Wall clock time and date at job start Sun Mar 29 2020 21:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76208 * 103.00062 * 2 1 4 4 C 1.39337 * 120.04460 * 180.02562 * 3 2 1 5 5 N 1.32023 * 120.07903 * 180.02562 * 4 3 2 6 6 C 1.32087 * 120.18874 * 359.97438 * 5 4 3 7 7 C 1.39214 * 120.08526 * 0.02562 * 6 5 4 8 8 N 1.38810 * 120.03984 * 179.97438 * 7 6 5 9 9 C 1.36895 * 120.00011 * 359.97438 * 8 7 6 10 10 H 1.08002 * 120.00320 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99798 * 179.72356 * 9 8 7 12 12 N 1.31564 * 120.00293 * 0.27486 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27659 * 11 9 8 14 14 H 1.48496 * 109.47491 * 59.99922 * 13 11 9 15 15 H 1.48504 * 109.47036 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46993 * 300.00028 * 13 11 9 17 17 N 1.32733 * 120.04066 * 0.27210 * 3 2 1 18 18 H 1.08996 * 109.46788 * 180.02562 * 1 2 3 19 19 H 1.09005 * 109.47205 * 300.00525 * 1 2 3 20 20 H 1.09000 * 109.46937 * 59.99982 * 1 2 3 21 21 H 1.07993 * 119.95855 * 0.04684 * 4 3 2 22 22 H 1.08000 * 119.96286 * 180.02562 * 6 5 4 23 23 H 0.97000 * 119.99686 * 179.97438 * 8 7 6 24 24 H 0.96996 * 120.00423 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5426 2.1253 -0.0005 5 7 3.8403 3.4115 0.0000 6 6 2.8778 4.3161 0.0005 7 6 1.5444 3.9163 0.0010 8 7 0.5336 4.8677 0.0021 9 6 0.8478 6.2001 0.0032 10 1 1.8821 6.5111 0.0027 11 6 -0.1630 7.1516 -0.0016 12 7 -1.4229 6.7729 -0.0016 13 14 0.2658 8.9697 -0.0079 14 1 1.0621 9.2864 -1.2207 15 1 -0.9833 9.7729 -0.0117 16 1 1.0594 9.2954 1.2043 17 7 1.2403 2.6229 0.0055 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 4.3324 1.3888 -0.0017 22 1 3.1256 5.3673 0.0005 23 1 -0.3953 4.5884 0.0021 24 1 -2.1292 7.4377 -0.0045 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534921.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:29 Heat of formation + Delta-G solvation = 42.107010 kcal Electronic energy + Delta-G solvation = -11355.625013 eV Core-core repulsion = 9202.110234 eV Total energy + Delta-G solvation = -2153.514779 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.047 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.67738 -35.76553 -33.11465 -32.08108 -28.81366 -28.57802 -25.30605 -23.67477 -22.17085 -18.44766 -17.43201 -16.22594 -15.75723 -15.35371 -14.54124 -14.14519 -13.81286 -13.71029 -13.12172 -12.44072 -12.16322 -11.70560 -11.64411 -10.89785 -10.66793 -10.58930 -10.48556 -10.30270 -10.23901 -9.20443 -8.13716 -7.80980 -6.88245 -6.86583 -4.07403 1.84454 1.95358 2.33142 2.64818 3.03707 3.04926 3.05857 3.81377 4.50474 4.67980 5.02704 5.38835 5.49937 5.50426 5.71944 5.93612 6.09283 6.37829 6.39327 7.00995 7.22842 7.52482 8.07786 8.49147 8.80959 8.98843 9.32590 10.28271 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.051941 B = 0.007992 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.946367 B = 3502.524794 C = 4026.322394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.102 6.102 3 C 0.144 3.856 4 C -0.085 4.085 5 N -0.391 5.391 6 C -0.041 4.041 7 C 0.320 3.680 8 N -0.508 5.508 9 C -0.307 4.307 10 H 0.110 0.890 11 C 0.029 3.971 12 N -0.874 5.874 13 Si 0.941 3.059 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.267 1.267 17 N -0.548 5.548 18 H 0.095 0.905 19 H 0.084 0.916 20 H 0.084 0.916 21 H 0.145 0.855 22 H 0.157 0.843 23 H 0.405 0.595 24 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.937 -5.817 -0.019 6.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S 0.133 5.867 3 C -0.113 4.113 4 C -0.251 4.251 5 N -0.103 5.103 6 C -0.219 4.219 7 C 0.069 3.931 8 N -0.112 5.112 9 C -0.437 4.437 10 H 0.128 0.872 11 C -0.178 4.178 12 N -0.509 5.509 13 Si 0.766 3.234 14 H -0.192 1.192 15 H -0.204 1.204 16 H -0.192 1.192 17 N -0.278 5.278 18 H 0.113 0.887 19 H 0.103 0.897 20 H 0.103 0.897 21 H 0.163 0.837 22 H 0.174 0.826 23 H 0.241 0.759 24 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.278 -6.376 -0.013 6.770 hybrid contribution -1.316 1.862 -0.008 2.280 sum 0.962 -4.514 -0.021 4.615 Atomic orbital electron populations 1.23326 0.94225 1.05092 1.06696 1.85079 1.07424 1.01690 1.92512 1.23356 0.93180 0.96862 0.97940 1.22142 0.93228 0.93086 1.16673 1.67924 1.35649 1.01298 1.05456 1.22607 0.87906 0.99493 1.11884 1.19061 0.89419 0.86973 0.97602 1.40823 1.06377 1.03542 1.60493 1.19813 0.95318 0.79906 1.48686 0.87237 1.25459 0.94545 1.01702 0.96054 1.69682 0.99292 1.36521 1.45389 0.85741 0.78242 0.79869 0.79568 1.19234 1.20419 1.19233 1.68036 1.34070 1.00446 1.25287 0.88675 0.89733 0.89742 0.83736 0.82617 0.75927 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 10.04 101.05 1.01 -0.74 14 2 S -0.10 -1.65 22.57 -107.50 -2.43 -4.08 14 3 C 0.14 2.97 7.00 -16.75 -0.12 2.85 14 4 C -0.08 -1.74 10.98 -17.06 -0.19 -1.92 14 5 N -0.39 -8.62 10.48 -12.64 -0.13 -8.75 14 6 C -0.04 -0.94 10.48 -17.08 -0.18 -1.12 14 7 C 0.32 7.60 7.63 -154.78 -1.18 6.41 14 8 N -0.51 -12.50 5.44 -11.08 -0.06 -12.56 14 9 C -0.31 -7.51 9.55 -15.08 -0.14 -7.65 14 10 H 0.11 2.52 5.66 -52.49 -0.30 2.22 14 11 C 0.03 0.70 5.50 -17.45 -0.10 0.61 14 12 N -0.87 -22.18 13.05 55.49 0.72 -21.45 14 13 Si 0.94 18.58 29.55 -169.99 -5.02 13.56 14 14 H -0.27 -5.20 7.11 56.52 0.40 -4.80 14 15 H -0.28 -5.49 7.11 56.52 0.40 -5.08 14 16 H -0.27 -5.20 7.11 56.52 0.40 -4.80 14 17 N -0.55 -12.39 9.63 -11.08 -0.11 -12.50 14 18 H 0.09 1.03 8.14 -51.93 -0.42 0.61 14 19 H 0.08 1.27 8.14 -51.92 -0.42 0.85 14 20 H 0.08 1.27 8.14 -51.92 -0.42 0.84 14 21 H 0.15 2.57 8.06 -52.49 -0.42 2.14 14 22 H 0.16 3.35 5.94 -52.49 -0.31 3.04 14 23 H 0.40 10.25 8.02 -40.82 -0.33 9.92 14 24 H 0.28 6.71 8.31 -40.82 -0.34 6.37 14 LS Contribution 233.62 15.07 3.52 3.52 Total: -1.00 -26.36 233.62 -6.16 -32.51 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -1.76 Total: 11.31 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -0.89 Total: -1.57 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.42 Total: -55.26 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.43 Total: -4.08 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -26.36 -6.16 -32.51 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534921.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.622 kcal (2) G-P(sol) polarization free energy of solvation -26.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds