Wall clock time and date at job start Sun Mar 29 2020 21:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.76198 * 102.99935 * 2 1 4 4 C 1.39707 * 120.07208 * 179.97438 * 3 2 1 5 5 C 1.38265 * 117.97889 * 179.97438 * 4 3 2 6 6 C 1.39749 * 117.97838 * 0.02562 * 5 4 3 7 7 N 1.39007 * 120.07329 * 179.97438 * 6 5 4 8 8 C 1.36883 * 119.99799 * 0.02562 * 7 6 5 9 9 H 1.07996 * 119.99898 * 359.97438 * 8 7 6 10 10 C 1.38767 * 119.99714 * 179.97438 * 8 7 6 11 11 N 1.31602 * 120.00231 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99884 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47112 * 59.99828 * 12 10 8 14 14 H 1.48498 * 109.47092 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47028 * 299.99577 * 12 10 8 16 16 N 1.32411 * 119.85283 * 0.02562 * 6 5 4 17 17 N 1.28354 * 122.16668 * 359.97438 * 16 6 5 18 18 H 1.08995 * 109.46865 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46513 * 300.00014 * 1 2 3 20 20 H 1.09000 * 109.47042 * 59.99895 * 1 2 3 21 21 H 1.08002 * 121.00710 * 0.25338 * 4 3 2 22 22 H 1.08000 * 121.00531 * 180.02562 * 5 4 3 23 23 H 0.97002 * 119.99808 * 179.97438 * 7 6 5 24 24 H 0.96994 * 120.00536 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5459 2.1270 0.0005 5 6 3.8075 3.4847 0.0000 6 6 2.7197 4.3619 -0.0006 7 7 2.9326 5.7356 -0.0006 8 6 4.2089 6.2303 -0.0007 9 1 5.0504 5.5534 -0.0002 10 6 4.4215 7.6016 -0.0012 11 7 3.3960 8.4265 -0.0022 12 14 6.1632 8.2768 -0.0006 13 1 6.8784 7.8023 -1.2124 14 1 6.1187 9.7611 -0.0020 15 1 6.8770 7.8037 1.2126 16 7 1.4857 3.8818 0.0000 17 7 1.2429 2.6214 0.0006 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3632 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 4.3495 1.4054 -0.0031 22 1 4.8217 3.8558 -0.0001 23 1 2.1768 6.3435 -0.0013 24 1 3.5445 9.3850 -0.0023 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534569.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:24 Heat of formation + Delta-G solvation = 51.601234 kcal Electronic energy + Delta-G solvation = -11246.910811 eV Core-core repulsion = 9093.807732 eV Total energy + Delta-G solvation = -2153.103079 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.047 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.64885 -35.87093 -32.46850 -32.01501 -29.58174 -28.37112 -25.40634 -23.51488 -22.30703 -18.37469 -17.18698 -16.86961 -16.06247 -14.76149 -14.30500 -14.21516 -13.82306 -13.24935 -13.12301 -12.84729 -11.94280 -11.85124 -11.71931 -10.97384 -10.78603 -10.72972 -10.48865 -9.89063 -9.57030 -9.25950 -8.59732 -8.09332 -6.86615 -6.83078 -4.06529 1.89290 2.02567 2.11783 2.82584 3.01410 3.01484 3.03729 3.79364 4.40084 4.68724 4.96416 5.41163 5.51457 5.53122 5.66239 5.85460 5.99948 6.10483 6.57005 6.77208 6.98807 7.05254 7.46247 8.41369 8.91343 9.11253 9.90964 10.28259 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.083260 B = 0.006752 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.214944 B = 4145.636447 C = 4466.707021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.111 6.111 3 C -0.073 4.073 4 C -0.055 4.055 5 C -0.181 4.181 6 C 0.288 3.712 7 N -0.506 5.506 8 C -0.309 4.309 9 H 0.107 0.893 10 C 0.029 3.971 11 N -0.872 5.872 12 Si 0.941 3.059 13 H -0.268 1.268 14 H -0.278 1.278 15 H -0.268 1.268 16 N -0.343 5.343 17 N -0.194 5.194 18 H 0.093 0.907 19 H 0.081 0.919 20 H 0.081 0.919 21 H 0.130 0.870 22 H 0.140 0.860 23 H 0.409 0.591 24 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.060 -8.678 0.001 8.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S 0.118 5.882 3 C -0.336 4.336 4 C -0.086 4.086 5 C -0.217 4.217 6 C 0.040 3.960 7 N -0.112 5.112 8 C -0.440 4.440 9 H 0.125 0.875 10 C -0.178 4.178 11 N -0.506 5.506 12 Si 0.766 3.234 13 H -0.193 1.193 14 H -0.203 1.203 15 H -0.193 1.193 16 N -0.205 5.205 17 N -0.042 5.042 18 H 0.111 0.889 19 H 0.100 0.900 20 H 0.100 0.900 21 H 0.148 0.852 22 H 0.158 0.842 23 H 0.245 0.755 24 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.348 -8.752 0.001 8.759 hybrid contribution 1.234 1.560 -0.001 1.989 sum 1.582 -7.192 0.000 7.364 Atomic orbital electron populations 1.23282 0.94578 1.04967 1.06301 1.84729 1.07076 1.01529 1.94879 1.23324 0.94034 0.98002 1.18199 1.21359 0.95210 0.95542 0.96502 1.21457 0.99859 0.92225 1.08182 1.19818 0.91234 0.86971 0.98017 1.40801 1.09177 1.00761 1.60466 1.19767 0.83716 0.91591 1.48909 0.87519 1.25454 1.00568 0.95671 0.96130 1.69699 1.31119 1.04668 1.45115 0.85744 0.80178 0.78057 0.79418 1.19330 1.20330 1.19324 1.72582 1.17692 1.05338 1.24890 1.72793 1.28898 0.95950 1.06571 0.88860 0.89992 0.89988 0.85206 0.84235 0.75480 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 10.04 101.05 1.01 -0.64 14 2 S -0.11 -1.79 22.57 -107.50 -2.43 -4.22 14 3 C -0.07 -1.48 7.08 -16.74 -0.12 -1.60 14 4 C -0.06 -1.06 9.95 -39.02 -0.39 -1.45 14 5 C -0.18 -3.82 9.41 -39.01 -0.37 -4.19 14 6 C 0.29 6.88 7.71 -154.77 -1.19 5.68 14 7 N -0.51 -12.55 5.45 -11.02 -0.06 -12.61 14 8 C -0.31 -7.52 9.55 -15.10 -0.14 -7.67 14 9 H 0.11 2.41 5.70 -52.49 -0.30 2.11 14 10 C 0.03 0.70 5.50 -17.45 -0.10 0.60 14 11 N -0.87 -22.19 13.05 55.49 0.72 -21.47 14 12 Si 0.94 18.42 29.55 -169.99 -5.02 13.40 14 13 H -0.27 -5.16 7.11 56.52 0.40 -4.76 14 14 H -0.28 -5.44 7.11 56.52 0.40 -5.03 14 15 H -0.27 -5.16 7.11 56.52 0.40 -4.76 14 16 N -0.34 -8.36 11.53 31.27 0.36 -8.00 14 17 N -0.19 -4.36 10.59 31.51 0.33 -4.03 14 18 H 0.09 0.97 8.14 -51.93 -0.42 0.55 14 19 H 0.08 1.16 8.14 -51.92 -0.42 0.74 14 20 H 0.08 1.16 8.14 -51.92 -0.42 0.74 14 21 H 0.13 2.05 8.06 -52.49 -0.42 1.63 14 22 H 0.14 2.70 6.04 -52.49 -0.32 2.39 14 23 H 0.41 10.51 8.01 -40.82 -0.33 10.18 14 24 H 0.28 6.73 8.31 -40.82 -0.34 6.40 14 LS Contribution 233.87 15.07 3.52 3.52 Total: -1.00 -26.88 233.87 -5.63 -32.50 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -1.77 Total: 10.17 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.29 Total: -9.27 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 1.36 Total: -46.11 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.40 kcal Atomic # 16 Polarization: -1.79 SS G_CDS: -2.43 Total: -4.22 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -26.88 -5.63 -32.50 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534569.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.106 kcal (2) G-P(sol) polarization free energy of solvation -26.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds