Wall clock time and date at job start Sun Mar 29 2020 22:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47173 * 2 1 4 4 N 1.31795 * 119.04744 * 270.01787 * 3 2 1 5 5 C 1.32544 * 121.04126 * 179.97438 * 4 3 2 6 6 C 1.38367 * 119.16305 * 359.75132 * 5 4 3 7 7 F 1.35105 * 120.86088 * 180.25004 * 6 5 4 8 8 C 1.39874 * 118.27815 * 0.46921 * 6 5 4 9 9 N 1.38587 * 120.54865 * 179.79873 * 8 6 5 10 10 C 1.36915 * 119.99886 * 179.72057 * 9 8 6 11 11 H 1.08000 * 119.99404 * 359.72973 * 10 9 8 12 12 C 1.38834 * 120.00006 * 179.72917 * 10 9 8 13 13 N 1.31539 * 120.00283 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00078 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47474 * 89.99650 * 14 12 10 16 16 H 1.48498 * 109.47278 * 210.00085 * 14 12 10 17 17 H 1.48510 * 109.47116 * 329.99917 * 14 12 10 18 18 N 1.31725 * 119.04708 * 90.00102 * 3 2 1 19 19 H 1.09001 * 109.47136 * 60.00134 * 1 2 3 20 20 H 1.08997 * 109.47545 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47041 * 300.00087 * 1 2 3 22 22 H 1.08998 * 109.47041 * 239.99913 * 2 1 3 23 23 H 1.08999 * 109.47008 * 120.00400 * 2 1 3 24 24 H 1.08000 * 120.41398 * 179.97438 * 5 4 3 25 25 H 0.97005 * 120.00254 * 359.45703 * 9 8 6 26 26 H 0.97008 * 120.00488 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2453 2.0242 -1.1522 5 6 2.6864 3.2733 -1.1983 6 6 2.9199 3.9500 -0.0142 7 9 3.3648 5.2257 -0.0212 8 6 2.6879 3.2777 1.1902 9 7 2.9102 3.9092 2.4036 10 6 2.6739 3.2423 3.5758 11 1 2.3101 2.2257 3.5547 12 6 2.9020 3.8730 4.7914 13 7 3.3456 5.1111 4.8170 14 14 2.5803 2.9630 6.3907 15 1 3.8134 2.2505 6.8116 16 1 2.1864 3.9345 7.4425 17 1 1.4852 1.9803 6.1894 18 7 2.2455 2.0238 1.1516 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 2.8578 3.7579 -2.1481 25 1 3.2369 4.8224 2.4225 26 1 3.5046 5.5519 5.6664 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182716.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:13 Heat of formation + Delta-G solvation = -10.192978 kcal Electronic energy + Delta-G solvation = -13514.695123 eV Core-core repulsion = 10928.532365 eV Total energy + Delta-G solvation = -2586.162758 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.082 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.88462 -39.69637 -35.99268 -33.39636 -32.65525 -30.83773 -28.79753 -25.38391 -24.04354 -22.48009 -20.97702 -18.52544 -16.94877 -16.60331 -16.13811 -15.08766 -14.81266 -14.39372 -13.81883 -13.62277 -13.36383 -13.00937 -12.27037 -12.04880 -11.76213 -11.47797 -11.27742 -10.91595 -10.73777 -10.64681 -10.49935 -10.14670 -9.41242 -8.70636 -8.03762 -7.43217 -6.82294 -4.01543 1.89130 2.24229 3.07781 3.08547 3.13666 3.86734 4.47422 4.52070 4.89171 5.02267 5.09042 5.30964 5.62357 5.76097 5.84069 5.91536 6.19024 6.24898 6.51106 6.58157 6.64559 7.14764 7.25554 7.69716 8.04208 8.50027 8.95014 9.02690 9.48691 10.31879 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.029040 B = 0.010665 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.946406 B = 2624.889594 C = 3501.444784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.047 4.047 3 C 0.349 3.651 4 N -0.599 5.599 5 C 0.147 3.853 6 C -0.129 4.129 7 F -0.148 7.148 8 C 0.343 3.657 9 N -0.495 5.495 10 C -0.287 4.287 11 H 0.120 0.880 12 C 0.022 3.978 13 N -0.877 5.877 14 Si 0.943 3.057 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.264 1.264 18 N -0.563 5.563 19 H 0.055 0.945 20 H 0.057 0.943 21 H 0.057 0.943 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.152 0.848 25 H 0.412 0.588 26 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.333 -4.845 -4.589 7.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C 0.077 3.923 4 N -0.325 5.325 5 C -0.012 4.012 6 C -0.163 4.163 7 F -0.128 7.128 8 C 0.092 3.908 9 N -0.100 5.100 10 C -0.418 4.418 11 H 0.138 0.862 12 C -0.184 4.184 13 N -0.513 5.513 14 Si 0.769 3.231 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.188 1.188 18 N -0.292 5.292 19 H 0.074 0.926 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.099 0.901 23 H 0.100 0.900 24 H 0.169 0.831 25 H 0.250 0.750 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.563 -5.491 -4.081 7.305 hybrid contribution 0.525 1.427 0.829 1.732 sum -2.037 -4.064 -3.252 5.589 Atomic orbital electron populations 1.21642 0.94466 1.01372 1.02324 1.20148 0.96101 0.89372 1.02996 1.22532 0.90333 0.96017 0.83407 1.68101 1.24938 1.09930 1.29559 1.22478 0.92575 0.90462 0.95727 1.18491 1.19471 0.82749 0.95637 1.91351 1.88358 1.35824 1.97244 1.18280 0.97425 0.89795 0.85292 1.41007 1.52710 1.14356 1.01933 1.20130 1.40059 0.99911 0.81746 0.86218 1.25578 0.96225 0.95993 1.00584 1.69678 1.41337 1.11382 1.28871 0.85634 0.79294 0.78890 0.79315 1.19834 1.20483 1.18767 1.67718 1.23410 1.08456 1.29613 0.92624 0.92395 0.92362 0.90125 0.89995 0.83075 0.75040 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.89 37.16 0.37 -1.61 15 2 C -0.05 -0.75 6.37 -27.88 -0.18 -0.93 15 3 C 0.35 7.20 6.90 -157.25 -1.08 6.12 15 4 N -0.60 -12.22 10.33 -10.75 -0.11 -12.33 15 5 C 0.15 2.92 11.29 -17.20 -0.19 2.72 15 6 C -0.13 -2.88 7.40 -38.92 -0.29 -3.16 15 7 F -0.15 -3.22 16.77 2.25 0.04 -3.19 15 8 C 0.34 8.37 7.47 -154.61 -1.16 7.21 15 9 N -0.50 -12.69 5.41 -10.94 -0.06 -12.75 15 10 C -0.29 -7.48 9.72 -15.06 -0.15 -7.62 15 11 H 0.12 3.13 7.11 -52.49 -0.37 2.75 15 12 C 0.02 0.56 5.50 -17.46 -0.10 0.47 15 13 N -0.88 -22.86 13.05 55.49 0.72 -22.13 15 14 Si 0.94 19.48 29.55 -169.99 -5.02 14.45 15 15 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 16 H -0.28 -5.68 7.11 56.52 0.40 -5.28 15 17 H -0.26 -5.36 7.11 56.52 0.40 -4.95 15 18 N -0.56 -13.24 9.14 -9.89 -0.09 -13.33 15 19 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.08 1.15 8.14 -51.93 -0.42 0.72 15 23 H 0.08 1.27 8.14 -51.93 -0.42 0.84 15 24 H 0.15 2.45 8.06 -52.49 -0.42 2.03 15 25 H 0.41 10.65 7.46 -40.82 -0.30 10.34 15 26 H 0.28 6.84 8.31 -40.82 -0.34 6.50 15 LS Contribution 241.76 15.07 3.64 3.64 Total: -1.00 -27.57 241.76 -6.00 -33.57 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -2.35 Total: 8.86 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -2.77 Total: 3.20 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.46 Total: -60.54 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.04 Total: -3.19 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -27.57 -6.00 -33.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182716.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.376 kcal (2) G-P(sol) polarization free energy of solvation -27.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds