Wall clock time and date at job start Sun Mar 29 2020 22:03:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.50700 * 109.47173 * 2 1
4 4 N 1.31795 * 119.04744 * 270.01787 * 3 2 1
5 5 C 1.32544 * 121.04126 * 179.97438 * 4 3 2
6 6 C 1.38367 * 119.16305 * 359.75132 * 5 4 3
7 7 F 1.35105 * 120.86088 * 180.25004 * 6 5 4
8 8 C 1.39874 * 118.27815 * 0.46921 * 6 5 4
9 9 N 1.38587 * 120.54865 * 179.79873 * 8 6 5
10 10 C 1.36915 * 119.99886 * 179.72057 * 9 8 6
11 11 H 1.08000 * 119.99404 * 359.72973 * 10 9 8
12 12 C 1.38834 * 120.00006 * 179.72917 * 10 9 8
13 13 N 1.31539 * 120.00283 * 359.97438 * 12 10 9
14 14 Si 1.86800 * 120.00078 * 180.02562 * 12 10 9
15 15 H 1.48501 * 109.47474 * 89.99650 * 14 12 10
16 16 H 1.48498 * 109.47278 * 210.00085 * 14 12 10
17 17 H 1.48510 * 109.47116 * 329.99917 * 14 12 10
18 18 N 1.31725 * 119.04708 * 90.00102 * 3 2 1
19 19 H 1.09001 * 109.47136 * 60.00134 * 1 2 3
20 20 H 1.08997 * 109.47545 * 180.02562 * 1 2 3
21 21 H 1.08998 * 109.47041 * 300.00087 * 1 2 3
22 22 H 1.08998 * 109.47041 * 239.99913 * 2 1 3
23 23 H 1.08999 * 109.47008 * 120.00400 * 2 1 3
24 24 H 1.08000 * 120.41398 * 179.97438 * 5 4 3
25 25 H 0.97005 * 120.00254 * 359.45703 * 9 8 6
26 26 H 0.97008 * 120.00488 * 179.97438 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2453 2.0242 -1.1522
5 6 2.6864 3.2733 -1.1983
6 6 2.9199 3.9500 -0.0142
7 9 3.3648 5.2257 -0.0212
8 6 2.6879 3.2777 1.1902
9 7 2.9102 3.9092 2.4036
10 6 2.6739 3.2423 3.5758
11 1 2.3101 2.2257 3.5547
12 6 2.9020 3.8730 4.7914
13 7 3.3456 5.1111 4.8170
14 14 2.5803 2.9630 6.3907
15 1 3.8134 2.2505 6.8116
16 1 2.1864 3.9345 7.4425
17 1 1.4852 1.9803 6.1894
18 7 2.2455 2.0238 1.1516
19 1 -0.3633 0.5138 -0.8900
20 1 -0.3634 -1.0276 0.0005
21 1 -0.3633 0.5138 0.8900
22 1 1.8933 -0.5138 -0.8900
23 1 1.8933 -0.5139 0.8899
24 1 2.8578 3.7579 -2.1481
25 1 3.2369 4.8224 2.4225
26 1 3.5046 5.5519 5.6664
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001163182716.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:03:13
Heat of formation + Delta-G solvation = -26.719528 kcal
Electronic energy + Delta-G solvation = -13515.411768 eV
Core-core repulsion = 10928.532365 eV
Total energy + Delta-G solvation = -2586.879403 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 211.082 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-49.61981 -41.43784 -37.79898 -34.85753 -34.45357 -32.58175 -30.44573 -27.23470
-25.51163 -24.23012 -22.53753 -20.36527 -18.69007 -18.37394 -17.88108 -16.82948
-16.50460 -16.08335 -15.49836 -15.21831 -14.74991 -14.49281 -13.97231 -13.69224
-13.55015 -12.99233 -12.72676 -12.53666 -12.47007 -12.12020 -11.85820 -11.81530
-11.20742 -10.47797 -9.79903 -9.24722 -8.67311 -5.97341 0.18644 0.49037
1.39574 1.46705 1.54238 2.16547 2.71196 2.75639 3.19560 3.34954
3.37488 3.70234 4.15294 4.38100 4.50523 4.55225 4.69490 5.03533
5.08683 5.20845 5.27547 5.38659 5.47871 5.91992 6.25652 6.61925
7.07438 7.19489 7.68468 8.48664
Molecular weight = 211.08amu
Principal moments of inertia in cm(-1)
A = 0.029040 B = 0.010665 C = 0.007995
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 963.946406 B = 2624.889594 C = 3501.444784
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.047 4.047
3 C 0.342 3.658
4 N -0.590 5.590
5 C 0.163 3.837
6 C -0.150 4.150
7 F -0.148 7.148
8 C 0.337 3.663
9 N -0.519 5.519
10 C -0.314 4.314
11 H 0.111 0.889
12 C -0.019 4.019
13 N -0.914 5.914
14 Si 1.010 2.990
15 H -0.267 1.267
16 H -0.273 1.273
17 H -0.260 1.260
18 N -0.586 5.586
19 H 0.053 0.947
20 H 0.092 0.908
21 H 0.037 0.963
22 H 0.105 0.895
23 H 0.086 0.914
24 H 0.196 0.804
25 H 0.405 0.595
26 H 0.284 0.716
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.890 -6.363 -5.672 9.001
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.086 4.086
3 C 0.071 3.929
4 N -0.315 5.315
5 C 0.002 3.998
6 C -0.184 4.184
7 F -0.128 7.128
8 C 0.087 3.913
9 N -0.126 5.126
10 C -0.445 4.445
11 H 0.129 0.871
12 C -0.221 4.221
13 N -0.551 5.551
14 Si 0.831 3.169
15 H -0.193 1.193
16 H -0.198 1.198
17 H -0.183 1.183
18 N -0.315 5.315
19 H 0.072 0.928
20 H 0.111 0.889
21 H 0.057 0.943
22 H 0.123 0.877
23 H 0.105 0.895
24 H 0.212 0.788
25 H 0.241 0.759
26 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -3.133 -7.046 -5.202 9.301
hybrid contribution 0.673 1.817 0.863 2.121
sum -2.460 -5.229 -4.338 7.226
Atomic orbital electron populations
1.21607 0.92866 1.03391 1.01224 1.20377 0.97305 0.86547 1.04421
1.23527 0.88912 0.97708 0.82703 1.68278 1.23938 1.10002 1.29247
1.23173 0.90052 0.89978 0.96563 1.18706 1.20701 0.83165 0.95808
1.91348 1.88471 1.35721 1.97228 1.18789 0.96279 0.90420 0.85807
1.40994 1.55006 1.14277 1.02346 1.20199 1.41738 0.99917 0.82623
0.87078 1.26452 0.95679 0.96684 1.03311 1.69760 1.42960 1.12716
1.29666 0.84668 0.79231 0.77736 0.75237 1.19267 1.19828 1.18347
1.67816 1.24081 1.08390 1.31251 0.92767 0.88876 0.94349 0.87698
0.89540 0.78775 0.75856 0.90618
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.38 9.89 71.98 0.71 -2.67 15
2 C -0.05 -1.39 6.37 29.85 0.19 -1.20 15
3 C 0.34 13.48 6.90 138.77 0.96 14.44 15
4 N -0.59 -22.41 10.33 -187.93 -1.94 -24.35 15
5 C 0.16 6.05 11.29 84.62 0.96 7.00 15
6 C -0.15 -6.57 7.40 22.70 0.17 -6.40 15
7 F -0.15 -6.39 16.77 44.97 0.75 -5.64 15
8 C 0.34 16.57 7.47 133.20 1.00 17.57 15
9 N -0.52 -27.49 5.41 -188.51 -1.02 -28.51 15
10 C -0.31 -16.87 9.72 84.04 0.82 -16.05 15
11 H 0.11 5.98 7.11 -2.91 -0.02 5.96 15
12 C -0.02 -0.99 5.50 84.88 0.47 -0.52 15
13 N -0.91 -48.94 13.05 21.65 0.28 -48.66 15
14 Si 1.01 40.30 29.55 68.60 2.03 42.33 15
15 H -0.27 -10.35 7.11 99.48 0.71 -9.64 15
16 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15
17 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15
18 N -0.59 -27.38 9.14 -185.20 -1.69 -29.08 15
19 H 0.05 1.39 8.14 -2.39 -0.02 1.37 15
20 H 0.09 1.74 8.14 -2.39 -0.02 1.72 15
21 H 0.04 1.12 8.14 -2.39 -0.02 1.10 15
22 H 0.10 2.58 8.14 -2.39 -0.02 2.56 15
23 H 0.09 2.47 8.14 -2.39 -0.02 2.45 15
24 H 0.20 5.46 8.06 -2.91 -0.02 5.44 15
25 H 0.41 21.86 7.46 -92.70 -0.69 21.17 15
26 H 0.28 14.13 8.31 -92.70 -0.77 13.36 15
Total: -1.00 -59.58 241.76 4.19 -55.40
By element:
Atomic # 1 Polarization: 25.83 SS G_CDS: 0.52 Total: 26.34 kcal
Atomic # 6 Polarization: 6.90 SS G_CDS: 5.26 Total: 12.16 kcal
Atomic # 7 Polarization: -126.22 SS G_CDS: -4.37 Total: -130.59 kcal
Atomic # 9 Polarization: -6.39 SS G_CDS: 0.75 Total: -5.64 kcal
Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal
Total: -59.58 4.19 -55.40 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001163182716.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.676 kcal
(2) G-P(sol) polarization free energy of solvation -59.582 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.907 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.395 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.720 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds