Wall clock time and date at job start Sun Mar 29 2020 21:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76208 * 103.00062 * 2 1 4 4 C 1.39337 * 120.04460 * 180.02562 * 3 2 1 5 5 N 1.32023 * 120.07903 * 180.02562 * 4 3 2 6 6 C 1.32087 * 120.18874 * 359.97438 * 5 4 3 7 7 C 1.39214 * 120.08526 * 0.02562 * 6 5 4 8 8 N 1.38810 * 120.03984 * 179.97438 * 7 6 5 9 9 C 1.36895 * 120.00011 * 359.97438 * 8 7 6 10 10 H 1.08002 * 120.00320 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99798 * 179.72356 * 9 8 7 12 12 N 1.31564 * 120.00293 * 0.27486 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27659 * 11 9 8 14 14 H 1.48496 * 109.47491 * 59.99922 * 13 11 9 15 15 H 1.48504 * 109.47036 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46993 * 300.00028 * 13 11 9 17 17 N 1.32733 * 120.04066 * 0.27210 * 3 2 1 18 18 H 1.08996 * 109.46788 * 180.02562 * 1 2 3 19 19 H 1.09005 * 109.47205 * 300.00525 * 1 2 3 20 20 H 1.09000 * 109.46937 * 59.99982 * 1 2 3 21 21 H 1.07993 * 119.95855 * 0.04684 * 4 3 2 22 22 H 1.08000 * 119.96286 * 180.02562 * 6 5 4 23 23 H 0.97000 * 119.99686 * 179.97438 * 8 7 6 24 24 H 0.96996 * 120.00423 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5426 2.1253 -0.0005 5 7 3.8403 3.4115 0.0000 6 6 2.8778 4.3161 0.0005 7 6 1.5444 3.9163 0.0010 8 7 0.5336 4.8677 0.0021 9 6 0.8478 6.2001 0.0032 10 1 1.8821 6.5111 0.0027 11 6 -0.1630 7.1516 -0.0016 12 7 -1.4229 6.7729 -0.0016 13 14 0.2658 8.9697 -0.0079 14 1 1.0621 9.2864 -1.2207 15 1 -0.9833 9.7729 -0.0117 16 1 1.0594 9.2954 1.2043 17 7 1.2403 2.6229 0.0055 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 4.3324 1.3888 -0.0017 22 1 3.1256 5.3673 0.0005 23 1 -0.3953 4.5884 0.0021 24 1 -2.1292 7.4377 -0.0045 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534921.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:28 Heat of formation + Delta-G solvation = 25.360201 kcal Electronic energy + Delta-G solvation = -11356.351209 eV Core-core repulsion = 9202.110234 eV Total energy + Delta-G solvation = -2154.240975 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.047 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.41079 -37.53612 -34.85573 -33.85619 -30.54758 -29.75074 -27.10797 -25.40445 -23.89550 -20.22912 -19.09230 -17.95771 -17.33817 -17.03180 -16.19088 -15.84526 -15.51070 -15.10031 -14.38954 -13.91106 -13.59823 -13.34922 -13.33253 -12.52698 -12.41726 -12.23029 -12.15857 -11.98098 -11.58432 -10.93577 -9.85896 -9.45276 -8.65105 -8.39187 -5.94494 0.14052 0.54178 0.58927 1.31344 1.43465 1.50733 1.54523 2.18199 2.75135 2.91082 3.24129 3.82437 4.02313 4.14712 4.32283 4.39348 4.66516 4.72512 4.95087 5.19140 5.47063 5.77559 6.32129 6.67908 7.05338 7.19326 7.51093 8.51562 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.051941 B = 0.007992 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.946367 B = 3502.524794 C = 4026.322394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.054 6.054 3 C 0.123 3.877 4 C -0.078 4.078 5 N -0.397 5.397 6 C -0.062 4.062 7 C 0.311 3.689 8 N -0.527 5.527 9 C -0.328 4.328 10 H 0.118 0.882 11 C -0.015 4.015 12 N -0.913 5.913 13 Si 1.008 2.992 14 H -0.261 1.261 15 H -0.278 1.278 16 H -0.261 1.261 17 N -0.558 5.558 18 H 0.135 0.865 19 H 0.074 0.926 20 H 0.074 0.926 21 H 0.177 0.823 22 H 0.161 0.839 23 H 0.395 0.605 24 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.781 -6.980 -0.023 7.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.181 5.819 3 C -0.134 4.134 4 C -0.246 4.246 5 N -0.110 5.110 6 C -0.237 4.237 7 C 0.063 3.937 8 N -0.132 5.132 9 C -0.458 4.458 10 H 0.135 0.865 11 C -0.217 4.217 12 N -0.549 5.549 13 Si 0.829 3.171 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.186 1.186 17 N -0.289 5.289 18 H 0.153 0.847 19 H 0.094 0.906 20 H 0.094 0.906 21 H 0.194 0.806 22 H 0.178 0.822 23 H 0.230 0.770 24 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.158 -7.551 -0.017 8.185 hybrid contribution -1.483 1.859 -0.007 2.378 sum 1.675 -5.692 -0.024 5.934 Atomic orbital electron populations 1.23476 0.92834 1.07429 1.05794 1.84914 1.08791 0.96819 1.91363 1.24140 0.93327 0.99266 0.96621 1.22795 0.94342 0.93197 1.14289 1.67949 1.35547 1.02024 1.05474 1.22662 0.87744 1.00052 1.13263 1.19338 0.89738 0.87572 0.97089 1.40824 1.05933 1.03849 1.62635 1.20159 0.95964 0.80229 1.49428 0.86493 1.26375 0.94237 1.05680 0.95434 1.69782 1.00206 1.37738 1.47221 0.84746 0.77941 0.74595 0.79779 1.18575 1.20307 1.18573 1.68141 1.35019 1.00361 1.25383 0.84665 0.90645 0.90645 0.80579 0.82224 0.77023 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 10.04 113.37 1.14 -2.09 14 2 S -0.05 -1.59 22.57 -56.49 -1.27 -2.86 14 3 C 0.12 4.85 7.00 84.82 0.59 5.45 14 4 C -0.08 -3.04 10.98 84.93 0.93 -2.11 14 5 N -0.40 -17.06 10.48 -193.90 -2.03 -19.09 14 6 C -0.06 -2.83 10.48 84.89 0.89 -1.94 14 7 C 0.31 14.93 7.63 133.01 1.01 15.95 14 8 N -0.53 -26.66 5.44 -188.98 -1.03 -27.68 14 9 C -0.33 -16.41 9.55 84.04 0.80 -15.61 14 10 H 0.12 5.47 5.66 -2.91 -0.02 5.45 14 11 C -0.02 -0.73 5.50 84.87 0.47 -0.27 14 12 N -0.91 -47.50 13.05 21.65 0.28 -47.22 14 13 Si 1.01 38.21 29.55 68.60 2.03 40.24 14 14 H -0.26 -9.54 7.11 99.48 0.71 -8.83 14 15 H -0.28 -10.37 7.11 99.48 0.71 -9.66 14 16 H -0.26 -9.54 7.11 99.48 0.71 -8.83 14 17 N -0.56 -24.99 9.63 -188.98 -1.82 -26.81 14 18 H 0.14 2.39 8.14 -2.39 -0.02 2.37 14 19 H 0.07 2.11 8.14 -2.39 -0.02 2.10 14 20 H 0.07 2.11 8.14 -2.39 -0.02 2.09 14 21 H 0.18 5.63 8.06 -2.91 -0.02 5.60 14 22 H 0.16 6.97 5.94 -2.91 -0.02 6.95 14 23 H 0.40 20.83 8.02 -92.71 -0.74 20.09 14 24 H 0.28 13.78 8.31 -92.71 -0.77 13.00 14 Total: -1.00 -56.20 233.62 2.48 -53.72 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.49 Total: 30.33 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 5.84 Total: -0.62 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -4.60 Total: -120.80 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -1.27 Total: -2.86 kcal Total: -56.20 2.48 -53.72 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534921.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.080 kcal (2) G-P(sol) polarization free energy of solvation -56.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds