Wall clock time and date at job start Sun Mar 29 2020 21:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37100 * 120.00101 * 2 1 4 4 H 1.07993 * 120.00230 * 204.51396 * 3 2 1 5 5 C 1.38952 * 119.99773 * 24.52124 * 3 2 1 6 6 N 1.31408 * 120.00276 * 12.45862 * 5 3 2 7 7 Si 1.86803 * 119.99959 * 192.46574 * 5 3 2 8 8 H 1.48497 * 109.46981 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47474 * 119.99589 * 7 5 3 10 10 H 1.48505 * 109.46836 * 239.99826 * 7 5 3 11 11 C 1.34776 * 120.00091 * 179.97438 * 2 1 3 12 12 O 1.21295 * 120.00145 * 180.02562 * 11 2 1 13 13 C 1.50697 * 119.99985 * 0.02562 * 11 2 1 14 14 H 1.08998 * 115.51709 * 325.58355 * 13 11 2 15 15 C 1.53008 * 117.41100 * 110.94341 * 13 11 2 16 16 H 1.09001 * 119.52340 * 355.92442 * 15 13 11 17 17 C 1.54377 * 118.12995 * 199.33169 * 15 13 11 18 18 N 1.48557 * 104.59267 * 272.77173 * 17 15 13 19 19 C 1.48559 * 104.22676 * 39.47957 * 18 17 15 20 20 C 1.53003 * 117.44414 * 180.15824 * 13 11 2 21 21 H 1.08994 * 119.52508 * 5.68853 * 20 13 11 22 22 H 1.09001 * 109.47218 * 265.72747 * 1 2 3 23 23 H 1.08995 * 109.46748 * 25.72372 * 1 2 3 24 24 H 1.08997 * 109.46998 * 145.72283 * 1 2 3 25 25 H 0.97003 * 120.00313 * 180.02562 * 6 5 3 26 26 H 1.08994 * 110.41378 * 153.98875 * 17 15 13 27 27 H 1.09006 * 110.51218 * 31.59910 * 17 15 13 28 28 H 1.00907 * 110.99911 * 279.92257 * 18 17 15 29 29 H 1.08991 * 110.41626 * 201.73880 * 19 18 17 30 30 H 1.09003 * 110.51072 * 79.34596 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1575 1.2295 -0.3880 5 6 1.5498 2.3364 0.4994 6 7 0.4350 2.2481 1.1896 7 14 2.3267 4.0067 0.1897 8 1 3.5681 3.8351 -0.6070 9 1 1.3731 4.8653 -0.5577 10 1 2.6569 4.6474 1.4881 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3855 -2.4723 0.0005 14 1 0.4477 -2.4731 0.5561 15 6 1.4542 -3.3253 -1.2678 16 1 1.9788 -2.9439 -2.1439 17 6 0.3690 -4.4025 -1.4802 18 7 0.8932 -5.6046 -0.7822 19 6 1.5160 -5.0662 0.4544 20 6 2.2088 -3.7619 0.0049 21 1 3.2930 -3.7066 0.1018 22 1 -0.3634 -0.0766 1.0248 23 1 -0.3633 0.9258 -0.4460 24 1 -0.3633 -0.8492 -0.5788 25 1 0.0153 3.0504 1.5379 26 1 0.2387 -4.6066 -2.5429 27 1 -0.5750 -4.0865 -1.0361 28 1 1.5747 -6.0845 -1.3509 29 1 2.2492 -5.7699 0.8482 30 1 0.7540 -4.8530 1.2042 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160583866.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:18 Heat of formation + Delta-G solvation = -14.149569 kcal Electronic energy + Delta-G solvation = -13957.573936 eV Core-core repulsion = 11560.125823 eV Total energy + Delta-G solvation = -2397.448113 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.34906 -39.47136 -36.71515 -33.94676 -33.39081 -29.32775 -28.46107 -26.98109 -24.99251 -22.69651 -21.03814 -20.43437 -18.98648 -18.18817 -17.39818 -16.68988 -16.01988 -15.82177 -15.31757 -14.76683 -14.69632 -13.95798 -13.55783 -13.33866 -13.16230 -12.95303 -12.73014 -12.67911 -12.46268 -12.36212 -12.13941 -11.11737 -11.08665 -10.91725 -10.50501 -9.77270 -9.72591 -8.39965 -6.06104 1.31485 1.38035 1.52437 1.75007 2.23308 2.64186 2.90891 3.07819 3.34219 3.72918 3.82287 3.96512 4.03316 4.20031 4.32449 4.60383 4.65514 4.73453 4.96095 4.97011 4.98372 5.04927 5.20376 5.30645 5.38724 5.57870 6.04640 6.41801 6.42732 7.09920 7.39747 7.96914 8.63602 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.067923 B = 0.007643 C = 0.007303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.131132 B = 3662.467437 C = 3833.268081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.457 5.457 3 C -0.350 4.350 4 H 0.069 0.931 5 C -0.002 4.002 6 N -0.895 5.895 7 Si 0.993 3.007 8 H -0.275 1.275 9 H -0.261 1.261 10 H -0.274 1.274 11 C 0.459 3.541 12 O -0.638 6.638 13 C -0.141 4.141 14 H 0.125 0.875 15 C -0.163 4.163 16 H 0.099 0.901 17 C 0.077 3.923 18 N -0.659 5.659 19 C 0.076 3.924 20 C -0.170 4.170 21 H 0.097 0.903 22 H 0.043 0.957 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.276 0.724 26 H 0.102 0.898 27 H 0.089 0.911 28 H 0.347 0.653 29 H 0.098 0.902 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 -10.203 -3.770 11.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.174 5.174 3 C -0.478 4.478 4 H 0.086 0.914 5 C -0.204 4.204 6 N -0.533 5.533 7 Si 0.816 3.184 8 H -0.199 1.199 9 H -0.186 1.186 10 H -0.199 1.199 11 C 0.249 3.751 12 O -0.527 6.527 13 C -0.163 4.163 14 H 0.143 0.857 15 C -0.184 4.184 16 H 0.117 0.883 17 C -0.053 4.053 18 N -0.285 5.285 19 C -0.053 4.053 20 C -0.190 4.190 21 H 0.115 0.885 22 H 0.061 0.939 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.121 0.879 27 H 0.108 0.892 28 H 0.163 0.837 29 H 0.116 0.884 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.430 -10.344 -3.389 11.752 hybrid contribution 1.435 1.797 -0.186 2.307 sum -2.995 -8.547 -3.575 9.736 Atomic orbital electron populations 1.21413 0.79196 1.00771 1.00502 1.43783 1.06895 1.04468 1.62257 1.19660 1.00538 0.86202 1.41395 0.91351 1.26152 0.97011 1.03108 0.94091 1.70064 1.19576 1.30971 1.32655 0.84900 0.78337 0.76871 0.78336 1.19930 1.18595 1.19907 1.20155 0.87254 0.85563 0.82124 1.90448 1.16226 1.88039 1.58009 1.22146 1.01219 0.89201 1.03698 0.85690 1.24270 1.02322 1.00816 0.90990 0.88259 1.22643 0.95834 0.86069 1.00712 1.63556 1.36706 1.21601 1.06659 1.22607 0.97616 0.91181 0.93940 1.24194 0.98867 0.94058 1.01908 0.88487 0.93883 0.92245 0.91596 0.91465 0.87945 0.89240 0.83651 0.88364 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.66 8.17 127.77 1.04 6.70 16 2 N -0.46 -24.75 3.01 -658.90 -1.98 -26.74 16 3 C -0.35 -20.69 9.24 84.04 0.78 -19.91 16 4 H 0.07 4.33 7.45 -2.91 -0.02 4.31 16 5 C 0.00 -0.08 5.05 84.93 0.43 0.35 16 6 N -0.89 -48.25 10.83 21.66 0.23 -48.02 16 7 Si 0.99 43.11 29.57 68.60 2.03 45.14 16 8 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 9 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 C 0.46 23.93 7.41 87.66 0.65 24.57 16 12 O -0.64 -38.46 16.05 -3.08 -0.05 -38.51 16 13 C -0.14 -5.38 4.37 -11.54 -0.05 -5.43 16 14 H 0.13 4.34 7.34 -2.39 -0.02 4.32 16 15 C -0.16 -5.01 6.82 -9.90 -0.07 -5.08 16 16 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 17 C 0.08 1.69 7.27 86.45 0.63 2.32 16 18 N -0.66 -13.70 7.62 -500.87 -3.82 -17.52 16 19 C 0.08 1.79 7.27 86.45 0.63 2.42 16 20 C -0.17 -5.50 6.57 -9.90 -0.07 -5.57 16 21 H 0.10 3.62 7.80 -2.39 -0.02 3.61 16 22 H 0.04 2.00 7.83 -2.39 -0.02 1.98 16 23 H 0.06 2.85 6.80 -2.39 -0.02 2.83 16 24 H 0.07 2.45 6.89 -2.39 -0.02 2.43 16 25 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 26 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.35 6.11 8.92 -89.69 -0.80 5.31 16 29 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -69.43 252.62 0.73 -68.70 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.34 Total: 16.56 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 3.97 Total: 0.37 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -5.57 Total: -92.27 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -0.05 Total: -38.51 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -69.43 0.73 -68.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160583866.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.550 kcal (2) G-P(sol) polarization free energy of solvation -69.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds