribution 0.788 1.044 0.001 1.308 sum -6.688 -7.456 0.005 10.016 Atomic orbital electron populations 1.23412 0.91426 1.07212 1.06672 1.85474 1.10662 0.96890 1.91410 1.23142 0.91265 0.99648 0.93478 1.21326 0.97421 0.94952 1.20590 1.18509 0.86136 0.89394 0.93613 1.40854 1.01011 1.09114 1.62622 1.20072 0.84035 0.92086 1.49949 0.87171 1.26371 1.01904 0.98010 0.95466 1.69778 1.25582 1.12227 1.47453 0.84774 0.75419 0.77304 0.79701 1.18663 1.20016 1.18654 1.67876 0.99600 1.40524 1.27826 1.24947 0.92831 0.89975 0.87632 1.68638 1.32859 1.04042 1.28176 0.89661 0.85489 0.89655 0.85355 0.76830 0.90768 0.76450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.68 113.37 1.10 -1.56 14 2 S -0.08 -2.49 22.73 -56.49 -1.28 -3.78 14 3 C 0.17 6.96 7.00 84.75 0.59 7.55 14 4 C -0.30 -13.84 9.17 22.75 0.21 -13.63 14 5 C 0.37 18.25 7.67 132.93 1.02 19.27 14 6 N -0.53 -27.71 5.43 -188.85 -1.03 -28.73 14 7 C -0.33 -17.24 9.56 84.04 0.80 -16.44 14 8 H 0.11 5.47 5.73 -2.91 -0.02 5.45 14 9 C -0.02 -0.77 5.50 84.88 0.47 -0.30 14 10 N -0.91 -48.74 13.05 21.65 0.28 -48.46 14 11 Si 1.01 39.38 29.55 68.60 2.03 41.41 14 12 H -0.26 -9.89 7.11 99.48 0.71 -9.18 14 13 H -0.28 -10.48 7.11 99.48 0.71 -9.77 14 14 H -0.26 -9.88 7.11 99.48 0.71 -9.18 14 15 N -0.63 -28.47 10.47 -197.79 -2.07 -30.54 14 16 C 0.34 12.93 12.28 180.92 2.22 15.15 14 17 N -0.61 -23.07 9.30 -196.43 -1.83 -24.90 14 18 H 0.08 1.97 8.14 -2.40 -0.02 1.95 14 19 H 0.13 1.98 8.14 -2.40 -0.02 1.96 14 20 H 0.08 1.97 8.14 -2.40 -0.02 1.95 14 21 H 0.13 5.83 6.06 -2.91 -0.02 5.81 14 22 H 0.40 21.61 8.02 -92.71 -0.74 20.87 14 23 H 0.28 14.08 8.31 -92.71 -0.77 13.31 14 24 H 0.22 6.15 8.06 -2.91 -0.02 6.12 14 Total: -1.00 -58.66 233.31 3.00 -55.66 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.49 Total: 29.30 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 6.41 Total: 10.04 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -4.64 Total: -132.63 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Atomic # 16 Polarization: -2.49 SS G_CDS: -1.28 Total: -3.78 kcal Total: -58.66 3.00 -55.66 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155530978.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.515 kcal (2) G-P(sol) polarization free energy of solvation -58.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds