Wall clock time and date at job start Sun Mar 29 2020 21:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38333 * 119.94909 * 2 1 4 4 C 1.38429 * 120.16629 * 180.02562 * 3 2 1 5 5 Cl 1.73606 * 119.96867 * 180.02562 * 4 3 2 6 6 C 1.38191 * 120.06368 * 359.97438 * 4 3 2 7 7 C 1.39038 * 119.89409 * 0.02635 * 6 4 3 8 8 N 1.39299 * 120.07880 * 180.02562 * 7 6 4 9 9 C 1.36855 * 120.00161 * 359.97438 * 8 7 6 10 10 H 1.08002 * 119.99691 * 0.02562 * 9 8 7 11 11 C 1.38789 * 119.99739 * 180.02562 * 9 8 7 12 12 N 1.31594 * 120.00524 * 0.02562 * 11 9 8 13 13 Si 1.86809 * 119.99534 * 179.72577 * 11 9 8 14 14 H 1.48501 * 109.46667 * 180.27670 * 13 11 9 15 15 H 1.48500 * 109.47133 * 300.27477 * 13 11 9 16 16 H 1.48493 * 109.47037 * 60.27530 * 13 11 9 17 17 C 1.38037 * 119.94821 * 180.27929 * 2 1 3 18 18 H 1.08998 * 109.47280 * 89.99749 * 1 2 3 19 19 H 1.09002 * 109.47238 * 209.99807 * 1 2 3 20 20 H 1.08997 * 109.46857 * 330.00053 * 1 2 3 21 21 H 1.08002 * 119.91735 * 0.02562 * 3 2 1 22 22 H 1.07991 * 120.05029 * 180.02562 * 6 4 3 23 23 H 0.97001 * 120.00135 * 180.02562 * 8 7 6 24 24 H 0.97005 * 119.99699 * 359.71961 * 12 11 9 25 25 H 1.08002 * 120.03426 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1986 0.0000 4 6 3.5819 1.2039 -0.0005 5 17 4.4434 2.7111 0.0001 6 6 4.2787 0.0105 -0.0005 7 6 3.5872 -1.1957 -0.0006 8 7 4.2857 -2.4009 0.0000 9 6 5.6542 -2.3987 0.0000 10 1 6.1926 -1.4624 0.0000 11 6 6.3501 -3.5995 0.0000 12 7 5.6941 -4.7402 -0.0005 13 14 8.2182 -3.5963 -0.0077 14 1 8.7154 -4.9956 -0.0132 15 1 8.7070 -2.8926 -1.2206 16 1 8.7170 -2.8984 1.2044 17 6 2.1961 -1.1960 -0.0058 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 1.6554 2.1327 0.0004 22 1 5.3586 0.0148 -0.0005 23 1 3.8021 -3.2418 -0.0004 24 1 4.7240 -4.7418 0.0032 25 1 1.6558 -2.1312 -0.0108 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187110.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:11 Heat of formation + Delta-G solvation = -9.319478 kcal Electronic energy + Delta-G solvation = -11340.263528 eV Core-core repulsion = 9150.182271 eV Total energy + Delta-G solvation = -2190.081256 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.046 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.38196 -37.70479 -37.03808 -34.03821 -32.67496 -29.93403 -27.74401 -26.27498 -23.22977 -22.10140 -19.64465 -18.43686 -17.33816 -16.39877 -15.80097 -15.39040 -15.21388 -14.89987 -14.18250 -13.74949 -13.32292 -13.19666 -13.04504 -12.55819 -12.47798 -12.15436 -11.95248 -11.85025 -11.50181 -11.48447 -10.54132 -9.45317 -8.93723 -8.69906 -5.86673 0.46866 0.73833 1.25987 1.53147 1.63009 1.78892 2.42077 2.78627 3.17698 3.23381 4.01571 4.35354 4.44026 4.55526 4.68153 4.91270 4.93525 5.00250 5.26153 5.36376 5.53492 5.57053 5.79401 6.01253 6.10284 6.55518 7.34434 7.37949 8.52173 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.032019 B = 0.009371 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.272605 B = 2987.366962 C = 3846.492464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.018 4.018 3 C -0.224 4.224 4 C 0.028 3.972 5 Cl -0.082 7.082 6 C -0.240 4.240 7 C 0.206 3.794 8 N -0.597 5.597 9 C -0.396 4.396 10 H 0.094 0.906 11 C -0.056 4.056 12 N -0.926 5.926 13 Si 1.132 2.868 14 H -0.281 1.281 15 H -0.268 1.268 16 H -0.268 1.268 17 C -0.243 4.243 18 H 0.082 0.918 19 H 0.071 0.929 20 H 0.083 0.917 21 H 0.140 0.860 22 H 0.109 0.891 23 H 0.382 0.618 24 H 0.255 0.745 25 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.161 9.480 -0.030 11.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.019 4.019 3 C -0.246 4.246 4 C 0.000 4.000 5 Cl -0.053 7.053 6 C -0.266 4.266 7 C 0.089 3.911 8 N -0.205 5.205 9 C -0.525 4.525 10 H 0.112 0.888 11 C -0.253 4.253 12 N -0.564 5.564 13 Si 0.952 3.048 14 H -0.206 1.206 15 H -0.193 1.193 16 H -0.193 1.193 17 C -0.267 4.267 18 H 0.101 0.899 19 H 0.090 0.910 20 H 0.102 0.898 21 H 0.158 0.842 22 H 0.127 0.873 23 H 0.216 0.784 24 H 0.066 0.934 25 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.459 8.512 -0.036 9.610 hybrid contribution -1.287 0.454 0.002 1.365 sum -5.746 8.967 -0.034 10.650 Atomic orbital electron populations 1.20806 0.88372 1.03685 1.03301 1.19751 0.97209 0.90958 0.94004 1.20559 0.90867 0.98777 1.14390 1.20620 0.92629 0.85306 1.01408 1.98301 1.77848 1.32165 1.96961 1.20286 0.99346 0.90325 1.16609 1.17968 0.91671 0.86171 0.95294 1.40927 1.05697 1.04116 1.69747 1.20744 0.82525 0.97244 1.51996 0.88812 1.27842 1.12071 0.90199 0.95142 1.71030 1.09077 1.27493 1.48779 0.82641 0.67410 0.76584 0.78190 1.20578 1.19341 1.19320 1.20501 0.91054 0.98956 1.16218 0.89900 0.90957 0.89840 0.84175 0.87268 0.78404 0.93402 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 10.01 71.24 0.71 -1.65 15 2 C -0.02 -0.58 5.88 -19.89 -0.12 -0.70 15 3 C -0.22 -7.43 9.48 22.34 0.21 -7.22 15 4 C 0.03 1.05 6.32 22.30 0.14 1.19 15 5 Cl -0.08 -2.66 28.95 -2.72 -0.08 -2.74 15 6 C -0.24 -10.64 9.09 22.45 0.20 -10.44 15 7 C 0.21 9.39 6.62 38.36 0.25 9.64 15 8 N -0.60 -30.19 5.43 -184.30 -1.00 -31.19 15 9 C -0.40 -21.29 9.56 84.04 0.80 -20.48 15 10 H 0.09 4.97 5.68 -2.91 -0.02 4.95 15 11 C -0.06 -2.97 5.50 84.86 0.47 -2.50 15 12 N -0.93 -52.65 13.70 21.65 0.30 -52.36 15 13 Si 1.13 47.06 29.92 68.60 2.05 49.11 15 14 H -0.28 -11.72 7.11 99.48 0.71 -11.02 15 15 H -0.27 -10.41 7.11 99.48 0.71 -9.70 15 16 H -0.27 -10.39 7.11 99.48 0.71 -9.69 15 17 C -0.24 -9.35 9.55 22.43 0.21 -9.14 15 18 H 0.08 1.64 8.14 -2.39 -0.02 1.62 15 19 H 0.07 1.51 8.09 -2.39 -0.02 1.49 15 20 H 0.08 1.55 8.08 -2.39 -0.02 1.53 15 21 H 0.14 3.85 8.06 -2.91 -0.02 3.83 15 22 H 0.11 5.11 5.96 -2.92 -0.02 5.10 15 23 H 0.38 19.01 6.73 -92.71 -0.62 18.38 15 24 H 0.26 14.34 6.77 -92.70 -0.63 13.71 15 25 H 0.12 4.24 8.06 -2.91 -0.02 4.21 15 Total: -1.00 -58.94 236.88 4.89 -54.05 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.73 Total: 24.41 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 2.89 Total: -41.29 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -0.70 Total: -83.55 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.05 Total: 49.11 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -0.08 Total: -2.74 kcal Total: -58.94 4.89 -54.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187110.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.734 kcal (2) G-P(sol) polarization free energy of solvation -58.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds