Wall clock time and date at job start Sun Mar 29 2020 21:41:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.37100 * 120.00101 * 2 1
4 4 H 1.07993 * 120.00230 * 204.51396 * 3 2 1
5 5 C 1.38952 * 119.99773 * 24.52124 * 3 2 1
6 6 N 1.31408 * 120.00276 * 12.45862 * 5 3 2
7 7 Si 1.86803 * 119.99959 * 192.46574 * 5 3 2
8 8 H 1.48497 * 109.46981 * 359.97438 * 7 5 3
9 9 H 1.48497 * 109.47474 * 119.99589 * 7 5 3
10 10 H 1.48505 * 109.46836 * 239.99826 * 7 5 3
11 11 C 1.34776 * 120.00091 * 179.97438 * 2 1 3
12 12 O 1.21295 * 120.00145 * 180.02562 * 11 2 1
13 13 C 1.50697 * 119.99985 * 0.02562 * 11 2 1
14 14 H 1.08998 * 115.51709 * 325.58355 * 13 11 2
15 15 C 1.53008 * 117.41100 * 110.94341 * 13 11 2
16 16 H 1.09001 * 119.52340 * 355.92442 * 15 13 11
17 17 C 1.54377 * 118.12995 * 199.33169 * 15 13 11
18 18 N 1.48557 * 104.59267 * 272.77173 * 17 15 13
19 19 C 1.48559 * 104.22676 * 39.47957 * 18 17 15
20 20 C 1.53003 * 117.44414 * 180.15824 * 13 11 2
21 21 H 1.08994 * 119.52508 * 5.68853 * 20 13 11
22 22 H 1.09001 * 109.47218 * 265.72747 * 1 2 3
23 23 H 1.08995 * 109.46748 * 25.72372 * 1 2 3
24 24 H 1.08997 * 109.46998 * 145.72283 * 1 2 3
25 25 H 0.97003 * 120.00313 * 180.02562 * 6 5 3
26 26 H 1.08994 * 110.41378 * 153.98875 * 17 15 13
27 27 H 1.09006 * 110.51218 * 31.59910 * 17 15 13
28 28 H 1.00907 * 110.99911 * 279.92257 * 18 17 15
29 29 H 1.08991 * 110.41626 * 201.73880 * 19 18 17
30 30 H 1.09003 * 110.51072 * 79.34596 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1505 1.1873 0.0000
4 1 3.1575 1.2295 -0.3880
5 6 1.5498 2.3364 0.4994
6 7 0.4350 2.2481 1.1896
7 14 2.3267 4.0067 0.1897
8 1 3.5681 3.8351 -0.6070
9 1 1.3731 4.8653 -0.5577
10 1 2.6569 4.6474 1.4881
11 6 2.1389 -1.1672 0.0005
12 8 3.3519 -1.1672 0.0010
13 6 1.3855 -2.4723 0.0005
14 1 0.4477 -2.4731 0.5561
15 6 1.4542 -3.3253 -1.2678
16 1 1.9788 -2.9439 -2.1439
17 6 0.3690 -4.4025 -1.4802
18 7 0.8932 -5.6046 -0.7822
19 6 1.5160 -5.0662 0.4544
20 6 2.2088 -3.7619 0.0049
21 1 3.2930 -3.7066 0.1018
22 1 -0.3634 -0.0766 1.0248
23 1 -0.3633 0.9258 -0.4460
24 1 -0.3633 -0.8492 -0.5788
25 1 0.0153 3.0504 1.5379
26 1 0.2387 -4.6066 -2.5429
27 1 -0.5750 -4.0865 -1.0361
28 1 1.5747 -6.0845 -1.3509
29 1 2.2492 -5.7699 0.8482
30 1 0.7540 -4.8530 1.2042
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001160583866.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:41:18
Heat of formation + Delta-G solvation = 8.692570 kcal
Electronic energy + Delta-G solvation = -13956.583426 eV
Core-core repulsion = 11560.125823 eV
Total energy + Delta-G solvation = -2396.457604 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 210.111 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-39.88753 -37.72461 -34.67851 -32.47040 -31.50250 -28.24194 -26.49781 -25.14911
-23.40954 -21.37895 -19.78040 -18.71871 -16.96084 -16.56689 -15.87318 -14.87443
-14.31817 -14.02229 -13.73309 -13.63505 -13.06751 -12.22187 -11.98849 -11.72141
-11.55737 -11.37372 -11.24665 -11.14835 -10.88267 -10.36700 -10.32958 -9.70745
-9.61345 -9.02510 -8.86816 -8.35048 -7.66757 -6.33994 -3.90193 3.12032
3.24276 3.31297 3.46363 4.08853 4.23849 4.34407 4.63763 5.00472
5.13218 5.19863 5.30196 5.33217 5.50812 5.73184 5.88361 5.94206
6.00047 6.04224 6.35951 6.42761 6.52487 6.60980 6.85520 7.19614
7.32172 7.55069 8.13811 8.47995 9.17351 9.41331 9.98697 10.70955
Molecular weight = 210.11amu
Principal moments of inertia in cm(-1)
A = 0.067923 B = 0.007643 C = 0.007303
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 412.131132 B = 3662.467437 C = 3833.268081
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.113 3.887
2 N -0.440 5.440
3 C -0.307 4.307
4 H 0.098 0.902
5 C 0.030 3.970
6 N -0.881 5.881
7 Si 0.927 3.073
8 H -0.268 1.268
9 H -0.280 1.280
10 H -0.281 1.281
11 C 0.472 3.528
12 O -0.590 6.590
13 C -0.122 4.122
14 H 0.110 0.890
15 C -0.180 4.180
16 H 0.112 0.888
17 C 0.068 3.932
18 N -0.667 5.667
19 C 0.066 3.934
20 C -0.172 4.172
21 H 0.121 0.879
22 H 0.051 0.949
23 H 0.074 0.926
24 H 0.028 0.972
25 H 0.267 0.733
26 H 0.077 0.923
27 H 0.082 0.918
28 H 0.336 0.664
29 H 0.077 0.923
30 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.824 -9.235 -3.375 10.229
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.031 4.031
2 N -0.158 5.158
3 C -0.435 4.435
4 H 0.116 0.884
5 C -0.173 4.173
6 N -0.520 5.520
7 Si 0.753 3.247
8 H -0.192 1.192
9 H -0.206 1.206
10 H -0.207 1.207
11 C 0.259 3.741
12 O -0.476 6.476
13 C -0.144 4.144
14 H 0.128 0.872
15 C -0.201 4.201
16 H 0.130 0.870
17 C -0.062 4.062
18 N -0.293 5.293
19 C -0.063 4.063
20 C -0.192 4.192
21 H 0.139 0.861
22 H 0.069 0.931
23 H 0.093 0.907
24 H 0.046 0.954
25 H 0.078 0.922
26 H 0.095 0.905
27 H 0.101 0.899
28 H 0.151 0.849
29 H 0.096 0.904
30 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -3.042 -9.356 -2.992 10.283
hybrid contribution 0.992 1.516 -0.322 1.840
sum -2.050 -7.841 -3.314 8.755
Atomic orbital electron populations
1.21469 0.81137 0.99956 1.00530 1.43496 1.05559 1.04524 1.62222
1.19704 1.00711 0.84132 1.38920 0.88447 1.25366 0.96626 1.00195
0.95117 1.70005 1.19158 1.29597 1.33236 0.85857 0.79193 0.81377
0.78252 1.19225 1.20597 1.20679 1.19152 0.87341 0.83834 0.83735
1.90500 1.13922 1.86980 1.56160 1.22347 1.00638 0.91318 1.00112
0.87238 1.24134 1.01488 1.01988 0.92500 0.86979 1.22579 0.97089
0.87545 0.98942 1.63564 1.36528 1.22341 1.06842 1.22594 0.97348
0.92946 0.93449 1.24085 1.00003 0.93838 1.01302 0.86125 0.93093
0.90729 0.95377 0.92250 0.90459 0.89923 0.84945 0.90417 0.90033
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 2.58 8.17 59.85 0.49 3.06 16
2 N -0.44 -11.62 3.01 -122.20 -0.37 -11.99 16
3 C -0.31 -8.75 9.24 -14.93 -0.14 -8.88 16
4 H 0.10 2.91 7.45 -52.49 -0.39 2.52 16
5 C 0.03 0.81 5.05 -17.47 -0.09 0.72 16
6 N -0.88 -23.79 10.83 55.50 0.60 -23.19 16
7 Si 0.93 20.94 29.57 -169.99 -5.03 15.91 16
8 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16
9 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16
10 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16
11 C 0.47 11.92 7.41 -10.99 -0.08 11.84 16
12 O -0.59 -16.94 16.05 5.54 0.09 -16.85 16
13 C -0.12 -2.36 4.37 -91.77 -0.40 -2.76 16
14 H 0.11 1.98 7.34 -51.93 -0.38 1.60 16
15 C -0.18 -2.91 6.82 -89.23 -0.61 -3.52 16
16 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16
17 C 0.07 0.87 7.27 -2.19 -0.02 0.86 16
18 N -0.67 -8.21 7.62 -109.67 -0.84 -9.04 16
19 C 0.07 0.87 7.27 -2.18 -0.02 0.86 16
20 C -0.17 -2.87 6.57 -89.23 -0.59 -3.45 16
21 H 0.12 2.22 7.80 -51.93 -0.41 1.81 16
22 H 0.05 1.19 7.83 -51.93 -0.41 0.78 16
23 H 0.07 1.79 6.80 -51.93 -0.35 1.43 16
24 H 0.03 0.54 6.89 -51.93 -0.36 0.18 16
25 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16
26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16
28 H 0.34 3.61 8.92 -39.29 -0.35 3.26 16
29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16
30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16
LS Contribution 252.62 15.07 3.81 3.81
Total: -1.00 -31.17 252.62 -7.07 -38.24
By element:
Atomic # 1 Polarization: 8.29 SS G_CDS: -3.89 Total: 4.39 kcal
Atomic # 6 Polarization: 0.16 SS G_CDS: -1.45 Total: -1.28 kcal
Atomic # 7 Polarization: -43.62 SS G_CDS: -0.60 Total: -44.22 kcal
Atomic # 8 Polarization: -16.94 SS G_CDS: 0.09 Total: -16.85 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal
Total LS contribution 3.81 Total: 3.81 kcal
Total: -31.17 -7.07 -38.24 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001160583866.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.934 kcal
(2) G-P(sol) polarization free energy of solvation -31.168 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.766 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.693 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds