Wall clock time and date at job start Sun Mar 29 2020 21:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37100 * 120.00101 * 2 1 4 4 H 1.07993 * 120.00230 * 204.51396 * 3 2 1 5 5 C 1.38952 * 119.99773 * 24.52124 * 3 2 1 6 6 N 1.31408 * 120.00276 * 12.45862 * 5 3 2 7 7 Si 1.86803 * 119.99959 * 192.46574 * 5 3 2 8 8 H 1.48497 * 109.46981 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47474 * 119.99589 * 7 5 3 10 10 H 1.48505 * 109.46836 * 239.99826 * 7 5 3 11 11 C 1.34776 * 120.00091 * 179.97438 * 2 1 3 12 12 O 1.21295 * 120.00145 * 180.02562 * 11 2 1 13 13 C 1.50697 * 119.99985 * 0.02562 * 11 2 1 14 14 H 1.08998 * 115.51709 * 325.58355 * 13 11 2 15 15 C 1.53008 * 117.41100 * 110.94341 * 13 11 2 16 16 H 1.09001 * 119.52340 * 355.92442 * 15 13 11 17 17 C 1.54377 * 118.12995 * 199.33169 * 15 13 11 18 18 N 1.48557 * 104.59267 * 272.77173 * 17 15 13 19 19 C 1.48559 * 104.22676 * 39.47957 * 18 17 15 20 20 C 1.53003 * 117.44414 * 180.15824 * 13 11 2 21 21 H 1.08994 * 119.52508 * 5.68853 * 20 13 11 22 22 H 1.09001 * 109.47218 * 265.72747 * 1 2 3 23 23 H 1.08995 * 109.46748 * 25.72372 * 1 2 3 24 24 H 1.08997 * 109.46998 * 145.72283 * 1 2 3 25 25 H 0.97003 * 120.00313 * 180.02562 * 6 5 3 26 26 H 1.08994 * 110.41378 * 153.98875 * 17 15 13 27 27 H 1.09006 * 110.51218 * 31.59910 * 17 15 13 28 28 H 1.00907 * 110.99911 * 279.92257 * 18 17 15 29 29 H 1.08991 * 110.41626 * 201.73880 * 19 18 17 30 30 H 1.09003 * 110.51072 * 79.34596 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1575 1.2295 -0.3880 5 6 1.5498 2.3364 0.4994 6 7 0.4350 2.2481 1.1896 7 14 2.3267 4.0067 0.1897 8 1 3.5681 3.8351 -0.6070 9 1 1.3731 4.8653 -0.5577 10 1 2.6569 4.6474 1.4881 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3855 -2.4723 0.0005 14 1 0.4477 -2.4731 0.5561 15 6 1.4542 -3.3253 -1.2678 16 1 1.9788 -2.9439 -2.1439 17 6 0.3690 -4.4025 -1.4802 18 7 0.8932 -5.6046 -0.7822 19 6 1.5160 -5.0662 0.4544 20 6 2.2088 -3.7619 0.0049 21 1 3.2930 -3.7066 0.1018 22 1 -0.3634 -0.0766 1.0248 23 1 -0.3633 0.9258 -0.4460 24 1 -0.3633 -0.8492 -0.5788 25 1 0.0153 3.0504 1.5379 26 1 0.2387 -4.6066 -2.5429 27 1 -0.5750 -4.0865 -1.0361 28 1 1.5747 -6.0845 -1.3509 29 1 2.2492 -5.7699 0.8482 30 1 0.7540 -4.8530 1.2042 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160583866.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:18 Heat of formation + Delta-G solvation = 8.692570 kcal Electronic energy + Delta-G solvation = -13956.583426 eV Core-core repulsion = 11560.125823 eV Total energy + Delta-G solvation = -2396.457604 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.88753 -37.72461 -34.67851 -32.47040 -31.50250 -28.24194 -26.49781 -25.14911 -23.40954 -21.37895 -19.78040 -18.71871 -16.96084 -16.56689 -15.87318 -14.87443 -14.31817 -14.02229 -13.73309 -13.63505 -13.06751 -12.22187 -11.98849 -11.72141 -11.55737 -11.37372 -11.24665 -11.14835 -10.88267 -10.36700 -10.32958 -9.70745 -9.61345 -9.02510 -8.86816 -8.35048 -7.66757 -6.33994 -3.90193 3.12032 3.24276 3.31297 3.46363 4.08853 4.23849 4.34407 4.63763 5.00472 5.13218 5.19863 5.30196 5.33217 5.50812 5.73184 5.88361 5.94206 6.00047 6.04224 6.35951 6.42761 6.52487 6.60980 6.85520 7.19614 7.32172 7.55069 8.13811 8.47995 9.17351 9.41331 9.98697 10.70955 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.067923 B = 0.007643 C = 0.007303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.131132 B = 3662.467437 C = 3833.268081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.440 5.440 3 C -0.307 4.307 4 H 0.098 0.902 5 C 0.030 3.970 6 N -0.881 5.881 7 Si 0.927 3.073 8 H -0.268 1.268 9 H -0.280 1.280 10 H -0.281 1.281 11 C 0.472 3.528 12 O -0.590 6.590 13 C -0.122 4.122 14 H 0.110 0.890 15 C -0.180 4.180 16 H 0.112 0.888 17 C 0.068 3.932 18 N -0.667 5.667 19 C 0.066 3.934 20 C -0.172 4.172 21 H 0.121 0.879 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.028 0.972 25 H 0.267 0.733 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.336 0.664 29 H 0.077 0.923 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.824 -9.235 -3.375 10.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.158 5.158 3 C -0.435 4.435 4 H 0.116 0.884 5 C -0.173 4.173 6 N -0.520 5.520 7 Si 0.753 3.247 8 H -0.192 1.192 9 H -0.206 1.206 10 H -0.207 1.207 11 C 0.259 3.741 12 O -0.476 6.476 13 C -0.144 4.144 14 H 0.128 0.872 15 C -0.201 4.201 16 H 0.130 0.870 17 C -0.062 4.062 18 N -0.293 5.293 19 C -0.063 4.063 20 C -0.192 4.192 21 H 0.139 0.861 22 H 0.069 0.931 23 H 0.093 0.907 24 H 0.046 0.954 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.151 0.849 29 H 0.096 0.904 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.042 -9.356 -2.992 10.283 hybrid contribution 0.992 1.516 -0.322 1.840 sum -2.050 -7.841 -3.314 8.755 Atomic orbital electron populations 1.21469 0.81137 0.99956 1.00530 1.43496 1.05559 1.04524 1.62222 1.19704 1.00711 0.84132 1.38920 0.88447 1.25366 0.96626 1.00195 0.95117 1.70005 1.19158 1.29597 1.33236 0.85857 0.79193 0.81377 0.78252 1.19225 1.20597 1.20679 1.19152 0.87341 0.83834 0.83735 1.90500 1.13922 1.86980 1.56160 1.22347 1.00638 0.91318 1.00112 0.87238 1.24134 1.01488 1.01988 0.92500 0.86979 1.22579 0.97089 0.87545 0.98942 1.63564 1.36528 1.22341 1.06842 1.22594 0.97348 0.92946 0.93449 1.24085 1.00003 0.93838 1.01302 0.86125 0.93093 0.90729 0.95377 0.92250 0.90459 0.89923 0.84945 0.90417 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.58 8.17 59.85 0.49 3.06 16 2 N -0.44 -11.62 3.01 -122.20 -0.37 -11.99 16 3 C -0.31 -8.75 9.24 -14.93 -0.14 -8.88 16 4 H 0.10 2.91 7.45 -52.49 -0.39 2.52 16 5 C 0.03 0.81 5.05 -17.47 -0.09 0.72 16 6 N -0.88 -23.79 10.83 55.50 0.60 -23.19 16 7 Si 0.93 20.94 29.57 -169.99 -5.03 15.91 16 8 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 11 C 0.47 11.92 7.41 -10.99 -0.08 11.84 16 12 O -0.59 -16.94 16.05 5.54 0.09 -16.85 16 13 C -0.12 -2.36 4.37 -91.77 -0.40 -2.76 16 14 H 0.11 1.98 7.34 -51.93 -0.38 1.60 16 15 C -0.18 -2.91 6.82 -89.23 -0.61 -3.52 16 16 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 17 C 0.07 0.87 7.27 -2.19 -0.02 0.86 16 18 N -0.67 -8.21 7.62 -109.67 -0.84 -9.04 16 19 C 0.07 0.87 7.27 -2.18 -0.02 0.86 16 20 C -0.17 -2.87 6.57 -89.23 -0.59 -3.45 16 21 H 0.12 2.22 7.80 -51.93 -0.41 1.81 16 22 H 0.05 1.19 7.83 -51.93 -0.41 0.78 16 23 H 0.07 1.79 6.80 -51.93 -0.35 1.43 16 24 H 0.03 0.54 6.89 -51.93 -0.36 0.18 16 25 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.34 3.61 8.92 -39.29 -0.35 3.26 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 252.62 15.07 3.81 3.81 Total: -1.00 -31.17 252.62 -7.07 -38.24 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -3.89 Total: 4.39 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.45 Total: -1.28 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -0.60 Total: -44.22 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: 0.09 Total: -16.85 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.17 -7.07 -38.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160583866.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.934 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds